ruvido's ppi [44 articles] Export

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	KEGG: Kyoto Encyclopedia of Genes and Genomes [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 27-30. by Minoru Kanehisa, Susumu Goto posted to chapter database ppi by ruvido on 2008-04-10 15:32:02 as along with 20 people mauriceccy akshayk jeremymiller cgaugain VGreiff karinlag sgoetz namunet csanford dquest j3xucite fisherp koerner noby naegele katerinakal grottenolm Evangelia natstreet jerome_ucsf_slb
	BIND--The Biomolecular Interaction Network Database [My Copy] Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 242-245. by Gary D. Bader, Ian Donaldson, Cheryl Wolting, B. Francis F. Ouellette, Tony Pawson, Christopher W. V. Hogue posted to chapter database ppi by ruvido on 2008-04-10 15:30:32 as along with 5 people stharward wnpx blackbart carlk satre
	From words to literature in structural proteomics. [My Copy] Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225. by A. Sali, R. Glaeser, T. Earnest, W. Baumeister posted to chapter ppi review by ruvido on 2008-04-10 15:12:55 as along with 6 people tomhebbron bicko chad_davis dgront lpfernandes higueruelo
	Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 A Resolution [My Copy] Cell, Vol. 98, No. 6. (17 September 1999), pp. 811-824. by Gongyi Zhang, Elizabeth A. Campbell, Leonid Minakhin, Catherine Richter, Konstantin Severinov, Seth A. Darst posted to chapter ppi xray by ruvido on 2008-04-09 18:05:15 as
	The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 A Resolution [My Copy] Science, Vol. 289, No. 5481. (11 August 2000), pp. 905-920. by Nenad Ban, Poul Nissen, Jeffrey Hansen, Peter B. Moore, Thomas A. Steitz posted to chapter ppi xray by ruvido on 2008-04-09 18:03:20 as along with 5 people and 1 group A_Coletta_Thesis cactus mirkocortese P2324548 eckart_bindewald Structural Biology Group TorVergata
	Identification of protein-protein interfaces by decreased amide proton solvent accessibility. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14705-14710. by J. G. Mandell, A. M. Falick, E. A. Komives posted to chapter nmr ppi by ruvido on 2008-04-09 18:00:44 as
	Filtering and selection of structural models: combining docking and NMR. [My Copy] Proteins, Vol. 53, No. 1. (1 October 2003), pp. 18-32. by A. Dobrodumov, A. M. Gronenborn posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:57:44 as
	Identification of the protein kinase A regulatory RIalpha-catalytic subunit interface by amide H/2H exchange and protein docking. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13264-13269. by G. S. Anand, D. Law, J. G. Mandell, et al.A. N. Snead, I. Tsigelny, S. S. Taylor, L. F. Ten Eyck, E. A. Komives posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:55:03 as
	Ten thousand interactions for the molecular biologist [My Copy] Nature Biotechnology, Vol. 22, No. 10. (06 October 2004), pp. 1317-1321. by Patrick Aloy, Robert B. Russell posted to chapter homology ppi by ruvido on 2008-04-09 17:31:01 as along with 14 people and 2 groups krapnik ucbcjbm flbarroso mikaellund baaden jwm bicko chad_davis dullhunk dgront drastic Evangelia higueruelo timg Radiation_Damage Stressosome
	High-resolution protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 183-193. by Jeffrey J. Gray posted to chapter docking ppi by ruvido on 2008-04-09 16:00:27 as along with 7 people flbarroso aqeel jwm ima bluvsh1 cjeans higueruelo
	A model of large-scale proteome evolution [My Copy] Advances in Complex Systems, Vol. 5, No. 1. (2002), pp. 43-54. by R. V. Sole, Pastor R. Satorras, E. Smith, T. B. Kepler posted to chapter ppi by ruvido on 2008-04-08 16:25:27 as
	Preferential attachment in the protein network evolution. [My Copy] Phys Rev Lett, Vol. 91, No. 13. (26 September 2003) by E. Eisenberg, E. Y. Levanon posted to chapter ppi by ruvido on 2008-04-08 16:22:53 as along with 3 people dragonrez gurkanbebek cjeans
