ruvido's protein [32 articles] Export

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	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted to protein pca analysis by ruvido on 2009-09-26 17:00:45 as along with 69 people and 3 groups singhsh Jporci tnhh ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm fryanpan kengg rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab Bioinformatics
	Probing Single-Molecule T4 Lysozyme Conformational Dynamics by Intramolecular Fluorescence Energy Transfer [My Copy] The Journal of Physical Chemistry B, Vol. 107, No. 31. (1 August 2003), pp. 7947-7956. by Yu Chen, Dehong Hu, Erich R. Vorpagel, H. Peter Lu posted to dynamics experimental protein subdiffusion by ruvido on 2008-11-25 17:12:31 as along with 1 person quanwang
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:45:36 as along with 12 people and 1 group saravan ahmetbakan xdeupi ubcg08l barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 yalexeev baker-group
	A hierarchy of timescales in protein dynamics is linked to enzyme catalysis [My Copy] Nature (18 November 2007) by Katherine A. Henzler-Wildman, Ming Lei, Vu Thai, Jordan S. Kerns, Martin Karplus, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:44:58 as along with 9 people and 1 group Diego_Prada tmmurali allmensch cactus sobolevnrm jlh64 RamuAnandakrishnan dmobley chenway baker-group
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:43:50 as along with 18 people and 1 group saravan Diego_Prada xdeupi viktor21614 barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	An impossibility theorem for clustering [My Copy] (2002) by J. Kleinberg posted to clusterization protein by ruvido on 2008-10-30 07:39:51 as along with 3 people vtraag sdvillal bigbossman
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to allostery population_shifts protein by ruvido on 2008-10-28 08:07:49 as along with 8 people and 2 groups oteri bmduggan xdeupi okapi aqeel raik barry zwang structural_bioinformatics McCammon
	Protein Dynamical Transition Does Not Require Protein Structure [My Copy] Physical Review Letters, Vol. 101, No. 17. (2008), 178103. by Yunfen He, Pei I. Ku, J. R. Knab, J. Y. Chen, A. G. Markelz posted to dynamics protein by ruvido on 2008-10-24 08:08:36 as
	Structural biology by NMR: structure, dynamics, and interactions. [My Copy] PLoS computational biology, Vol. 4, No. 9. (September 2008) by P. R. Markwick, T. Malliavin, M. Nilges posted to nmr protein by ruvido on 2008-10-15 10:03:21 as along with 8 people and 1 group rph betainverse bmduggan pengchy raik zwang laurabailey barry structural_bioinformatics
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted to nma protein by ruvido on 2008-10-15 10:02:41 as along with 6 people and 5 groups sobolevnrm aqeel apaydin agrossfield skoddet barry baker-group Nielsen group structural_bioinformatics McCammon Bioinformatics
	Normal Modes and Essential Dynamics [My Copy] Molecular Modeling of Proteins, Vol. 443 (2008), pp. 89-106. by Steven Hayward, Bert L. Groot posted to nma protein by ruvido on 2008-10-13 14:43:31 as along with 4 people and 1 group arybakov csrocha LamBras higueruelo structural_bioinformatics
	Charge neutralization and DNA bending by the Escherichia coli catabolite activator protein [My Copy] Nucl. Acids Res., Vol. 30, No. 9. (1 May 2002), pp. 1879-1885. by Philip R. Hardwidge, Jeff M. Zimmerman, Maher posted to cap cap_dna dna protein by ruvido on 2008-09-15 11:00:24 as along with 1 person onufriev
