ruvido's dynamics [34 articles] Export

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	Probing Single-Molecule T4 Lysozyme Conformational Dynamics by Intramolecular Fluorescence Energy Transfer [My Copy] The Journal of Physical Chemistry B, Vol. 107, No. 31. (1 August 2003), pp. 7947-7956. by Yu Chen, Dehong Hu, Erich R. Vorpagel, H. Peter Lu posted to dynamics experimental protein subdiffusion by ruvido on 2008-11-25 17:12:31 as along with 1 person quanwang
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:45:36 as along with 12 people and 1 group saravan ahmetbakan xdeupi ubcg08l barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 yalexeev baker-group
	A hierarchy of timescales in protein dynamics is linked to enzyme catalysis [My Copy] Nature (18 November 2007) by Katherine A. Henzler-Wildman, Ming Lei, Vu Thai, Jordan S. Kerns, Martin Karplus, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:44:58 as along with 9 people and 1 group Diego_Prada tmmurali allmensch cactus sobolevnrm jlh64 RamuAnandakrishnan dmobley chenway baker-group
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:43:50 as along with 18 people and 1 group saravan Diego_Prada xdeupi viktor21614 barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	Protein Dynamical Transition Does Not Require Protein Structure [My Copy] Physical Review Letters, Vol. 101, No. 17. (2008), 178103. by Yunfen He, Pei I. Ku, J. R. Knab, J. Y. Chen, A. G. Markelz posted to dynamics protein by ruvido on 2008-10-24 08:08:36 as
	Metastable States as a Key to the Dynamics of Supercooled Liquids [My Copy] Physical Review Letters, Vol. 84, No. 10. (6 March 2000), 2168. by Stephan Büchner, Andreas Heuer posted to dynamics energy_landscape by ruvido on 2008-10-16 14:56:46 as
	A Topographic View of Supercooled Liquids and Glass Formation [My Copy] Science, Vol. 267, No. 5206. (31 March 1995), pp. 1935-1939. by Frank H. Stillinger posted to dynamics energy_landscape subdiffusion by ruvido on 2008-10-16 09:43:43 as along with 5 people Diego_Prada cgguido kedmond weeks dchen
	Trap Models and Slow Dynamics in Supercooled Liquids [My Copy] Physical Review Letters, Vol. 90, No. 2. (17 January 2003), 025503. by Aldrin R. Denny, David R. Reichman, Jean-Philippe Bouchaud posted to dynamics subdiffusion by ruvido on 2008-10-15 16:11:48 as
	Allostery and cooperativity revisited [My Copy] Protein Sci, Vol. 17, No. 8. (1 August 2008), pp. 1295-1307. by Qiang Cui, Martin Karplus posted to allostery dynamics protein by ruvido on 2008-09-12 11:20:02 as along with 3 people sdbneuro agrossfield tny
	Stochastic modeling in nanoscale biophysics: Subdiffusion within proteins [My Copy] (24 Jul 2008) by S. C. Kou posted to dynamics models protein subdiffusion by ruvido on 2008-09-09 09:41:54 as along with 1 person dah
	Dynamic Distance Disorder in Proteins Is Caused by Trapping [My Copy] J. Phys. Chem. B, Vol. 110, No. 19. (18 May 2006), pp. 9363-9367. by G. Luo, I. Andricioaei, X. S. Xie, M. Karplus posted to dynamics protein subdiffusion by ruvido on 2008-09-04 15:01:00 as along with 1 person allmensch
	$My PDF kneller_04_fractional.pdf$ Fractional Brownian dynamics in proteins [My Copy] The Journal of Chemical Physics, Vol. 121, No. 20. (2004), pp. 10278-10283. by G. R. Kneller, K. Hinsen posted to dynamics protein subdiffusion by ruvido on 2008-09-04 14:35:32 as
	Generalized Langevin Equation with Fractional Gaussian Noise: Subdiffusion within a Single Protein Molecule [My Copy] Physical Review Letters, Vol. 93, No. 18. (29 October 2004), 180603. by S. C. Kou, Sunney X. Xie posted to dynamics protein subdiffusion by ruvido on 2008-09-04 14:33:58 as
	Protein states and proteinquakes. [My Copy] Proc Natl Acad Sci U S A, Vol. 82, No. 15. (August 1985), pp. 5000-5004. by A. Ansari, J. Berendzen, S. F. Bowne, et al.H. Frauenfelder, I. E. Iben, T. B. Sauke, E. Shyamsunder, R. D. Young posted to dynamics energy_landscape experimental hierarchy models by ruvido on 2008-08-25 13:50:51 as along with 2 people aqeel kjell