	Modeling of Protein Interaction Networks [My Copy] ComPlexUs, Vol. 1 (2003), pp. 38-44. by A. Vázquez, A. Flammini, A. Maritan, A. Vespignani posted to chapter ppi by ruvido on 2008-04-08 16:21:31 as
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (03 May 2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabasi, Z. N. Oltvai posted to chapter ppi by ruvido on 2008-04-08 15:52:41 as along with 24 people and 2 groups pablocarb feshbach mgomes lawraga deanmalmgren jmenche muraken davidecellai diamantis dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre gcalda grahamc lpfernandes Evangelia iris_2001 cerca ethkim EBI-regulation GeschwindLab
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted to chapter ppi by ruvido on 2008-04-07 17:29:32 as along with 19 people and 2 groups MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg gcalda lpfernandes shikin hplatero csanford carlk kdl Bioinformatics
	A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted to chapter ppi by ruvido on 2008-04-07 17:28:41 as along with 19 people and 1 group mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre gcalda grahamc laughcry hplatero csanford carlk kdl
	Potential artefacts in protein-interaction networks. [My Copy] FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254. by P. Aloy, R. B. Russell posted to chapter ppi by ruvido on 2008-04-07 17:23:28 as along with 3 people chad_davis wnpx gurkanbebek
	Protein interactions: two methods for assessment of the reliability of high throughput observations. [My Copy] Molecular & cellular proteomics : MCP, Vol. 1, No. 5. (May 2002), pp. 349-356. by Charlotte M. Deane, Łukasz Salwiński, Ioannis Xenarios, David Eisenberg posted to chapter ppi by ruvido on 2008-04-07 17:21:57 as along with 16 people and 1 group chica anf lawraga jimineep lptolik zdai tmmurali lfriedl bluto henschel iris_2001 shikin cdeane Pao-Yang ras chasmand kdl
	Solvation energy in protein folding and binding. [My Copy] Nature, Vol. 319, No. 6050. (2 1986), pp. 199-203. by D. Eisenberg, A. D. McLachlan posted to chapter ppi solvation by ruvido on 2008-04-07 16:42:52 as along with 5 people flbarroso Thermaneutist oceanwind mijam ashaytan
	Prediction of protein?protein interactions by docking methods [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 28-35. by G. Smith posted to chapter docking ppi by ruvido on 2008-04-07 09:58:31 as along with 2 people flbarroso cjeans
	Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 242-249. by S. J. Wodak, R. Méndez posted to capri chapter ppi by ruvido on 2008-04-07 09:56:44 as along with 3 people and 1 group csrocha nachtalp ffranca structural_bioinformatics
	Docking and scoring protein complexes: CAPRI 3rd Edition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Marc F. Lensink, Raúl Méndez, Shoshana J. Wodak posted to capri chapter ppi by ruvido on 2008-04-07 09:54:54 as along with 9 people and 1 group mgomes flbarroso csrocha bicko cjeans carlescorbi yalexeev middledomain timg structural_bioinformatics
	HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information [My Copy] Journal of the American Chemical Society, Vol. 125, No. 7. (1 February 2003), pp. 1731-1737. by Cyril Dominguez, Rolf Boelens, Alexandre M. J. J. Bonvin posted to chapter ppi by ruvido on 2008-04-07 09:48:17 as along with 10 people bmduggan chad_davis laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria yalexeev
	Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. [My Copy] Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154. by L. Lu, A. K. Arakaki, H. Lu, J. Skolnick posted to chapter ppi by ruvido on 2008-04-04 17:05:33 as along with 5 people and 1 group bicko mdimmic lfriedl chad_davis cjeans kdl
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted to chapter ppi by ruvido on 2008-04-04 17:05:03 as along with 6 people and 5 groups ana bicko chad_davis marcius sangeetha kgutwin structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF
	The relationship between sequence and interaction divergence in proteins. [My Copy] Journal of molecular biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by P. Aloy, H. Ceulemans, A. Stark, R. B. Russell posted to chapter ppi by ruvido on 2008-04-04 17:01:20 as along with 7 people chica bpcusack karbak bicko chad_davis drastic RebeccaHamer
	InterPreTS: protein interaction prediction through tertiary structure. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162. by P. Aloy, R. B. Russell posted to chapter ppi by ruvido on 2008-04-04 16:58:26 as along with 6 people kgutwin baaden bicko chad_davis henschel Pao-Yang
	Computational redesign of protein-protein interaction specificity [My Copy] Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379. by Tanja Kortemme, Lukasz A. Joachimiak, Alex N. Bullock, Aaron D. Schuler, Barry L. Stoddard, David Baker posted to chapter ppi by ruvido on 2008-04-04 16:48:51 as along with 7 people bmduggan lna jwm bicko cjeans tale jteyra
	Comparative protein structure modeling of genes and genomes. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 29 (2000), pp. 291-325. by M. A. Marti-Renom, A. C. Stuart, A. Fiser, R. Sanchez, F. Melo, A. Sali posted to chapter ppi by ruvido on 2008-04-04 16:47:47 as along with 15 people and 2 groups tjimenez jperkins fautore aalibes nigham chad_davis ttjoseph marcius ffranca duartemolha dgront insectopalo min013 IrinaMoreira granujilla BioinfoCIPF SGU-CIPF
	Computational methods for the prediction of protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 368-373. by A. Valencia posted to chapter computational ppi review by ruvido on 2008-03-27 11:18:53 as along with 4 people flbarroso mcbla IbnBio selrac
	A structural perspective on protein-protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324. by R. B. Russell, F. Alber, P. Aloy, et al.F. P. Davis, D. Korkin, M. Pichaud, M. Topf, A. Sali posted to chapter ppi review by ruvido on 2008-03-26 17:25:09 as along with 13 people and 1 group baaden bicko anita chad_davis dgront sriram_s cjeans Evangelia Pao-Yang marti higueruelo jteyra timg structure-bii
	Protein interaction maps for complete genomes based on gene fusion events [My Copy] Nature, Vol. 402, No. 6757. (04 November 1999), pp. 86-90. by Anton J. Enright, Ioannis Iliopoulos, Nikos C. Kyrpides, Christos A. Ouzounis posted to chapter gene_fusion ppi by ruvido on 2008-03-26 16:08:46 as along with 6 people jperkins swp09 balajis selrac carlk iris_2001
	The third dimension for protein interactions and complexes [My Copy] Trends in Biochemical Sciences, Vol. 27, No. 12. (1 December 2002), pp. 633-638. by Patrick Aloy, Robert B. Russell posted to chapter ppi by ruvido on 2008-03-26 16:00:31 as along with 1 person cerca
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted to chapter ppi by ruvido on 2008-03-26 15:59:04 as along with 25 people and 6 groups aceol nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy raiyar grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
	Structure-based assembly of protein complexes in yeast. [My Copy] Science, Vol. 303, No. 5666. (26 March 2004), pp. 2026-2029. by P. Aloy, B. Boettcher, H. Ceulemans, et al.C. Leutwein, C. Mellwig, S. Fischer, A. C. Gavin, P. Bork, G. Superti-Furga, L. Serrano, R. B. Russell posted to chapter ppi by ruvido on 2008-03-20 11:42:58 as along with 5 people semin chad_davis koller Evangelia mingzhi
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong J. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. M. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted to chapter ppi by ruvido on 2008-03-20 10:26:08 as along with 29 people and 2 groups colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
