ruvido's folding [18 articles] Export

Recent papers added to ruvido's library classified by the tag folding. You can also see everyone's folding.

	One-Dimensional Barrier-Preserving Free-Energy Projections of a β-sheet Miniprotein: New Insights into the Folding Process [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 29. (1 July 2008), pp. 8701-8714. by Sergei V. Krivov, Stefanie Muff, Amedeo Caflisch, Martin Karplus posted to profile md landscape folding by ruvido on 2009-09-24 14:26:46 as
	Kinetic pathways of beta-hairpin (un)folding in explicit solvent. [My Copy] Biophys J, Vol. 88, No. 1. (January 2005), pp. 50-61. by P. G. Bolhuis posted to folding free-energy kinetics transition by ruvido on 2008-03-10 18:07:00 as along with 2 people paddydu Diego_Prada
	Peptide Folding Kinetics from Replica Exchange Molecular Dynamics [My Copy] (11 Feb 2008) by Nicolae-Viorel Buchete, Gerhard Hummer posted to folding kinetics master_equation by ruvido on 2008-03-10 13:30:51 as
	Coarse Master Equations for Peptide Folding Dynamics [My Copy] J. Phys. Chem. B (31 January 2008) by N. V. Buchete, G. Hummer posted to energy_landscape folding free-energy by ruvido on 2008-02-29 18:37:22 as along with 3 people and 1 group Diego_Prada apaydin sobolevnrm baker-group
	Energetics of intersubunit and intrasubunit interactions of Escherichia coli adenosine cyclic 3',5'-phosphate receptor protein. [My Copy] Biochemistry, Vol. 32, No. 32. (17 August 1993), pp. 8130-8139. by X. Cheng, M. L. Gonzalez, J. C. Lee posted to cap folding by ruvido on 2008-02-22 10:00:24 as
	Multiscale complex network of protein conformational fluctuations in single-molecule time series [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 536-541. by Chun-Biu Li, Haw Yang, Tamiki Komatsuzaki posted to folding free-energy landscape by ruvido on 2008-02-21 09:43:21 as along with 4 people and 1 group Diego_Prada sobolevnrm biehl hsekiguc baker-group
	Probing Protein Fold Space with a Simplified Model [My Copy] Journal of Molecular Biology, Vol. 375, No. 4. (25 January 2008), pp. 920-933. by Peter Minary, Michael Levitt posted to folding free-energy by ruvido on 2008-01-04 10:41:28 as along with 1 person nh
	Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 13916-13921. by Y. Z. Ohkubo, C. L. Brooks posted to d4 flory folding by ruvido on 2007-04-19 13:22:19 as along with 1 person pjkiley
	Diffusive Model of Protein Folding Dynamics with Kramers Turnover in Rate [My Copy] Physical Review Letters, Vol. 96, No. 22. (2006) by Robert B. Best, Gerhard Hummer posted to folding by ruvido on 2007-02-15 13:11:40 as
	Natively unfolded proteins: A point where biology waits for physics [My Copy] Protein Science, Vol. 11, No. 4. (1 April 2002), pp. 739-756. by Vladimir N. Uversky posted to denatured folding by ruvido on 2007-02-14 15:19:54 as along with 5 people yxue allmensch Evangelia cactus ARobson
	Simulation of conformational transitions by the restricted perturbation-targeted molecular dynamics method. [My Copy] J Chem Phys, Vol. 122, No. 11. (15 March 2005) by A. van der Vaart, M. Karplus posted to dihedrals folding md protein target transition by ruvido on 2006-12-22 11:26:26 as along with 1 person nigham
	Unfolded proteins and protein folding studied by NMR. [My Copy] Chem Rev, Vol. 104, No. 8. (August 2004), pp. 3607-3622. by H. J. Dyson, P. E. Wright posted to denatured folding nmr by ruvido on 2006-12-20 12:17:01 as along with 3 people laurenm allmensch yxue
	The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 23. (7 November 2000), pp. 12565-12570. by R. V. Pappu, R. Srinivasan, G. D. Rose posted to d4 dihedrals flory folding by ruvido on 2006-12-20 12:15:59 as along with 1 person allmensch
	On Side-Chain Conformational Entropy of Proteins [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (December 2006) by J. Zhang, J. S. Liu posted to d4 dihedrals entropy folding side-chains by ruvido on 2006-12-20 12:13:40 as along with 1 person allmensch
	New tools provide new insights in NMR studies of protein dynamics. [My Copy] Science, Vol. 312, No. 5771. (2006), pp. 224-8. by A. Mittermaier, L. E. Kay posted to chemistry conformation dhfr enzyme folding kinetics motion nmr temperature thermodynamics by ruvido on 2006-12-19 14:24:52 as
	Folding and binding cascades: dynamic landscapes and population shifts. [My Copy] Protein Sci, Vol. 9, No. 1. (2000), pp. 10-9. by S. Kumar, B. Ma, C. J. Tsai, N. Sinha, R. Nussinov posted to binding conformation folding models molecular protein dhfr by ruvido on 2006-12-19 14:24:51 as
	Phi-value analysis by molecular dynamics simulations of reversible folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 628-633. by G. Settanni, F. Rao, A. Caflisch posted to folding md simulation state transition tse by ruvido on 2006-12-19 14:19:12 as along with 2 people apaydin allmensch
	The protein folding network. [My Copy] J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 299-306. by F. Rao, A. Caflisch posted to folding md network simulation state transition tse by ruvido on 2006-12-19 09:59:53 as along with 6 people and 1 group camster apaydin allmensch jlh64 nh Diego_Prada dbk-lab

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chapter	60
ppi	44
dynamics	34
protein	32
allostery	30
dhfr	25
subdiffusion	24
water	22
energy_landscape	19
enzyme	18
folding	18
kinetics	17
review	17
free-energy	16
cap	15
simulation	15
binding	14
catalysis	13
protein-interactions	12
nmr	11
fractals	10
hierarchy	10
population_shifts	10
genome	9
hemoglobin	8
md	8
network	8
cap_dna	7
conformation	7
experimental	7
gpu	7
random_walk	7
dna	6
ligands	6
models	6
motion	5
mutations	5
transition	5
xray	5
algorithm	4
chemistry	4
clusterization	4
d4	4
docking	4
entropy	4
molecular_dynamics	4
myoglobin	4
shaw	4
tmd	4
acetyl	3
channel	3
dihedrals	3
networks	3
nma	3
normal_modes	3
relaxation_dispersion	3
structure	3
thermodynamics	3
vibrational_modes	3
alaninedipeptide	2
barrier	2
capri	2
complex	2
database	2
denatured	2
flory	2
kinases	2
landscape	2
mwc	2
side-chains	2
spectroscopy	2
state	2
temperature	2
tse	2
x-ray	2
alanine__scanning	1
analysis	1
asimmetry	1
b-factors	1
biology	1
book	1
charmm	1
clustering	1
community	1
comparison	1
computation	1
computational	1
cups	1
cyclophilin	1
ferrys_law	1
flexibility	1
gene_fusion	1
history	1
homology	1
homology_modelling	1
markov	1
master_equation	1
modularity	1
molecular	1
moore	1
other	1
pathways	1
pca	1
physical_chemistry	1
physics	1
pmf	1
prediction	1
profile	1
proteins	1
psichology	1
qmm	1
religion	1
remd	1
rmsd_restraints	1
rna	1
rubik	1
sampling	1
solvation	1
system-biology	1
target	1
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ruvido's folding [18 articles] Export

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