rvosa's databases [47 articles] Export

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	Phylogenomics of primates and their ancestral populations [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 1929-1941. by Adam Siepel posted to variability speciation sequence selection recombination primates phylogenomics genome evolution divergence databases data-mining by rvosa on 2009-11-25 17:32:53 as along with 3 people and 1 group djkt aprasad merpublic FAB-lab
	Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 313. by Benjamin Good, Joseph Tennis, Mark Wilkinson posted to ontology databases data-mining by rvosa on 2009-09-26 10:36:06 as along with 29 people and 8 groups cgl davidmam IgorP jalonsoarevalo perkeo applebyb artaban421 alhoori dswan heliopais metatheory kevinemamy sstose jago bbrunelle lyss klauso daforerog meikipp nuin thegoose mikel_egana allysonlister Gaetan dullhunk fgibson druvus egonw cisevol Zotero en español UNFCCC STS Integrative Expertise for Global Health CBD Convention on Biological Diversity Journal picks FAB-lab BergmanLab
	A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data [My Copy] Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3080-3087. by Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit posted to xml software programming phyloinformatics ontology nexml dbhack1 databases data-mining by rvosa on 2009-09-07 13:51:13 as along with 11 people and 1 group allysonlister neilswainston fgibson cmzmasek thegoose2 druvus guhjy epigenetics Simplicity tharris dansullivanblk FAB-lab
	Biological knowledge management: the emerging role of the Semantic Web technologies. [My Copy] Briefings in Bioinformatics, Vol. 10, No. 4. (19 May 2009), pp. 392-407. by E. Antezana, M. Kuiper, V. Mironov posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2009-07-30 21:14:33 as along with 1 group FAB-lab
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to data-mining databases dbhack1 methods nexml ontology phyloinformatics programming software xml by rvosa on 2009-07-30 21:06:03 as along with 10 people and 2 groups jfr Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson FAB-lab NaCTeM
	Advancing translational research with the Semantic Web [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007), S2. by Alan Ruttenberg, Tim Clark, William Bug, et al.Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H. Cheung posted to data-mining databases dbhack1 methods nexml ontology programming software xml by rvosa on 2009-07-30 21:04:48 as along with 26 people and 4 groups beanformer artaban421 nicklynch vkwn eesruiz Effie simonmcbride druvus gmcmahon fgibson nuin daforerog guhjy Cortel wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan dansullivanblk FAB-lab ImagCom - Biomedical Text Computing NaCTeM Evidence-based-medicine
	The ontology of biological taxa [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i313-321. by Stefan Schulz, Holger Stenzhorn, Martin Boeker posted to classification data-mining databases dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2009-07-25 01:53:20 as along with 4 people and 2 groups martingerner orovellotti guhjy dullhunk FAB-lab Eco informatics
	PhyloExplorer: a web server to validate, explore and query phylogenetic trees [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (18 May 2009), 108. by Vincent Ranwez, Nicolas Clairon, Frederic Delsuc, et al.Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry posted to algorithms biodiversity classification data-mining databases graph graphics methods phyloinformatics programming software taxonomy by rvosa on 2009-06-27 09:11:43 as along with 1 person and 1 group djkt FAB-lab
	Evolutionary Data Leaping to Web 3.0: Some Highlights From NESCent's Third Hackathon [My Copy] In ASN/SSB/SSE meeting (2009) by Hilmar Lapp, Arlin Stoltzfus, Todd J. Vision, Rutger A. Vos posted to algorithms data-mining databases dbhack1 evolution nexml ontology programming software xml by rvosa on 2009-06-17 10:20:28 as along with 1 group FAB-lab
	Principles for a names-based cyberinfrastructure to serve all of biology [My Copy] Zootaxa, No. 1950. (2008), pp. 153-163. by David J. Patterson, Sarah Faulwetter, Alexey Shipunov posted to algorithms biodiversity classification data-mining databases phyloinformatics programming software taxonomy by rvosa on 2009-06-09 23:07:39 as along with 1 group FAB-lab