	Catabolite activator protein: DNA binding and transcription activation [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 1. (February 2004), pp. 10-20. by Catherine L. Lawson, David Swigon, Katsuhiko S. Murakami, Seth A. Darst, Helen M. Berman, Richard H. Ebright posted to allostery cap cap_dna protein review by ruvido on 2008-09-15 10:56:08 as
	Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking [My Copy] Journal of Molecular Biology, Vol. 314, No. 1. (16 November 2001), pp. 75-82. by Shengfeng Chen, Angelo Gunasekera, Xiaoping Zhang, Thomas A. Kunkel, Richard H. Ebright, Helen M. Berman posted to allostery cap cap_dna protein by ruvido on 2008-09-15 10:54:44 as
	Structure of the CAP-DNA Complex at 2.5 Å Resolution: A Complete Picture of the Protein-DNA Interface [My Copy] Journal of Molecular Biology, Vol. 260, No. 3. (19 July 1996), pp. 395-408. by Gary Parkinson, Christopher Wilson, Angelo Gunasekera, Yon W. Ebright, Richard E. Ebright, Helen M. Berman posted to allostery cap cap_dna protein by ruvido on 2008-09-15 10:54:00 as
	Allostery and cooperativity revisited [My Copy] Protein Sci, Vol. 17, No. 8. (1 August 2008), pp. 1295-1307. by Qiang Cui, Martin Karplus posted to allostery dynamics protein by ruvido on 2008-09-12 11:20:02 as along with 3 people sdbneuro agrossfield tny
	Probing single-molecule dynamics photon by photon [My Copy] The Journal of Chemical Physics, Vol. 117, No. 24. (2002), pp. 10965-10979. by Haw Yang, Sunney X. Xie posted to experimental models protein subdiffusion by ruvido on 2008-09-09 15:22:22 as along with 1 person fornstar
	Stochastic modeling in nanoscale biophysics: Subdiffusion within proteins [My Copy] (24 Jul 2008) by S. C. Kou posted to dynamics models protein subdiffusion by ruvido on 2008-09-09 09:41:54 as along with 1 person dah
	Dynamic Distance Disorder in Proteins Is Caused by Trapping [My Copy] J. Phys. Chem. B, Vol. 110, No. 19. (18 May 2006), pp. 9363-9367. by G. Luo, I. Andricioaei, X. S. Xie, M. Karplus posted to dynamics protein subdiffusion by ruvido on 2008-09-04 15:01:00 as along with 1 person allmensch
	$My PDF kneller_04_fractional.pdf$ Fractional Brownian dynamics in proteins [My Copy] The Journal of Chemical Physics, Vol. 121, No. 20. (2004), pp. 10278-10283. by G. R. Kneller, K. Hinsen posted to dynamics protein subdiffusion by ruvido on 2008-09-04 14:35:32 as
	Generalized Langevin Equation with Fractional Gaussian Noise: Subdiffusion within a Single Protein Molecule [My Copy] Physical Review Letters, Vol. 93, No. 18. (29 October 2004), 180603. by S. C. Kou, Sunney X. Xie posted to dynamics protein subdiffusion by ruvido on 2008-09-04 14:33:58 as
	Looking into the energy landscape of myoglobin [My Copy] Nat Struct Mol Biol, Vol. 2, No. 10. (October 1995), pp. 848-851. by Thorn D. Leeson, D. A. Wiersma posted to dynamics energy_landscape hierarchy protein by ruvido on 2008-08-25 11:52:41 as along with 1 person alexfuerstenberg
	Complexity in proteins [My Copy] Nat Struct Mol Biol, Vol. 2, No. 10. (October 1995), pp. 821-823. by Hans Frauenfelder posted to dynamics hierarchy protein by ruvido on 2008-08-25 11:50:00 as along with 1 person alexfuerstenberg
	Multi-basin dynamics of a protein in a crystal environment [My Copy] Physica D: Nonlinear Phenomena In 16th Annual International Conference of the Center for Nonlinear Studies, Vol. 107, No. 2-4. (1 September 1997), pp. 225-239. by Angel E. García, Raphael Blumenfeld, Gerhard Hummer, James A. Krumhansl posted to dynamics hierarchy protein subdiffusion by ruvido on 2008-08-25 11:12:58 as along with 1 person scampos
	Hierarchical structure of the energy landscape of proteins revisited by time series analysis. II. Investigation of explicit solvent effects [My Copy] The Journal of Chemical Physics, Vol. 123, No. 14. (2005) by Burak Alakent, Mehmet C. Camurdan, Pemra Doruker posted to dynamics hierarchy protein subdiffusion by ruvido on 2008-08-21 18:16:13 as
	Hierarchical structure of the energy landscape of proteins revisited by time series analysis. I. Mimicking protein dynamics in different time scales [My Copy] The Journal of Chemical Physics, Vol. 123, No. 14. (2005) by Burak Alakent, Mehmet C. Camurdan, Pemra Doruker posted to dynamics hierarchy protein subdiffusion by ruvido on 2008-08-21 18:15:42 as
	Protein dynamics and 1/f noise. [My Copy] Biophys. J., Vol. 63, No. 2. (1 August 1992), pp. 594-598. by T. G. Dewey, J. G. Bann posted to dynamics fractals protein by ruvido on 2008-05-21 16:14:20 as along with 1 person wilbur
	$My PDF dewey_97_fractals.pdf$ Fractals in Molecular Biophysics [My Copy] Oxford University Press In Fractals in Molecular Biophysics (1997) by Thomas G. Dewey posted to dynamics fractals protein by ruvido on 2008-05-21 15:54:47 as
	Probing dynamical disorder kinetics with chemical relaxation techniques [My Copy] Chemical Physics, Vol. 161, No. 3. (15 April 1992), pp. 339-350. by Gregory T. Dewey posted to dynamics fractals protein by ruvido on 2008-05-21 15:51:28 as
	Simulation of conformational transitions by the restricted perturbation-targeted molecular dynamics method. [My Copy] J Chem Phys, Vol. 122, No. 11. (15 March 2005) by A. van der Vaart, M. Karplus posted to dihedrals folding md protein target transition by ruvido on 2006-12-22 11:26:26 as along with 1 person nigham
	Correlated motion and the effect of distal mutations in dihydrofolate reductase. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 12. (10 June 2003), pp. 6980-6985. by T. H. Rod, J. L. Radkiewicz, C. L. Brooks posted to binding catalysis chemistry dhfr enzyme ligands md motion mutations protein simulation by ruvido on 2006-12-21 14:20:49 as
	Folding and binding cascades: dynamic landscapes and population shifts. [My Copy] Protein Sci, Vol. 9, No. 1. (2000), pp. 10-9. by S. Kumar, B. Ma, C. J. Tsai, N. Sinha, R. Nussinov posted to binding conformation folding models molecular protein dhfr by ruvido on 2006-12-19 14:24:51 as

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chapter	60
ppi	44
dynamics	34
protein	32
allostery	30
dhfr	25
subdiffusion	24
water	22
energy_landscape	19
enzyme	18
folding	18
kinetics	17
review	17
free-energy	16
cap	15
simulation	15
binding	14
catalysis	13
protein-interactions	12
nmr	11
fractals	10
hierarchy	10
population_shifts	10
genome	9
hemoglobin	8
md	8
network	8
cap_dna	7
conformation	7
experimental	7
gpu	7
random_walk	7
dna	6
ligands	6
models	6
motion	5
mutations	5
transition	5
xray	5
algorithm	4
chemistry	4
clusterization	4
d4	4
docking	4
entropy	4
molecular_dynamics	4
myoglobin	4
shaw	4
tmd	4
acetyl	3
channel	3
dihedrals	3
networks	3
nma	3
normal_modes	3
relaxation_dispersion	3
structure	3
thermodynamics	3
vibrational_modes	3
alaninedipeptide	2
barrier	2
capri	2
complex	2
database	2
denatured	2
flory	2
kinases	2
landscape	2
mwc	2
side-chains	2
spectroscopy	2
state	2
temperature	2
tse	2
x-ray	2
alanine__scanning	1
analysis	1
asimmetry	1
b-factors	1
biology	1
book	1
charmm	1
clustering	1
community	1
comparison	1
computation	1
computational	1
cups	1
cyclophilin	1
ferrys_law	1
flexibility	1
gene_fusion	1
history	1
homology	1
homology_modelling	1
markov	1
master_equation	1
modularity	1
molecular	1
moore	1
other	1
pathways	1
pca	1
physical_chemistry	1
physics	1
pmf	1
prediction	1
profile	1
proteins	1
psichology	1
qmm	1
religion	1
remd	1
rmsd_restraints	1
rna	1
rubik	1
sampling	1
solvation	1
system-biology	1
target	1
wall	1

ruvido's protein [32 articles] Export

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