	Rate theories and puzzles of hemeprotein kinetics [My Copy] Science, Vol. 229, No. 4711. (26 July 1985), pp. 337-345. by H. Frauenfelder, P. G. Wolynes posted to dynamics energy_landscape experimental hierarchy by ruvido on 2008-08-25 12:03:27 as
	Conformational Substates in Proteins [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 17, No. 1. (1988), pp. 451-479. by H. Frauenfelder, F. Parak, R. D. Young posted to dynamics energy_landscape experimental hierarchy by ruvido on 2008-08-25 12:02:13 as along with 1 person FilipeMaia
	Looking into the energy landscape of myoglobin [My Copy] Nat Struct Mol Biol, Vol. 2, No. 10. (October 1995), pp. 848-851. by Thorn D. Leeson, D. A. Wiersma posted to dynamics energy_landscape hierarchy protein by ruvido on 2008-08-25 11:52:41 as along with 1 person alexfuerstenberg
	Complexity in proteins [My Copy] Nat Struct Mol Biol, Vol. 2, No. 10. (October 1995), pp. 821-823. by Hans Frauenfelder posted to dynamics hierarchy protein by ruvido on 2008-08-25 11:50:00 as along with 1 person alexfuerstenberg
	Multi-basin dynamics of a protein in a crystal environment [My Copy] Physica D: Nonlinear Phenomena In 16th Annual International Conference of the Center for Nonlinear Studies, Vol. 107, No. 2-4. (1 September 1997), pp. 225-239. by Angel E. García, Raphael Blumenfeld, Gerhard Hummer, James A. Krumhansl posted to dynamics hierarchy protein subdiffusion by ruvido on 2008-08-25 11:12:58 as along with 1 person scampos
	Constrained spin-dynamics description of random walks on hierarchical scale-free networks [My Copy] Physical Review E, Vol. 69, No. 3. (23 March 2004), 036111. by Jae D. Noh, Heiko Rieger posted to dynamics fractals networks subdiffusion by ruvido on 2008-08-21 18:54:22 as
	Dynamics on Ultrametric Spaces [My Copy] Physical Review Letters, Vol. 55, No. 15. (7 October 1985), 1634. by Andrew T. Ogielski, D. L. Stein posted to dynamics fractals models subdiffusion by ruvido on 2008-08-21 18:43:58 as along with 1 person alexphys
	Continuous-Time Random Walks on Fractals [My Copy] Physical Review Letters, Vol. 53, No. 14. (1 October 1984), 1301. by A. Blumen, J. Klafter, B. S. White, G. Zumofen posted to dynamics fractals models subdiffusion by ruvido on 2008-08-21 18:41:13 as
	Hierarchical structure of the energy landscape of proteins revisited by time series analysis. II. Investigation of explicit solvent effects [My Copy] The Journal of Chemical Physics, Vol. 123, No. 14. (2005) by Burak Alakent, Mehmet C. Camurdan, Pemra Doruker posted to dynamics hierarchy protein subdiffusion by ruvido on 2008-08-21 18:16:13 as
	Hierarchical structure of the energy landscape of proteins revisited by time series analysis. I. Mimicking protein dynamics in different time scales [My Copy] The Journal of Chemical Physics, Vol. 123, No. 14. (2005) by Burak Alakent, Mehmet C. Camurdan, Pemra Doruker posted to dynamics hierarchy protein subdiffusion by ruvido on 2008-08-21 18:15:42 as
	Anomalous Diffusion and Relaxation Close to Thermal Equilibrium: A Fractional Fokker-Planck Equation Approach [My Copy] Physical Review Letters, Vol. 82, No. 18. (3 May 1999), 3563. by Ralf Metzler, Eli Barkai, Joseph Klafter posted to dynamics subdiffusion by ruvido on 2008-08-19 14:06:34 as
	Protein Conformational Dynamics Probed by Single-Molecule Electron Transfer [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 262-266. by Haw Yang, Guobin Luo, Pallop Karnchanaphanurach, et al.Tai-Man Louie, Ivan Rech, Sergio Cova, Luying Xun, Sunney X. Xie posted to dynamics experimental subdiffusion by ruvido on 2008-08-19 13:14:51 as along with 2 people and 1 group toerst alexfuerstenberg moernerlab