	TreeBASE v. 2: A Database of Phylogenetic Knowledge [My Copy] In e-BioSphere 2009 (2009) by William H. Piel, Lucie Chan, Mark J. Dominus, Jin Ruan, Rutger A. Vos, Val Tannen posted to databases nexml software by rvosa on 2009-05-30 04:07:35 as along with 1 group FAB-lab
	From XML to RDF: how semantic web technologies will change the design of 'omic' standards [My Copy] Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103. by Xiaoshu Wang, Robert Gorlitsky, Jonas S. Almeida posted to data-mining databases ontology programming software xml by rvosa on 2009-04-21 02:43:30 as along with 15 people and 3 groups egonw eesruiz druvus badger_master irenas andytseng moborg wnpx dullhunk hpiwowar ianturton mza jmuhlich ibuch dansullivanblk ImagCom - Biomedical Text Computing dbk-lab SorgerLab
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dbhack1 dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein sequence by rvosa on 2008-12-18 02:07:33 as along with 1 person and 1 group mcox FAB-lab
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dbhack1 dna evolution homology methods phylogeny protein sequence by rvosa on 2008-12-18 02:00:54 as along with 1 person and 1 group Schmidtc FAB-lab
	The Tree of Life Web Project [My Copy] Zootaxa, No. 1668. (2007), pp. 19-40. by David R. Maddison, Katja-Sabine Schulz, Wayne P. Maddison posted to biodiversity data-mining databases dbhack1 evolution phylogeny phyloinformatics taxonomy by rvosa on 2008-08-13 01:07:30 as along with 1 group FAB-lab
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to data-mining databases dbhack1 genetics genome ontology protein proteomics by rvosa on 2008-08-11 08:24:25 as along with 76 people and 8 groups suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys fongenae 8_01 BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	The Ensembl genome database project. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 38-41. by T. Hubbard, D. Barker, E. Birney, et al.G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, M. Clamp posted to data-mining databases dbhack1 genome programming software by rvosa on 2008-08-11 07:15:41 as along with 7 people and 1 group timhubbard niallhaslam brdwilde incovoma kynn raylim CitoJam FAB-lab
	Fast Genes and Slow Clades: Comparative Rates of Molecular Evolution in Mammals [My Copy] Evolutionary Bioinformatics, Vol. 3 (2007), pp. 59-85. by Olaf R. P. Bininda-Emonds posted to animals clock-like data-mining databases mammals rates sequence-evolution substitution-models supertree by rvosa on 2008-08-08 08:22:08 as
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted to algorithms alignment databases data-mining genome likelihood methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:27:51 as along with 7 people and 3 groups cgaugain operon ana indigoviolet dquest ninch cerca structural_bioinformatics Bioinformatics EisenLab
	Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2596-2603. by Jean-Francois Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, Francois Rechenmann, Guy Perriere posted to algorithms alignment databases data-mining genome methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:21:45 as along with 2 people and 2 groups ana stajich structural_bioinformatics Bioinformatics
	Integrating biological databases [My Copy] Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:04 as along with 10 people ptrobajo neils neilernst eweaver vaija laszlo8 hpiwowar fisherp lei cjeans
	Creating a bioinformatics nation. [My Copy] Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120. by Lincoln Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:01 as along with 13 people and 1 group pekrau druvus irenas andytseng balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes fgibson dbk-lab
	XML: a lingua franca for science? [My Copy] Trends in Biotechnology, Vol. 18, No. 8. (1 August 2000), pp. 331-333. by Emmanuel Barillot, Frederic Achard posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 01:23:44 as along with 1 person cjeans
	Representation and Retrieval Method for Molecular Phylogenetic Tree Data Based on XML [My Copy] IPSJ SIG Notes, Vol. 99, No. 61. (1999), pp. 31-36. by Masuyama Tomohisa, Kishinami Risa, Yoshikawa Takanobu, Matsuda Hideo, Hashimoto Akihiro posted to data-mining databases dbhack1 nexml programming software xml by rvosa on 2008-05-13 00:49:40 as
