rvosa's alignment [27 articles] Export Sort

Recent papers added to rvosa's library classified by the tag alignment. You can also see everyone's alignment.

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	Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection [My Copy] Mol Biol Evol, Vol. 22, No. 5. (1 May 2005), pp. 1208-1222. by Sergei L. Kosakovsky Pond, Simon D. W. Frost posted to substitution-models selection reconstruction rates models methods likelihood estimation bayesian alignment by rvosa on 2009-12-02 16:32:19 as along with 6 people and 1 group druvus operon BioNica Garamonfok marck gjuggler FAB-lab
	HyPhy: hypothesis testing using phylogenies [My Copy] Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 676-679. by Sergei L. Pond, Simon D. W. Frost, Spencer V. Muse posted to substitution-models statistics software reconstruction ratio-test programming phyloinformatics models methods likelihood inference estimation data-mining alignment algorithms by rvosa on 2009-12-02 16:28:42 as along with 6 people and 1 group BioNica druvus operon radek Natasha Garamonfok FAB-lab
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dbhack1 dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein sequence by rvosa on 2008-12-18 02:07:33 as along with 1 person and 1 group mcox FAB-lab
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dbhack1 dna evolution homology methods phylogeny protein sequence by rvosa on 2008-12-18 02:00:54 as along with 1 person and 1 group Schmidtc FAB-lab
	Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751. by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteomics rates ratio-test selection sequence-evolution by rvosa on 2008-08-12 08:00:47 as along with 1 person and 1 group kndiaye FAB-lab
	An evaluation of the molecular clock hypothesis using mammalian DNA sequences [My Copy] Journal of Molecular Evolution, Vol. 25, No. 4. (1987), pp. 330-342. by Wen-Hsiung Li, Masako Tanimura, Paul Sharp posted to alignment animals dna evolution genetics primates rodents sequence-evolution substitution-models by rvosa on 2008-08-09 05:56:40 as along with 1 group FAB-lab
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted to algorithms alignment databases data-mining genome likelihood methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:27:51 as along with 7 people and 3 groups cgaugain operon ana indigoviolet dquest ninch cerca structural_bioinformatics Bioinformatics EisenLab
	Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2596-2603. by Jean-Francois Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, Francois Rechenmann, Guy Perriere posted to algorithms alignment databases data-mining genome methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:21:45 as along with 2 people and 2 groups ana stajich structural_bioinformatics Bioinformatics
	Improving the specificity of high-throughput ortholog prediction. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (28 May 2006) by Debra L. Fulton, Yvonne Y. Li, Matthew R. Laird, Benjamin G. Horsman, Fiona M. Roche, Fiona S. Brinkman posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:17:36 as along with 4 people and 2 groups operon indigoviolet kaspermunch cerca Bioinformatics EisenLab
	BranchClust: a phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa on 2008-08-08 07:02:46 as along with 5 people and 2 groups robfsouza GustavoLacerda cgaugain dandaman stajich FAB-lab Mycology
	18S ribosomal RNA and tetrapod phylogeny [My Copy] Systematic Biology, Vol. 52, No. 3. (2003), pp. 283-295. by X. H. Xia, Z. Xie, K. M. Kjer posted to alignment animals birds fossils mammals morphology vertebrates by rvosa on 2008-02-07 00:05:52 as
	Iterative pass optimization of sequence data [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 254-260. by W. C. Wheeler posted to algorithms alignment methods phylogeny sequence by rvosa on 2008-02-07 00:05:51 as
	Search-based optimization [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 4. (2003), pp. 348-355. by W. C. Wheeler posted to alignment methods parsimony by rvosa on 2008-02-07 00:05:51 as
	Inching toward Reality: An Improved Likelihood Model of Sequence Evolution [My Copy] Journal of Molecular Evolution, Vol. 34 (1992), pp. 3-16. by Jeffrey L. Thorne, Hirohisa Kishino, Joseph Felsenstein posted to algorithms alignment evolution likelihood methods programming substitution-models by rvosa on 2008-02-07 00:05:50 as
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice [My Copy] Nucleic Acids Research, Vol. 22 (1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment software by rvosa on 2008-02-07 00:05:50 as
	Bio::CDAT - An Object for Evolutionary Analysis of Data [My Copy] (2006) by A. Stoltzfus, R. A. Vos, J. Reese, W. Qiu posted to alignment dbhack1 evolution inference phyloinformatics programming software by rvosa on 2008-02-07 00:05:48 as
	Multiple Sequence Alignment in Phylogenetic Analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (2000), pp. 317-330. by Aloysius Phillips, Daniel Janies, Ward C. Wheeler posted to alignment phylogeny by rvosa on 2008-02-07 00:05:42 as
	The problem with the Paleoptera Problem: sense and sensitivity [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 5. (2003), pp. 432-442. by T. H. Ogden, M. F. Whiting posted to alignment animals classification diversification dna insects invertebrates methods morphology phylogeny by rvosa on 2008-02-07 00:05:40 as
	Mesquite: a modular system for evolutionary analysis. [My Copy] (2001) by Wayne P. Maddison, D. R. Maddison posted to alignment comparative data-mining dbhack1 evolution nexml phylogeny phyloinformatics programming software by rvosa on 2008-02-07 00:05:36 as
	Basic local alignment search tool [My Copy] Journal of Molecular Biology, Vol. 215 (1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment software by rvosa on 2008-02-07 00:05:06 as
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to algorithms alignment methods sequence by rvosa on 2008-02-01 11:26:13 as along with 12 people and 2 groups operon druvus treangen mdimmic timflutre stajich zwang cabbagezs groepl yoanjacquemin marti smbe2008 Bioinformatics FAB-lab
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to algorithms alignment data-mining databases dbhack1 methods programming software by rvosa on 2008-02-01 11:05:23 as along with 27 people and 2 groups akou ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to algorithms alignment amino-acid data-mining dna methods phylogeny phyloinformatics sequence by rvosa on 2008-02-01 11:01:06 as along with 9 people and 1 group treangen druvus aprasad BioNica stajich cjeans zwang lilou mailund FAB-lab
	Sequences and evolution of mammalian RH gene transcripts and proteins [My Copy] Immunogenetics, Vol. 49, No. 1. (Jan 1999), pp. 15-25. by P. Apoil, A. Blancher posted to alignment amino-acid animals carnivora cattle dna dogs evolution homology humans invertebrates mammals mice phylogeny primates rats rodents source-trees vertebrates weighting by rvosa on 2008-01-30 08:07:19 as
	Primate molecular divergence dates [My Copy] Mol Phylogenet Evol, Vol. 41, No. 2. (Nov 2006), pp. 384-94. by Michael E. Steiper, Nathan M. Young posted to alignment animals bayesian divergence evolution fossils humans mammals models phylogeny primates rates sequence by rvosa on 2008-01-30 08:07:12 as
	Evolution. Is the "Big Bang" in animal evolution real? [My Copy] Science, Vol. 310, No. 5756. (Dec 2005), pp. 1910-1. by Lars S. Jermiin, Leon Poladian, Michael A. Charleston posted to alignment amino-acid animals evolution fossils models phylogeny sequence by rvosa on 2008-01-30 08:07:08 as
	Rapid cladogenesis in marine fishes revisited [My Copy] Evolution, Vol. 59, No. 5. (May 2005), pp. 1119-27. by Lukas Rüber, Rafael Zardoya posted to alignment animals databases dna evolution fishes likelihood methods models monte-carlo phylogeny rna sequence speciation vertebrates protein by rvosa on 2008-01-30 08:07:06 as

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animals	606
vertebrates	463
mammals	447
phylogeny	434
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methods	236
evolution	235
dna	125
source-trees	125
genetics	118
algorithms	117
mitochondrial	105
comparative	103
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insects	68
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ecology	58
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markov-chains	32
monte-carlo	31
morphometrics	31
anthropology	31
extinction	29
bacteria	29
population-genetics	29
life-history	28
mrp	28
nexml	27
alignment	27
ratio-test	25
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polymerase-chain-reaction	8
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proteomics	7
mice	7
lexicostatistics	7
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cercopithecidae	6
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lizards	6
metabolomics	5
alcids	5
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cercopithecinae	5
cells	4
cheirogaleidae	4
rats	4
graphics	4
catarrhines	4
sine	3
haplorhini	3
cetartiodactyla	2
hylobates	2
tarsiidae	2
dogs	1
nucleic	1
philosophy	1
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rvosa's alignment [27 articles] Export Sort

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