ruvido's md [8 articles] Export

Recent papers added to ruvido's library classified by the tag md. You can also see everyone's md.

	One-Dimensional Barrier-Preserving Free-Energy Projections of a β-sheet Miniprotein: New Insights into the Folding Process [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 29. (1 July 2008), pp. 8701-8714. by Sergei V. Krivov, Stefanie Muff, Amedeo Caflisch, Martin Karplus posted to profile md landscape folding by ruvido on 2009-09-24 14:26:46 as
	Molecular Dynamics Simulations of the Gramicidin Channel [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 23, No. 1. (1994), pp. 731-761. by B. Roux, M. Karplus posted to channel md by ruvido on 2008-10-23 13:41:59 as
	arXiv:0709.3225 Harvesting graphics power for MD simulations [My Copy] posted to computation gpu md by ruvido on 2008-01-11 19:15:47 as along with 1 person yalexeev
	Simulation of conformational transitions by the restricted perturbation-targeted molecular dynamics method. [My Copy] J Chem Phys, Vol. 122, No. 11. (15 March 2005) by A. van der Vaart, M. Karplus posted to dihedrals folding md protein target transition by ruvido on 2006-12-22 11:26:26 as along with 1 person nigham
	Impact of distal mutations on the network of coupled motions correlated to hydride transfer in dihydrofolate reductase. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 19. (10 May 2005), pp. 6807-6812. by K. F. Wong, T. Selzer, S. J. Benkovic, S. Hammes-Schiffer posted to binding catalysis chemistry dhfr enzyme kinetics ligands md motion mutations simulation by ruvido on 2006-12-21 14:23:16 as
	Correlated motion and the effect of distal mutations in dihydrofolate reductase. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 12. (10 June 2003), pp. 6980-6985. by T. H. Rod, J. L. Radkiewicz, C. L. Brooks posted to binding catalysis chemistry dhfr enzyme ligands md motion mutations protein simulation by ruvido on 2006-12-21 14:20:49 as
	Phi-value analysis by molecular dynamics simulations of reversible folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 628-633. by G. Settanni, F. Rao, A. Caflisch posted to folding md simulation state transition tse by ruvido on 2006-12-19 14:19:12 as along with 2 people apaydin allmensch
	The protein folding network. [My Copy] J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 299-306. by F. Rao, A. Caflisch posted to folding md network simulation state transition tse by ruvido on 2006-12-19 09:59:53 as along with 6 people and 1 group camster apaydin allmensch jlh64 nh Diego_Prada dbk-lab

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chapter	60
ppi	44
dynamics	34
protein	32
allostery	30
dhfr	25
subdiffusion	24
water	22
energy_landscape	19
enzyme	18
folding	18
kinetics	17
review	17
free-energy	16
cap	15
simulation	15
binding	14
catalysis	13
protein-interactions	12
nmr	11
fractals	10
hierarchy	10
population_shifts	10
genome	9
hemoglobin	8
md	8
network	8
cap_dna	7
conformation	7
experimental	7
gpu	7
random_walk	7
dna	6
ligands	6
models	6
motion	5
mutations	5
transition	5
xray	5
algorithm	4
chemistry	4
clusterization	4
d4	4
docking	4
entropy	4
molecular_dynamics	4
myoglobin	4
shaw	4
tmd	4
acetyl	3
channel	3
dihedrals	3
networks	3
nma	3
normal_modes	3
relaxation_dispersion	3
structure	3
thermodynamics	3
vibrational_modes	3
alaninedipeptide	2
barrier	2
capri	2
complex	2
database	2
denatured	2
flory	2
kinases	2
landscape	2
mwc	2
side-chains	2
spectroscopy	2
state	2
temperature	2
tse	2
x-ray	2
alanine__scanning	1
analysis	1
asimmetry	1
b-factors	1
biology	1
book	1
charmm	1
clustering	1
community	1
comparison	1
computation	1
computational	1
cups	1
cyclophilin	1
ferrys_law	1
flexibility	1
gene_fusion	1
history	1
homology	1
homology_modelling	1
markov	1
master_equation	1
modularity	1
molecular	1
moore	1
other	1
pathways	1
pca	1
physical_chemistry	1
physics	1
pmf	1
prediction	1
profile	1
proteins	1
psichology	1
qmm	1
religion	1
remd	1
rmsd_restraints	1
rna	1
rubik	1
sampling	1
solvation	1
system-biology	1
target	1
wall	1

ruvido's md [8 articles] Export

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