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animals	606
vertebrates	463
mammals	447
phylogeny	434
primates	422
methods	236
evolution	235
dna	125
source-trees	125
genetics	118
algorithms	117
mitochondrial	105
comparative	103
likelihood	93
rates	91
data-mining	91
substitution-models	90
speciation	89
divergence	85
invertebrates	85
morphology	82
behaviour	80
phyloinformatics	80
classification	80
biodiversity	77
software	77
diversification	76
sequence-evolution	74
humans	73
clock-like	68
insects	68
programming	66
reconstruction	64
encephalization	62
ecology	58
hominidae	58
genome	57
sequence	57
taxonomy	57
fossils	55
selection	55
models	54
bayesian	52
parsimony	51
adaptation	51
parasitism	49
topology	49
biogeography	49
databases	49
nuclear	49
dbhack1	48
protein	46
supertree	45
characters	42
sociality	40
phylogenomics	37
plants	36
sexual	36
amino-acid	33
inference	32
xml	32
markov-chains	32
monte-carlo	31
morphometrics	31
anthropology	31
extinction	29
bacteria	29
population-genetics	29
life-history	28
mrp	28
nexml	27
alignment	27
ratio-test	25
contrasts	25
karyotyping	20
population	20
ontology	20
lemuridae	20
radiation	20
simulation	19
rodents	18
strepsirrhines	18
conservation	17
statistics	16
birds	16
specialization	14
viruses	13
hybridization	13
predation	12
polymorphism	12
fungi	12
colobinae	12
homology	12
weighting	12
rna	12
networks	12
vision	11
carnivora	11
cebidae	10
graph	10
restriction	10
phenetics	9
platyrrhines	9
fishes	9
recombination	9
estimation	8
polymerase-chain-reaction	8
chiroptera	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
cercopithecidae	6
regions	6
lizards	6
metabolomics	5
alcids	5
variability	5
cercopithecinae	5
cells	4
cheirogaleidae	4
rats	4
graphics	4
catarrhines	4
sine	3
haplorhini	3
cetartiodactyla	2
hylobates	2
tarsiidae	2
dogs	1
nucleic	1
philosophy	1
line	1
shrews	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1