	The growth of phylogenetic information and the need for a phylogenetic database [My Copy] Systematic Biology, Vol. 42 (1993), pp. 562-568. by Michael J. Sanderson, B. Baldwin, G. Bharathan, et al.C. Campbell, D. Ferguson, J. M. Porter, C. V. Dohlen, M. F. Wojciechowski, M. J. Donoghue posted to data-mining databases dbhack1 phylogeny phyloinformatics by rvosa on 2008-02-07 00:05:46 as
	Phylogenetic data base schema [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 159-159. by K. C. Nixon posted to data-mining databases dbhack1 phylogeny phyloinformatics programming by rvosa on 2008-02-07 00:05:39 as
	The Tree of Life Web Project [My Copy] (2004) by D. R. Maddison, K. S. Schulz posted to biodiversity databases dbhack1 programming software by rvosa on 2008-02-07 00:05:35 as
	A relational model of data for large shared data banks [My Copy] Communications of the ACM, Vol. 13, No. 6. (1970), pp. 377-387. by E. F. Codd posted to databases programming by rvosa on 2008-02-07 00:05:13 as
	Organization and Maintenance of Large Ordered Indexes [My Copy] Acta Informatica, Vol. 1 (1972), pp. 173-189. by Rudolf Bayer, E. M. Mccreight posted to databases programming by rvosa on 2008-02-07 00:05:08 as
	Overcoming The Object-Relational Impedance Mismatch [My Copy] In Agile database techniques (2003) by Scott Ambler posted to databases programming software by rvosa on 2008-02-07 00:05:06 as
	Detecting and overcoming systematic errors in genome-scale phylogenies. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399. by N. Rodríguez-Ezpeleta, H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, H. Philippe posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa on 2008-02-01 11:12:38 as along with 3 people and 2 groups aprasad stajich dandaman FAB-lab Mycology
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to algorithms alignment data-mining databases dbhack1 methods programming software by rvosa on 2008-02-01 11:05:23 as along with 26 people and 2 groups ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PLoS ONE, Vol. 2 (2007) by F. Chen, A. J. Mackey, J. K. Vermunt, D. S. Roos posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa on 2008-02-01 10:57:02 as along with 14 people and 3 groups richardbickerton treangen dquest cgaugain druvus icases operon indigoviolet stajich cjeans winterschlaefer bpcusack cerca natstreet EisenLab FAB-lab TNT
	The adaptive evolution database (TAED) [My Copy] Genome Biol, Vol. 2, No. 8. (Jan 2001), pp. 1-6. by D. Liberles, D. Schreiber, S. Govindarajan posted to adaptation databases data-mining evolution by rvosa on 2008-01-30 08:07:23 as
	Changing the landscape: a new strategy for estimating large phylogenies [My Copy] Syst Biol, Vol. 50, No. 1. (2001), pp. 60-66. by D. L. Quicke, J. Taylor, A. Purvis posted to animals databases genetics insects methods phylogeny software by rvosa on 2008-01-30 08:07:20 as
	Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence [My Copy] Molecular Phylogenetics and Evolution, Vol. 9, No. 3. (1998), pp. 585-598. by M. Goodman, C. A. Porter, J. Czelusniak, et al.S. L. Page, H. Schneider, J. Shoshani, G. Gunnell, C. P. Groves posted to animals classification databases divergence dna evolution fossils genetics humans mammals models phylogeny primates source-trees vertebrates by rvosa on 2008-01-30 08:07:20 as
	Beyond NEXUS: Universal cladistic data objects [My Copy] Cladistics (2001) by K. Nixon, J. Carpenter, S. Borgardt posted to data-mining databases dbhack1 nexml phyloinformatics software by rvosa on 2008-01-30 08:07:20 as
	A tree island approach to inferring phylogeny in the ant subfamily Formicinae, with especial reference to the evolution of weaving [My Copy] Mol Phylogenet Evol, Vol. 29, No. 2. (Nov 2003), pp. 317-30. by Rebecca N. Johnson, Paul M. Agapow, Ross H. Crozier posted to algorithms animals databases dna evolution insects likelihood methods mitochondrial phylogeny polymerase-chain-reaction by rvosa on 2008-01-30 08:07:19 as
	Phyloinformatics: Toward a Phylogenetic Database [My Copy] Springer In Data Mining in Bioinformatics (2005), pp. 219-241. by R. Page edited by Xindong Wu, Lakhmi Jain, Jason T. L. Wang, Mohammed J. Zaki, Hannu T. T. Toivonen, Dennis Shasha posted to databases dbhack1 phylogeny phyloinformatics by rvosa on 2008-01-30 08:07:14 as
	SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates [My Copy] Genetics, Vol. 157, No. 2. (2001), pp. 777-784. by J. Schmitz, M. Ohme, H. