rschulz's microarray [55 articles] Export

Recent papers added to rschulz's library classified by the tag microarray. You can also see everyone's microarray.

	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [My Copy] Nature Protocols, Vol. 4, No. 1. (18 December 2008), pp. 44-57. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to web-tool microarray david bioinformatics analysis-tool by rschulz on 2009-10-09 13:57:10 as along with 16 people and 2 groups darian jperkins tonamswish operon VGreiff jfr Stew bertelsen Sonix dswan guhjy wimufi brianb idonaldson mrochman daforerog Bioinformatics - CRUK Bioinformatics
	Submicroscopic genomic alterations in Silver-Russell syndrome and Silver-Russell-like patients. [My Copy] Journal of medical genetics (14 September 2009) by Sara Bruce, Katariina Hannula-Jouppi, Mari Puoskari, et al.Ingegerd Fransson, Kalle Oj O. Simola, Marita Lipsanen-Nyman, Juha Kere posted to srs microarray human epigenetics disease cgh affymetrix by rschulz on 2009-09-16 12:44:58 as along with 1 person Terkko
	Bioinformatics applications for pathway analysis of microarray data [My Copy] Current Opinion in Biotechnology, Vol. 19, No. 1. (18 February 2008), pp. 50-54. by T. Werner posted to review pathway ontology microarray analysis-tool by rschulz on 2009-08-19 12:08:46 as along with 4 people saman_vp guhjy jfr AlexanderPico
	A gene expression map for Caenorhabditis elegans. [My Copy] Science (New York, N.Y.), Vol. 293, No. 5537. (14 September 2001), pp. 2087-2092. by S. K. Kim, J. Lund, M. Kiraly, et al.K. Duke, M. Jiang, J. M. Stuart, A. Eizinger, B. N. Wylie, G. S. Davidson posted to som microarray gene-expression celegans by rschulz on 2009-08-12 14:05:29 as along with 3 people and 1 group thegoose2 tharris balajis C. elegans / WormBase
	R/BHC: fast Bayesian hierarchical clustering for microarray data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (6 August 2009), 242. by Richard Savage, Katherine Heller, Yang Xu, et al.Zoubin Ghahramani, William Truman, Murray Grant, Katherine Denby, David Wild posted to analysis-tool bayes clustering microarray r_bhc by rschulz on 2009-08-10 10:38:39 as along with 10 people and 1 group ptrobajo meanerelk nuin rdiaz guhjy lwaldron phoenixzxl barriot RamuAnandakrishnan erexhepa Bioinformatics
	Global analysis of DNA methylation and transcription of human repetitive sequences. [My Copy] Epigenetics : official journal of the DNA Methylation Society, Vol. 4, No. 5. (17 July 2009), pp. 339-350. by Béatrice Horard, Angéline Eymery, Geneviève Fourel, et al.Nikita Vassetzky, Jacques Puechberty, Gérard Roizes, Kevin Lebrigand, Pascal Barbry, Aurélie Laugraud, Christian Gautier, Elsa Ben B. Simon, Frédéric Devaux, Frédérique Magdinier, Claire Vourc'h, Eric Gilson posted to dna-methylation epigenetics human medip microarray repeat retrotransposon transcription transposon by rschulz on 2009-07-29 09:03:48 as along with 2 people inesdesantiago guhjy
	Normalization of cDNA microarray data. [My Copy] Methods (San Diego, Calif.), Vol. 31, No. 4. (December 2003), pp. 265-273. by G. K. Smyth, T. Speed posted to loess microarray normalization by rschulz on 2009-07-27 16:07:06 as along with 1 person guhjy
	Construction and use of gene expression covariation matrix [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 214. by Jerome Hennetin, Petri Pehkonen, Michel Bellis posted to affymetrix bioinformatics coexpression covariation microarray single-channel by rschulz on 2009-07-15 14:17:44 as along with 2 people dipenps jmeppley