	Protein dynamics and 1/f noise. [My Copy] Biophys. J., Vol. 63, No. 2. (1 August 1992), pp. 594-598. by T. G. Dewey, J. G. Bann posted to dynamics fractals protein by ruvido on 2008-05-21 16:14:20 as along with 1 person wilbur
	$My PDF dewey_97_fractals.pdf$ Fractals in Molecular Biophysics [My Copy] Oxford University Press In Fractals in Molecular Biophysics (1997) by Thomas G. Dewey posted to dynamics fractals protein by ruvido on 2008-05-21 15:54:47 as
	Probing dynamical disorder kinetics with chemical relaxation techniques [My Copy] Chemical Physics, Vol. 161, No. 3. (15 April 1992), pp. 339-350. by Gregory T. Dewey posted to dynamics fractals protein by ruvido on 2008-05-21 15:51:28 as
	Role of residue 138 in the interdomain hinge region in transmitting allosteric signals for DNA binding in Escherichia coli cAMP receptor protein. [My Copy] Biochemistry, Vol. 43, No. 16. (27 April 2004), pp. 4662-4669. by S. Yu, J. C. Lee posted to allostery cap dynamics mutations by ruvido on 2008-02-22 10:03:43 as
	A linear correlation between the energetics of allosteric communication and protein flexibility in the Escherichia coli cyclic AMP receptor protein revealed by mutation-induced changes in compressibility and amide hydrogen-deuterium exchange. [My Copy] Biochemistry, Vol. 43, No. 13. (6 April 2004), pp. 3844-3852. by K. Gekko, N. Obu, J. Li, J. C. Lee posted to allostery cap dynamics mutations by ruvido on 2008-02-22 09:56:17 as
	Structure and dynamics of the modular halves of Escherichia coli cyclic AMP receptor protein. [My Copy] Biochemistry, Vol. 41, No. 50. (17 December 2002), pp. 14771-14778. by J. Li, X. Cheng, J. C. Lee posted to allostery cap dynamics by ruvido on 2008-02-22 09:44:24 as
	Ligand-induced conformational and structural dynamics changes in Escherichia coli cyclic AMP receptor protein. [My Copy] Biochemistry, Vol. 41, No. 21. (28 May 2002), pp. 6660-6667. by A. Dong, J. M. Malecki, L. Lee, J. F. Carpenter, J. C. Lee posted to allostery cap dynamics by ruvido on 2008-02-22 08:26:36 as
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to allostery dynamics by ruvido on 2007-12-29 19:42:20 as along with 10 people and 4 groups allmensch jrperillaj barry aqeel cactus sobolevnrm jennifermbui higueruelo LamBras jmccammon structural_bioinformatics Bioinformatics baker-group McCammon

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chapter	60
ppi	44
dynamics	34
protein	32
allostery	30
dhfr	25
subdiffusion	24
water	22
energy_landscape	19
enzyme	18
folding	18
kinetics	17
review	17
free-energy	16
cap	15
simulation	15
binding	14
catalysis	13
protein-interactions	12
nmr	11
fractals	10
hierarchy	10
population_shifts	10
genome	9
hemoglobin	8
md	8
network	8
cap_dna	7
conformation	7
experimental	7
gpu	7
random_walk	7
dna	6
ligands	6
models	6
motion	5
mutations	5
transition	5
xray	5
algorithm	4
chemistry	4
clusterization	4
d4	4
docking	4
entropy	4
molecular_dynamics	4
myoglobin	4
shaw	4
tmd	4
acetyl	3
channel	3
dihedrals	3
networks	3
nma	3
normal_modes	3
relaxation_dispersion	3
structure	3
thermodynamics	3
vibrational_modes	3
alaninedipeptide	2
barrier	2
capri	2
complex	2
database	2
denatured	2
flory	2
kinases	2
landscape	2
mwc	2
side-chains	2
spectroscopy	2
state	2
temperature	2
tse	2
x-ray	2
alanine__scanning	1
analysis	1
asimmetry	1
b-factors	1
biology	1
book	1
charmm	1
clustering	1
community	1
comparison	1
computation	1
computational	1
cups	1
cyclophilin	1
ferrys_law	1
flexibility	1
gene_fusion	1
history	1
homology	1
homology_modelling	1
markov	1
master_equation	1
modularity	1
molecular	1
moore	1
other	1
pathways	1
pca	1
physical_chemistry	1
physics	1
pmf	1
prediction	1
profile	1
proteins	1
psichology	1
qmm	1
religion	1
remd	1
rmsd_restraints	1
rna	1
rubik	1
sampling	1
solvation	1
system-biology	1
target	1
wall	1

ruvido's dynamics [34 articles] Export

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