ruvido's allostery [30 articles] Export

Recent papers added to ruvido's library classified by the tag allostery. You can also see everyone's allostery.

	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to allostery population_shifts protein by ruvido on 2008-10-28 08:07:49 as along with 8 people and 2 groups oteri bmduggan xdeupi okapi aqeel raik barry zwang structural_bioinformatics McCammon
	Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and lambda-Repressor with Cognate DNA Sequences [My Copy] Biophys. J., Vol. 88, No. 5. (1 May 2005), pp. 3147-3157. by Surjit B. Dixit, David Q. Andrews, D. L. Beveridge posted to allostery cap_dna dna by ruvido on 2008-09-15 10:57:26 as
	Catabolite activator protein: DNA binding and transcription activation [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 1. (February 2004), pp. 10-20. by Catherine L. Lawson, David Swigon, Katsuhiko S. Murakami, Seth A. Darst, Helen M. Berman, Richard H. Ebright posted to allostery cap cap_dna protein review by ruvido on 2008-09-15 10:56:08 as
	Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking [My Copy] Journal of Molecular Biology, Vol. 314, No. 1. (16 November 2001), pp. 75-82. by Shengfeng Chen, Angelo Gunasekera, Xiaoping Zhang, Thomas A. Kunkel, Richard H. Ebright, Helen M. Berman posted to allostery cap cap_dna protein by ruvido on 2008-09-15 10:54:44 as
	Structure of the CAP-DNA Complex at 2.5 Å Resolution: A Complete Picture of the Protein-DNA Interface [My Copy] Journal of Molecular Biology, Vol. 260, No. 3. (19 July 1996), pp. 395-408. by Gary Parkinson, Christopher Wilson, Angelo Gunasekera, Yon W. Ebright, Richard E. Ebright, Helen M. Berman posted to allostery cap cap_dna protein by ruvido on 2008-09-15 10:54:00 as
	Allostery and cooperativity revisited [My Copy] Protein Sci, Vol. 17, No. 8. (1 August 2008), pp. 1295-1307. by Qiang Cui, Martin Karplus posted to allostery dynamics protein by ruvido on 2008-09-12 11:20:02 as along with 3 people sdbneuro agrossfield tny
	Networks for the allosteric control of protein kinases [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 16, No. 6. (December 2006), pp. 686-692. by Zhengshuang Shi, Katheryn A. Resing, Natalie G. Ahn posted to allostery kinases by ruvido on 2008-09-02 09:07:48 as along with 2 people lna choonpeng
	Allosteric cooperativity in protein kinase A [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 506-511. by Larry R. Masterson, Alessandro Mascioni, Nathaniel J. Traaseth, Susan S. Taylor, Gianluigi Veglia posted to allostery kinases by ruvido on 2008-09-02 09:06:58 as along with 2 people and 1 group cactus sobolevnrm baker-group
	Allostery: an illustrated definition for the 'second secret of life' [My Copy] Trends in biochemical sciences (13 August 2008) by Aron W W. Fenton posted to allostery review by ruvido on 2008-08-25 09:36:27 as along with 1 person and 2 groups barry structural_bioinformatics McCammon
	Catabolite Activator Protein in Aqueous Solution: A Molecular Simulation Study [My Copy] J. Phys. Chem. B, Vol. 111, No. 6. (15 February 2007), pp. 1496-1501. by M. Berrera, S. Pantano, P. Carloni posted to allostery cap dna by ruvido on 2008-03-11 07:39:36 as
	Allosteric transition pathways in the lactose repressor protein core domains: asymmetric motions in a homodimer. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2523-2541. by T. C. Flynn, L. Swint-Kruse, Y. Kong, C. Booth, K. S. Matthews, J. Ma posted to allostery asimmetry tmd by ruvido on 2008-02-22 12:49:25 as along with 1 person lna
	The Allosteric Mechanism of Yeast Chorismate Mutase: A Dynamic Analysis [My Copy] Journal of Molecular Biology, Vol. 356, No. 1. (10 February 2006), pp. 237-247. by Yifei Kong, Jianpeng Ma, Martin Karplus, William N. Lipscomb posted to allostery tmd by ruvido on 2008-02-22 12:05:19 as along with 2 people and 2 groups barry higueruelo structural_bioinformatics Bioinformatics
	Role of residue 138 in the interdomain hinge region in transmitting allosteric signals for DNA binding in Escherichia coli cAMP receptor protein. [My Copy] Biochemistry, Vol. 43, No. 16. (27 April 2004), pp. 4662-4669. by S. Yu, J. C. Lee posted to allostery cap dynamics mutations by ruvido on 2008-02-22 10:03:43 as
	A linear correlation between the energetics of allosteric communication and protein flexibility in the Escherichia coli cyclic AMP receptor protein revealed by mutation-induced changes in compressibility and amide hydrogen-deuterium exchange. [My Copy] Biochemistry, Vol. 43, No. 13. (6 April 2004), pp. 3844-3852. by K. Gekko, N. Obu, J. Li, J. C. Lee posted to allostery cap dynamics mutations by ruvido on 2008-02-22 09:56:17 as
	Structure and dynamics of the modular halves of Escherichia coli cyclic AMP receptor protein. [My Copy] Biochemistry, Vol. 41, No. 50. (17 December 2002), pp. 14771-14778. by J. Li, X. Cheng, J. C. Lee posted to allostery cap dynamics by ruvido on 2008-02-22 09:44:24 as
	Communications between the high-affinity cyclic nucleotide binding sites in E. coli cyclic AMP receptor protein: effect of single site mutations. [My Copy] Biochemistry, Vol. 41, No. 39. (1 October 2002), pp. 11857-11867. by S. H. Lin, J. C. Lee posted to allostery cap kinetics by ruvido on 2008-02-22 09:33:56 as
	Ligand-induced conformational and structural dynamics changes in Escherichia coli cyclic AMP receptor protein. [My Copy] Biochemistry, Vol. 41, No. 21. (28 May 2002), pp. 6660-6667. by A. Dong, J. M. Malecki, L. Lee, J. F. Carpenter, J. C. Lee posted to allostery cap dynamics by ruvido on 2008-02-22 08:26:36 as
	Structural Understanding of the Allosteric Conformational Change of Cyclic AMP Receptor Protein by Cyclic AMP Binding [My Copy] Biochemistry, Vol. 39, No. 45. (14 November 2000), pp. 13953-13962. by H. S. Won, T. Yamazaki, T. W. Lee, et al.M. K. Yoon, S. H. Park, Y. Kyogoku, B. J. Lee posted to allostery cap by ruvido on 2008-02-22 08:23:38 as
	Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution. [My Copy] J Mol Biol, Vol. 304, No. 5. (15 December 2000), pp. 847-859. by J. M. Passner, S. C. Schultz, T. A. Steitz posted to allostery cap xray by ruvido on 2008-02-18 10:21:49 as along with 1 person kgutwin
	Coarse-grained model of entropic allostery. [My Copy] Phys Rev Lett, Vol. 93, No. 9. (27 August 2004) by R. J. Hawkins, T. C. McLeish posted to allostery entropy by ruvido on 2007-12-29 19:58:30 as along with 2 people lna higueruelo
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to allostery dynamics by ruvido on 2007-12-29 19:42:20 as along with 10 people and 4 groups allmensch jrperillaj barry aqeel cactus sobolevnrm jennifermbui higueruelo LamBras jmccammon structural_bioinformatics Bioinformatics baker-group McCammon
	A Computational Investigation of Allostery in the Catabolite Activator Protein [My Copy] J. Am. Chem. Soc., Vol. 129, No. 50. (19 December 2007), pp. 15668-15676. by L. Li, V. N. Uversky, A. K. Dunker, S. O. Meroueh posted to allostery cap by ruvido on 2007-12-29 14:30:54 as along with 1 person and 1 group sobolevnrm baker-group
	Structural Model of the R State of Escherichia coli Aspartate Transcarbamoylase with Substrates Bound [My Copy] Journal of Molecular Biology, Vol. 371, No. 5. (31 August 2007), pp. 1261-1273. by Jie Wang, Joby Eldo, Evan R. Kantrowitz posted to allostery catalysis enzyme by ruvido on 2007-08-09 14:39:45 as
	R-state Haemoglobin with Low Oxygen Affinity: Crystal Structures of Deoxy Human and Carbonmonoxy Horse Haemoglobin Bound to the Effector Molecule L35 [My Copy] Journal of Molecular Biology, Vol. 356, No. 3. (24 February 2006), pp. 790-801. by Takeshi Yokoyama, Saburo Neya, Antonio Tsuneshige, Takashi Yonetani, Sam-Yong Park, Jeremy R. Tame posted to allostery hemoglobin by ruvido on 2007-07-12 16:33:33 as
	Global Allostery Model of Hemoglobin. MODULATION OF O2 AFFINITY, COOPERATIVITY, AND BOHR EFFECT BY HETEROTROPIC ALLOSTERIC EFFECTORS [My Copy] J. Biol. Chem., Vol. 277, No. 37. (6 September 2002), pp. 34508-34520. by Takashi Yonetani, Sungick Park, Antonio Tsuneshige, Kiyohiro Imai, Kenji Kanaori posted to allostery hemoglobin by ruvido on 2007-05-08 18:17:47 as
	Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12020-12025. by H. Pan, J. C. Lee, V. J. Hilser posted to allostery dhfr by ruvido on 2007-05-08 18:11:55 as along with 2 people lna dgront
	New insights into allosteric mechanisms from trapping unstable protein conformations in silica gels [My Copy] PNAS, Vol. 101, No. 40. (5 October 2004), pp. 14414-14419. by Cristiano Viappiani, Stefano Bettati, Stefano Bruno, et al.Luca Ronda, Stefania Abbruzzetti, Andrea Mozzarelli, William A. Eaton posted to allostery hemoglobin mwc population_shifts by ruvido on 2007-05-08 17:54:16 as
	A tertiary two-state allosteric model for hemoglobin [My Copy] Biophysical Chemistry, Vol. 98, No. 1-2. (10 July 2002), pp. 149-164. by Eric R. Henry, Stefano Bettati, James Hofrichter, William A. Eaton posted to allostery hemoglobin mwc population_shifts by ruvido on 2007-05-08 17:48:36 as
	Is allostery an intrinsic property of all dynamic proteins? [My Copy] Proteins, Vol. 57, No. 3. (15 November 2004), pp. 433-443. by K. Gunasekaran, B. Ma, R. Nussinov posted to allostery population_shifts by ruvido on 2007-05-04 15:15:25 as along with 6 people richardbickerton lna gbart leemary4 choonpeng cactus
	The changing landscape of protein allostery. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 1. (February 2006), pp. 102-108. by J. F. Swain, L. M. Gierasch posted to allostery population_shifts by ruvido on 2007-05-04 15:12:46 as along with 4 people nigham lna choonpeng mottonen

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chapter	60
ppi	44
dynamics	34
protein	32
allostery	30
dhfr	25
subdiffusion	24
water	22
energy_landscape	19
enzyme	18
folding	18
kinetics	17
review	17
free-energy	16
cap	15
simulation	15
binding	14
catalysis	13
protein-interactions	12
nmr	11
fractals	10
hierarchy	10
population_shifts	10
genome	9
hemoglobin	8
md	8
network	8
cap_dna	7
conformation	7
experimental	7
gpu	7
random_walk	7
dna	6
ligands	6
models	6
motion	5
mutations	5
transition	5
xray	5
algorithm	4
chemistry	4
clusterization	4
d4	4
docking	4
entropy	4
molecular_dynamics	4
myoglobin	4
shaw	4
tmd	4
acetyl	3
channel	3
dihedrals	3
networks	3
nma	3
normal_modes	3
relaxation_dispersion	3
structure	3
thermodynamics	3
vibrational_modes	3
alaninedipeptide	2
barrier	2
capri	2
complex	2
database	2
denatured	2
flory	2
kinases	2
landscape	2
mwc	2
side-chains	2
spectroscopy	2
state	2
temperature	2
tse	2
x-ray	2
alanine__scanning	1
analysis	1
asimmetry	1
b-factors	1
biology	1
book	1
charmm	1
clustering	1
community	1
comparison	1
computation	1
computational	1
cups	1
cyclophilin	1
ferrys_law	1
flexibility	1
gene_fusion	1
history	1
homology	1
homology_modelling	1
markov	1
master_equation	1
modularity	1
molecular	1
moore	1
other	1
pathways	1
pca	1
physical_chemistry	1
physics	1
pmf	1
prediction	1
profile	1
proteins	1
psichology	1
qmm	1
religion	1
remd	1
rmsd_restraints	1
rna	1
rubik	1
sampling	1
solvation	1
system-biology	1
target	1
wall	1

ruvido's allostery [30 articles] Export

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