	WebArrayDB: cross-platform microarray data analysis and public data repository [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2425-2429. by Xiao-Qin Xia, Michael McClelland, Steffen Porwollik, Wenzhi Song, Xianling Cong, Yipeng Wang posted to analysis-tool microarray webarraydb by rschulz on 2009-07-15 09:58:40 as along with 8 people ptrobajo lwaldron daforerog dswan natstreet guhjy brianb neils
	Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions. [My Copy] Genome research, Vol. 19, No. 8. (19 August 2009), pp. 1374-1383. by Scott V. Dindot, Richard Person, Mark Strivens, Rejinaldo Garcia, Arthur L. Beaudet posted to cgi chip-chip cpg epigenetics h3k4me3 h3k9me3 imprinting microarray tiling-array by rschulz on 2009-07-15 09:33:18 as along with 3 people inesdesantiago clearbluespring taylor73
	Gene expression profiling of alpha-radiation-induced rat osteosarcomas: Identification of dysregulated genes involved in radiation-induced tumorigenesis of bone. [My Copy] International journal of cancer. Journal international du cancer (23 February 2009) by Kazuhiro Daino, Nicolas Ugolin, Sandrine Altmeyer-Morel, Marie-Noëlle N. Guilly, Sylvie Chevillard posted to blcap cancer human microarray osteosarcoma qpcr by rschulz on 2009-05-18 11:27:58 as
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to bioconductor gene-expression limma microarray treat by rschulz on 2009-04-27 16:15:35 as along with 12 people and 1 group shikin jfr VGreiff lwaldron kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. [My Copy] Development (Cambridge, England) (9 July 2008) by Le-Ben B. Wan, Hua Pan, Sridhar Hannenhalli, et al.Yong Cheng, Jun Ma, Andrew Fedoriw, Victor Lobanenkov, Keith E E. Latham, Richard M M. Schultz, Marisa S S. Bartolomei posted to ctcf expression gene-expression microarray oocyte by rschulz on 2009-04-27 08:36:44 as along with 2 people aprickett sebastien_vigneau
	Normalization and experimental design for ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (25 June 2007), 219. by Shouyong Peng, Artyom A. Alekseyenko, Erica Larschan, Mitzi I. Kuroda, Peter J. Park posted to chip-chip ma-plot microarray normalization rotation by rschulz on 2009-04-16 10:45:41 as along with 7 people and 2 groups siebert guhjy kengg Stew yevishere caseybrown baldigroup EisenLab Plantandetc
	Model selection and efficiency testing for normalization of cDNA microarray data [My Copy] Genome Biology, Vol. 5, No. 8. (2004), R60. by Matthias Futschik, Toni Crompton posted to bioconductor cdna microarray normalization olin by rschulz on 2009-03-27 14:15:11 as along with 2 people Sally_Student marboe
	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server. [My Copy] Bioinformatics (Oxford, England) (23 March 2009) by Paul Geeleher, Dermot Morris, John P P. Hinde, Aaron Golden posted to analysis-tool bioconductorbuntu bioinformatics microarray by rschulz on 2009-03-25 13:17:56 as along with 3 people druvus nuin sjcockell
	A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis [My Copy] Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785. by Thomas A. Down, Vardhman K. Rakyan, Daniel J. Turner, et al.Paul Flicek, Heng Li, Eugene Kulesha, Stefan Graf, Nathan Johnson, Javier Herrero, Eleni M. Tomazou, Natalie P. Thorne, Liselotte Backdahl, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Richard Durbin, Simon Tavare, Stephan Beck posted to batman dna-methylation medip medip-chip medip-seq microarray by rschulz on 2009-03-03 15:40:07 as along with 9 people and 1 group fabrices druvus timhubbard mmartin sebastien_vigneau bpcusack slevy03 oelemento guhjy KCL & UCL Bioinformatics
	Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus. [My Copy] American journal of medical genetics. Part A, Vol. 146A, No. 24. (15 December 2008), pp. 3227-3229. by J. I. Martin-Subero, M. Bibikova, D. Mackay, et al.E. Wickham-Garcia, N. Sellami, J. Richter, R. Santer, A. Caliebe, J. B. Fan, I. K. Temple, R. Siebert posted to diabetes dna-methylation epigenetics human imprinting microarray tndm by rschulz on 2009-01-29 08:28:16 as
	Power enhancement via multivariate outlier testing with gene expression arrays. [My Copy] Bioinformatics (Oxford, England) (16 November 2008) by Adam Asare, Zhong Gao, Vincent J J. Carey, Richard Wang, Vicki Seyfert-Margolis posted to analysis-tool bioconductor bioinformatics microarray quality-control by rschulz on 2009-01-12 10:50:57 as along with 3 people jfr lptolik guhjy
	arrayQualityMetrics--a bioconductor package for quality assessment of microarray data [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 415-416. by Audrey Kauffmann, Robert Gentleman, Wolfgang Huber posted to analysis-tool arrayqualitymetrics bioconductor bioinformatics microarray quality-control by rschulz on 2009-01-12 10:11:46 as along with 16 people and 1 group jperkins VGreiff Zephyrus daforerog shikin lwaldron jfr ptrobajo rdiaz siebert bertelsen pkonings dswan renatomilani nuin guhjy Bioinformatics
	Linear RNA amplification for the production of microarray hybridization probes. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 420 (2008), pp. 303-317. by A. Klebes, T. B. Kornberg posted to blood gene-expression microarray platelet rna-amplification by rschulz on 2008-12-09 15:52:30 as along with 1 person behindtherabbit
	RNA stabilization of peripheral blood and profiling by bead chip analysis. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 496 (2009), pp. 175-210. by S. Debey-Pascher, D. Eggle, J. L. Schultze posted to blood gene-expression illumina microarray paxgene rna-stabilization by rschulz on 2008-12-09 15:42:53 as
	Profiling gene transcription in the developing embryo: microarray analysis on gene chips. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 461 (2008), pp. 631-655. by D. Chambers, A. Lumsden posted to gene-expression microarray rna-amplification by rschulz on 2008-12-09 14:04:58 as
	Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. [My Copy] Nat Biotechnol, Vol. 20, No. 9. (September 2002), pp. 940-943. by N. N. Iscove, M. Barbara, M. Gu, M. Gibson, C. Modi, N. Winegarden posted to gene-expression microarray rna-amplification by rschulz on 2008-12-09 14:03:15 as along with 2 people miguel eskay
	Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling. [My Copy] Nucleic acids research, Vol. 34, No. 3. (2006), pp. 996-1014. by V. Nygaard, E. Hovig posted to gene-expression microarray rna-amplification by rschulz on 2008-12-09 13:59:49 as
	Transcriptional profiling of small samples in the central nervous system. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 439 (2008), pp. 147-158. by S. D. Ginsberg posted to gene-expression microarray rna-amplification by rschulz on 2008-12-09 13:57:41 as
	A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Marta Blangiardo, Sylvia Richardson posted to affymetrix bayes calibration combination microarray panel-of-experts by rschulz on 2008-12-03 09:49:16 as along with 2 people guhjy barriot
	CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by Johannes Rainer, Fatima Sanchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski posted to affymetrix bioconductor microarray r web-tool by rschulz on 2008-11-29 14:20:16 as along with 5 people shikin daforerog guhjy jfr rdiaz
	ExonMiner: Web Service for Analysis of GeneChip Exon Array Data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano posted to affymetrix exon-microarray exonminer microarray splicing web web-tool by rschulz on 2008-11-27 11:05:57 as