	Predicting protein-protein interactions based only on sequences information [My Copy] PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4337-4341. by Juwen Shen, Jian Zhang, Xiaomin Luo, et al.Weiliang Zhu, Kunqian Yu, Kaixian Chen, Yixue Li, Hualiang Jiang posted to chapter ppi by ruvido on 2008-03-20 10:09:38 as along with 6 people and 1 group winterschlaefer samjlord Dualsystems cjeans huyun110 phoenixzxl moernerlab
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to chapter ppi by ruvido on 2008-03-20 10:05:09 as along with 22 people and 2 groups cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
	Prediction of physical protein–protein interactions [My Copy] Physical Biology, Vol. 2, No. 2. (June 2005), S1. by András Szilágyi, Vera Grimm, Adrián K. Arakaki, Jeffrey Skolnick posted to chapter ppi prediction by ruvido on 2008-03-19 10:25:46 as along with 2 people and 2 groups csrocha lfriedl structural_bioinformatics kdl
	A combined algorithm for genome-wide prediction of protein function. [My Copy] Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86. by E. M. Marcotte, M. Pellegrini, M. J. Thompson, T. O. Yeates, D. Eisenberg posted to chapter ppi by ruvido on 2008-03-19 10:06:18 as along with 7 people and 1 group jperkins dragonrez Robinder shivaram lfriedl cjeans carlk kdl
	Detecting Protein Function and Protein-Protein Interactions from Genome Sequences [My Copy] Science, Vol. 285, No. 5428. (30 July 1999), pp. 751-753. by Edward M. Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W. Rice, Todd O. Yeates, David Eisenberg posted to chapter ppi by ruvido on 2008-03-19 10:05:52 as along with 10 people and 1 group bicko yonatanf Robinder lfriedl balajis opheliav gurkanbebek cjeans Evangelia iris_2001 kdl
	From The Cover: A simple physical model for scaling in protein-protein interaction networks [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 311-316. by Eric J. Deeds, Orr Ashenberg, Eugene I. Shakhnovich posted to chapter ppi by ruvido on 2008-03-18 16:07:20 as along with 5 people and 1 group phoenixzxl shuns lfriedl gcalda iris_2001 kdl
	Interaction networks for systems biology. [My Copy] FEBS Lett (15 February 2008) by Samuel Bader, Sebastian Kühner, Anne-Claude C. Gavin posted to ppi by ruvido on 2008-02-25 16:58:12 as along with 4 people yyby chad_davis zwang adacier
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted to chapter network ppi protein-interactions review system-biology by ruvido on 2006-12-29 12:08:39 as along with 24 people and 3 groups flbarroso timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology

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chapter	60
ppi	44
dynamics	34
protein	32
allostery	30
dhfr	25
subdiffusion	24
water	22
energy_landscape	19
enzyme	18
folding	18
kinetics	17
review	17
free-energy	16
cap	15
simulation	15
binding	14
catalysis	13
protein-interactions	12
nmr	11
fractals	10
hierarchy	10
population_shifts	10
genome	9
hemoglobin	8
md	8
network	8
cap_dna	7
conformation	7
experimental	7
gpu	7
random_walk	7
dna	6
ligands	6
models	6
motion	5
mutations	5
transition	5
xray	5
algorithm	4
chemistry	4
clusterization	4
d4	4
docking	4
entropy	4
molecular_dynamics	4
myoglobin	4
shaw	4
tmd	4
acetyl	3
channel	3
dihedrals	3
networks	3
nma	3
normal_modes	3
relaxation_dispersion	3
structure	3
thermodynamics	3
vibrational_modes	3
alaninedipeptide	2
barrier	2
capri	2
complex	2
database	2
denatured	2
flory	2
kinases	2
landscape	2
mwc	2
side-chains	2
spectroscopy	2
state	2
temperature	2
tse	2
x-ray	2
alanine__scanning	1
analysis	1
asimmetry	1
b-factors	1
biology	1
book	1
charmm	1
clustering	1
community	1
comparison	1
computation	1
computational	1
cups	1
cyclophilin	1
ferrys_law	1
flexibility	1
gene_fusion	1
history	1
homology	1
homology_modelling	1
markov	1
master_equation	1
modularity	1
molecular	1
moore	1
other	1
pathways	1
pca	1
physical_chemistry	1
physics	1
pmf	1
prediction	1
profile	1
proteins	1
psichology	1
qmm	1
religion	1
remd	1
rmsd_restraints	1
rna	1
rubik	1
sampling	1
solvation	1
system-biology	1
target	1
wall	1

ruvido's ppi [44 articles] Export

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