	Determining gene expression on a single pair of microarrays [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Robert Reid, Anthony Fodor posted to comparison cyber-t microarray no-replicate pinc by rschulz on 2008-11-24 11:46:29 as along with 6 people jfr dswan guhjy lptolik barriot nuin
	Decoding randomly ordered DNA arrays. [My Copy] Genome research, Vol. 14, No. 5. (May 2004), pp. 870-877. by Kevin L. Gunderson, Semyon Kruglyak, Michael S. Graige, et al.Francisco Garcia, Bahram G. Kermani, Chanfeng Zhao, Diping Che, Todd Dickinson, Eliza Wickham, Jim Bierle, Dennis Doucet, Monika Milewski, Robert Yang, Chris Siegmund, Juergen Haas, Lixin Zhou, Arnold Oliphant, Jian-Bing B. Fan, Steven Barnard, Mark S. Chee posted to decoding dna-computing illumina microarray random by rschulz on 2008-11-21 11:32:28 as along with 5 people and 2 groups dswan daforerog ptrobajo xwbcn jeremymiller Bioinformatics GeschwindLab
	Cross-Hybridization Modeling on Affymetrix Exon Arrays. [My Copy] Bioinformatics (Oxford, England) (4 November 2008) by Karen Kapur, Hui Jiang, Yi Xing, Wing Hung H. Wong posted to cross-hybridisation exon-microarray genebase human microarray mouse by rschulz on 2008-11-21 10:59:36 as along with 3 people jfr dswan GeeSharpMinor
	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. [My Copy] Nucleic acids research (10 November 2008) by Helen Parkinson, Misha Kapushesky, Nikolay Kolesnikov, et al.Gabriella Rustici, Mohammad Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F F. Rayner, Faisal Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Zheng Z. Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna Guha G. Neogi, Philippe Rocca-Serra, Susanna-Assunta A. Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma posted to arrayexpress database ebi microarray by rschulz on 2008-11-21 10:38:44 as along with 1 person guhjy
	Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines [My Copy] Nat Genet, Vol. 40, No. 12. (2 December 2008), pp. 1416-1425. by John C. Castle, Chaolin Zhang, Jyoti K. Shah, et al.Amit V. Kulkarni, Auinash Kalsotra, Thomas A. Cooper, Jason M. Johnson posted to alt-polya microarray motif polyadenylation rna splicing by rschulz on 2008-11-10 09:46:46 as along with 8 people ericrpaquet fenghezi tanglingfung xingxu asg pengchy djkt dchughes
	Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis [My Copy] Bioinformatics Research and Applications (2008), pp. 481-491. by Juntao Li, Jianhua Liu, R. Karuturi posted to batch-effect microarray normalization by rschulz on 2008-11-05 15:12:25 as
	Adjusting batch effects in microarray expression data using empirical Bayes methods. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 1. (21 January 2007), pp. 118-127. by W. Evan Johnson, Cheng Li, Ariel Rabinovic posted to batch-effect microarray normalization by rschulz on 2008-11-05 12:45:01 as along with 3 people ptrobajo guhjy jfr
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. [My Copy] Nucleic acids research, Vol. 36, No. 21. (1 December 2008), e141. by Peter A. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan J. van Ommen, Johan T. den Dunnen posted to affymetrix benchmark deep-seq illumina microarray rna rna-seq solexa by rschulz on 2008-10-20 08:17:34 as along with 25 people manduca hzoltan GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed poschm stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus pengchy
	Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays. [My Copy] PLoS Genet, Vol. 4, No. 3. (March 2008) by X. Zhang, S. Shiu, A. Cal, J. O. Borevitz posted to arabidopsis dna-methylation epigenetics microarray plant snp whole-genome by rschulz on 2008-03-31 09:34:11 as along with 1 person talponer
	SNP-specific array-based allele-specific expression analysis. [My Copy] Genome research, Vol. 18, No. 5. (27 May 2008), pp. 771-779. by H. T. Bjornsson, T. J. Albert, C. M. Ladd-Acosta, et al.R. D. Green, M. A. Rongione, C. M. Middle, R. A. Irizarry, K. W. Broman, A. P. Feinberg posted to epigenetics expression imprinting microarray snp by rschulz on 2008-03-31 09:12:08 as along with 5 people and 1 group vplagnol gruberjd xwbcn guhjy dpollard RockmanLab
	RNA expression microarray analysis in mouse prospermatogonia: identification of candidate epigenetic modifiers. [My Copy] Developmental dynamics : an official publication of the American Association of Anatomists, Vol. 237, No. 4. (10 April 2008), pp. 1082-1089. by Christophe Lefèvre, Jeffrey R. Mann posted to epigenetics expression germline microarray mouse sperm by rschulz on 2008-03-12 16:37:45 as along with 1 person altotor
	Imprinted genes: identification by chromosome rearrangements and post-genomic strategies. [My Copy] Trends Genet, Vol. 18, No. 7. (July 2002), pp. 359-366. by R. J. Oakey, C. V. Beechey posted to chromosome epigenetics expression gene imprinting microarray review upd by rschulz on 2008-01-09 17:30:47 as
	Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling. [My Copy] Genome Res, Vol. 13, No. 6B. (June 2003), pp. 1402-1409. by I. Nikaido, C. Saito, Y. Mizuno, et al.M. Meguro, H. Bono, M. Kadomura, T. Kono, G. A. Morris, P. A. Lyons, M. Oshimura, Y. Hayashizaki, Y. Okazaki, , posted to androgenote epigenetics expression gene imprinting microarray parthenogenote riken by rschulz on 2008-01-09 17:22:28 as
	Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm. [My Copy] Plant Physiol, Vol. 145, No. 2. (October 2007), pp. 411-425. by R. M. Stupar, P. J. Hermanson, N. M. Springer posted to endosperm epigenetics hybrid imprinting interploidy maize microarray by rschulz on 2008-01-07 09:10:16 as along with 2 people echinotrix dandaman
	The PcG gene Sfmbt2 is paternally expressed in extraembryonic tissues. [My Copy] Gene Expr Patterns, Vol. 8, No. 2. (January 2008), pp. 107-116. by A. Kuzmin, Z. Han, M. C. Golding, M. R. Mann, K. E. Latham, S. Varmuza posted to androgenote blastocyst epigenetics expression gene imprinting microarray parthenogenote sfmbt2 uniparental by rschulz on 2008-01-03 09:00:32 as
	Microarray expression profiling of tissues from mice with uniparental duplications of chromosomes 7 and 11 to identify imprinted genes. [My Copy] Mamm Genome, Vol. 12, No. 10. (October 2001), pp. 758-764. by J. D. Choi, L. A. Underkoffler, J. N. Collins, et al.S. M. Marchegiani, N. A. Terry, C. V. Beechey, R. J. Oakey posted to duplication epigenetics expression gene imprinting microarray t65h uniparental upd by rschulz on 2007-12-17 13:59:05 as
	Postmeiotic sex chromatin in the male germline of mice. [My Copy] Curr Biol, Vol. 16, No. 7. (4 April 2006), pp. 660-667. by S. H. Namekawa, P. J. Park, L. F. Zhang, et al.J. E. Shima, J. R. McCarrey, M. D. Griswold, J. T. Lee posted to affymetrix cell epigenetics expression gene germ germline male microarray sperm transcription x-inactivation by rschulz on 2007-12-12 13:34:44 as along with 1 person altotor
	Evaluation in mammalian oocytes of gene transcripts linked to epigenetic reprogramming. [My Copy] Reproduction, Vol. 134, No. 4. (October 2007), pp. 549-558. by R. S. Oliveri, M. Kalisz, C. K. Schjerling, C. Y. Andersen, R. Borup, A. G. Byskov posted to affymetrix development epigenetics expression gene microarray oocyte oogenesis transcription by rschulz on 2007-12-12 13:21:31 as
	Transcript profiling during mouse oocyte development and the effect of gonadotropin priming and development in vitro. [My Copy] Dev Biol, Vol. 286, No. 2. (15 October 2005), pp. 493-506. by H. Pan, M. J. O'brien, K. Wigglesworth, J. J. Eppig, R. M. Schultz posted to affymetrix development expression gene microarray oocyte oogenesis transcription by rschulz on 2007-12-12 13:13:51 as
	Stochastic models inspired by hybridization theory for short oligonucleotide arrays. [My Copy] J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 882-893. by Z. Wu, R. A. Irizarry posted to affymetrix algorithm expression gcrma gene microarray summary by rschulz on 2007-12-12 10:33:03 as along with 2 people miguel nicholso
	Summaries of Affymetrix GeneChip probe level data [My Copy] Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted to affymetrix algorithm expression gene microarray probe rma summary by rschulz on 2007-12-12 10:28:54 as along with 17 people jperkins daforerog lwaldron shikin dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak bertelsen srp33

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epigenetics	197
imprinting	134
dna-methylation	89
human	72
review	65
microarray	55
mouse	49
transcription	47
som	41
cancer	37
expression	36
methylation	36
dna	32
blcap	31
brain	31
nnat	29
evolution	28
analysis-tool	27
bioinformatics	27
gene	27
cpg	26
gene-expression	23
gpu	21
deep-seq	20
polyadenylation	19
ctcf	18
dnmt3l	18
rna	18
oocyte	17
chip-seq	16
retrotransposon	16
cgi	15
bc10	14
histone	14
neuronatin	14
retrotransposition	14
development	13
germline	13
periodicity	13
affymetrix	12
ann	12
repeat	12
alternative	11
dnmt1	11
next-gen-seq	11
promoter	11
rna-seq	11
sequence	11
solexa	11
chrx	10
dnmt3a	10
embryo	10
plant	10
sperm	10
cell	9
dinucleotide	9
xci	9
arabidopsis	8
bioconductor	8
genome-wide	8
network	8
nucleosome	8
protein	8
rna-repair	8
sequence-alignment	8
snp	8
splicing	8
stemcell	8
transposon	8
antisense	7
dmr	7
grb10	7
interference	7
intron	7
male	7
sequencing	7
x-inactivation	7
bladder	6
chromosome	6
commd1	6
database	6
genetics	6
germ	6
mechanism	6
medip	6
normalization	6
placenta	6
prediction	6
retrogene	6
self-organizing-map	6
silencing	6
bayes	5
chip-chip	5
cortex	5
cuda	5
function	5
germcell	5
learning	5
line	5
multiple-alignment	5
nimblegen	5
rna-amplification	5
tandem	5
termination	5
algorithm	4
alignment	4
alt-polya	4
bisulfite	4
chr15	4
cohesin	4
comparative	4
computational	4
cpg-periodicity	4
disease	4
dnmt3	4
dnmt3b	4
feature	4
gnas	4
h19	4
histone-code	4
iap	4
illumina	4
immunology	4
metabolism	4
neural	4
oocyte-derivation	4
pcr	4
polymerase	4
sirna	4
snrpn	4
stats-model	4
summary	4
upd	4
web-tool	4
xist	4
yeast	4
air	3
alkb	3
alu	3
androgenote	3
artificial	3
benchmark	3
binding	3
biochemistry	3
blastocyst	3
blood	3
bone	3
cervix	3
chr12	3
chry	3
cognition	3
comment	3
computational-model	3
copper	3
deletion	3
dlk1	3
drosophila	3
endosperm	3
es	3
eukaryote	3
g9a	3
genome	3
genomics	3
google	3
hybrid	3
hybridization	3
java	3
leukemia	3
machine-learning	3
maize	3
mammal	3
maternal	3
mathematics	3
medip-chip	3
metabolomics	3
method	3
methyltransferase	3
motif	3
ncrna	3
nesp	3
neural-network	3
nvidia	3
osteosarcoma	3
parthenogenote	3
paternal	3
pcdh11xy	3
pharmacology	3
primer	3
probe	3
proteomics	3
qpcr	3
r	3
rna-editing	3
rnai	3
sex	3
sine	3
stalling	3
statistics	3
technology	3
tissue	3
tissue-specific	3
tool	3
ucsc-browser	3
web	3
whole-genome	3
zfp	3
adenoma	2
ageing	2
agent	2
allele-specific	2
ambiore	2
ancestry	2
argonaute	2
atlas	2
background	2
bacteria	2
batch-effect	2
binding-site	2
browser	2
celegans	2
cellular	2
chimp	2
chr20	2
cnn	2
cnv	2
cycling	2
ddc	2
design	2
diabetes	2
dicer	2
dna-nuclease	2
dog	2
duplication	2
dynamic-programming	2
education	2
eed	2
elongation	2
ensembl	2
environment	2
exon-microarray	2
fgf4	2
galaxy	2
gdmr	2
geography	2
google-scholar	2
h3k4me3	2
hebb	2
hela	2
hmc	2
hydroxymethylcytosine	2
igf2	2
immunity	2
imprint-establishment	2
inheritance	2
inpp5f_v2	2
kdm1b	2
kernel	2
kidney	2
l1	2
leg-length	2
liver	2
ltr	2
lung	2
maq	2
mcts2	2
measurement	2
medip-seq	2
model	2
muscle	2
mutation	2
nanopore	2
neuron	2
nibp	2
nuclear-transfer	2
oct4	2
ontology	2
oogenesis	2
parallel-computation	2
pathogen	2
pathway	2
pecan	2
peg3	2
phylogeny	2
pituitary	2
pollution	2
quality-control	2
rat	2
reprogramming	2
rotation	2
rtl1	2
sanger	2
self-organization	2
simulation	2
speech	2
structure	2
svm	2
t1d	2
time-series	2
translocation	2
transposition	2
trans-splicing	2
trd	2
u2af1-rs1	2
ucsc	2
uniparental	2
walking	2
world	2
zebrafish	2
28way	1
454	1
5-aza	1
5mec	1
ability	1
abi-solid	1
accessory-sex-gland	1
actb	1
activation	1
adenosine	1
adrenal	1
afm	1
ago	1
ago1	1
alt-splicing	1
amazon	1
amplification	1
analytical	1
anatomy	1
ancestor	1
annotation	1
antibody	1
antidepressant	1
apoptosis	1
aprt	1
archaea	1
aromatics	1
arrayexpress	1
arrayqualitymetrics	1
arsenic	1
art	1
assembly	1
assisted	1
associative	1
ati	1
atomic	1
atp10a	1
attachment	1
audio	1
aunp	1
autism	1
autocorrelation	1
autosome	1
azadc	1
babelomics	1
base	1
basin-of-attraction	1
batman	1
bayespeak	1
b-cell	1
begain	1
better-than-pca	1
bias	1
bilingual	1
biocaster	1
biochemical	1
bioconductorbuntu	1
biology	1
biomarker	1
biomechanic	1
bladder-cancer	1
blight	1
blimp1	1
body-surface	1
bowtie	1
bsmap	1
bs-seq	1
burrows-wheeler	1
bus	1
bws	1
bwt	1
calibration	1
callosum	1
calorie	1
capillary	1
case	1
cattle	1
cd4	1
cdna	1
c-elegans	1
census	1
cfi	1
cgh	1
chipdiff	1
chondrodysplasia	1
chr11	1
chr14	1
chr16	1
chr2	1
chromatin	1
chr-pairing	1
cis	1
cisgenome	1
citexplore	1
classic	1
cleaveland	1
clinical	1
cloudburst	1
cloud-computing	1
clustalw	1
clustering	1
c-myc	1
coding	1
coexpression	1
colon	1
columbia	1
column	1
combination	1
communication	1
comparison	1
computer-vision	1
contamination	1
context	1
corpus	1
correction	1
covariation	1
covering	1
cow	1
cross-hybridisation	1
crystal	1
csa	1
csb	1
csp	1
cyber-t	1
cycle	1
cytoskeleton	1
data-compression	1
david	1
ddct	1
deamination	1
decoding	1
defense	1
degradome	1
demethylase	1
denomination	1
differential	1
diprogb	1
disomy	1
distance	1
distribution	1
dna-computing	1
dna-demethylation	1
dna-encoding	1
dna-structure	1
dnmt1o	1
dotter	1
driving	1
ebi	1
ecology	1
edge-detection	1
editing	1
endocytosis	1
endogenous	1
endonuclease	1
energy-metabolism	1
enredo	1
epidemic	1
epidemiology	1
essay	1
est	1
europe	1
exonminer	1
exosome	1
experience	1
experimental	1
experiment-planning	1
factor	1
famine	1
fdr	1
fft	1
fish	1
force	1
fourier	1
fpgs	1
frequency	1
frobenius	1
f-seq	1
functional-genomics	1
fuzzy	1
gcrma	1
genebase	1
gene-ontology	1
gene-regulation	1
genotype	1
germcell-derivation	1
gfap	1
glia	1
glitr	1
gnasxl	1
gorilla	1
graph	1
growth	1
gtl2	1
gut	1
h13	1
h3k27me3	1
h3k4me2	1
h3k9me3	1
hadoop	1
hairpin	1
hamster	1
hapmap	1
hdac1	1
health	1
heart	1
hemisphere	1
herc3	1
herv	1
heterochromatin	1
h-factor	1
hippocampus	1
hits-clip	1
hmm	1
honey-bee	1
host	1
host-defense	1
host-gene	1
hrm	1
hst1	1
hypermethylation	1
hypothalamus	1
iceland	1
i-cite	1
icr	1
igf2r	1
image-analysis	1
immunoprecipitation	1
impact	1
induction	1
influenca	1
information-technology	1
initiation	1
innate	1
inpp5	1
inpp5f_v3	1
integer	1
interface	1
interploidy	1
inter-species	1
invertebrate	1
ips	1
ireland	1
isoform	1
iugr	1
john-mcgrath	1
jurkat	1
kaks	1
kcnk9	1
kcnq	1
kcnq1ot1	1
klf4	1
knock-out	1
knowledge	1
known	1
lamina	1
language	1
lap	1
lateralization	1
layout	1
left	1
library	1
life	1
lift	1
limma	1
linguistics	1
lissom	1
lit1	1
literature-search	1
loess	1
lsd1	1
lysine	1
macs	1
maldi-tof	1
ma-plot	1
mapreduce	1
markov	1
marsupial	1
mash-up	1
mass-spec	1
matlab	1
mbd2	1
medea	1
medical-imaging	1
medme	1
mee1	1
meeting-report	1
mef	1
melting-analysis	1
memory	1
metal	1
methylome	1
micro	1
microbiology	1
microflora	1
microrna	1
microscopy	1
migraine	1
minority-allele	1
mirna	1
mirna-target	1
mir-target	1
mitochondrium	1
mitosis	1
modification	1
molecular-biology	1
mom	1
monoallelic	1
monotreme	1
morpholino	1
mother	1
mouse-strain	1
mrfast	1
mrna	1
msci	1
msp	1
mtc	1
multiple-testing	1
multiz	1
mummer	1
mummergpu	1
mutant	1
nanotube	1
nap1l2	1
nap1l5	1
ndn	1
necdin	1
neural-progenitor	1
neuroblast	1
neuroblastoma	1
neuroendocrine	1
neurology	1
nlp	1
noise	1
non-coding	1
non-cpg	1
nondisjunction	1
non-synonymous	1
no-replicate	1
np95	1
npl3	1
nrd1	1
ntap	1
nuclease	1
nucleotide	1
nucleotide-distance	1
nucleus	1
obesity	1
object	1
oct3	1
olin	1
online	1
oocyte-culture	1
openid	1
openmp	1
open-source	1
optimization	1
organisation	1
organization	1
ortheus	1
orthopaedic	1
otago	1
p21	1
p53	1
pabc	1
paired-ends	1
pairing	1
panel-of-experts	1
pangea	1
parent-of-origin	1
particle	1
pass	1
patdmr	1
pattern-matching	1
paxgene	1
pca	1
peak-call	1
peg13	1
peg3as	1
permutation	1
perspective	1
phenotype	1
phenylalanine	1
phenylketonuria	1
phoneme	1
photoactive	1
phylofit	1
phylogenetic-tree	1
phylopattern	1
physics	1
pinc	1
pipeline	1
pirna	1
platelet	1
platypus	1
plier	1
plsom	1
point-correspondence	1
poisson	1
polyploidy	1
popres	1
population	1
potato	1
prdm9	1
preimplantation	1
probability	1
processing	1
programming	1
prokaryote	1
proliferation	1
prostate	1
protocol	1
psychology	1
pubmed	1
purification	1
purkinje	1
pyrosequencing	1
qtl	1
quantitative	1
radiation	1
radio	1
random	1
rapamycin	1
rasgrf1	1
rbf	1
r_bhc	1
read-coverage	1
reading	1
read-quality	1
real-time	1
rearrangement	1
recognition	1
recombination	1
reconstruction	1
regular-expression	1
regulation	1
replication	1
reproduction	1
researcherid	1
resource	1
restriction	1
retrotranscription	1
retrovirus	1
rhesus	1
rice	1
right	1
riken	1
ringo	1
rma	1
rna-degradation	1
rna-methylation	1
rna-stabilization	1
robertsonian	1
robotics	1
rpb4	1
rtanalyzer	1
ruby	1
sam	1
sangamo	1
satellite	1
scale-free	1
scf	1
science-publishing	1
search-engine	1
sediment	1
seed	1
selection	1
self-assembly	1
sense-antisense	1
sequence-polymorphism	1
sequenom	1
serotonin	1
sex-dependence	1
sfmbt2	1
sheep	1
shortread	1
short-reads	1
signal-processing	1
singapore	1
single	1
single-channel	1
sirna-design	1
snp-genotyping	1
snprn	1
somatic	1
sommer	1
som-of-soms	1
sox2	1
speciation	1
spectrum	1
spermatogenesis	1
spiking	1
srp20	1
srs	1
stamp	1
stella	1
sterility	1
stimulation	1
strand	1
substitution	1
substitution-rate	1
sulfide	1
superovulation	1
survey	1
swift	1
synapse	1
synonymous	1
synthetic-biology	1
t65h	1
tagdust	1
t-cell	1
temporal	1
test	1
tet1	1
text-mining	1
tfpi2	1
theory	1
tho	1
tiling-array	1
tlr9	1
tndm	1
tolvon	1
tongue	1
topography	1
topology	1
traffic	1
trans	1
transcription-factor	1
transgene	1
translation	1
transport	1
treat	1
trna	1
tsd	1
tsix	1
tutorial	1
ubc	1
umd	1
upd12	1
upd14	1
upd20	1
vaccine	1
variability	1
variation	1
virus	1
visual	1
visualization	1
vortex	1
wamidex	1
water	1
web20	1
webarraydb	1
wetland	1
wheat	1
wiggle-track	1
wilms	1
worm	1
wtd	1
xite	1
xset	1
zac1	1
zfp57	1
zim	1
zygote	1

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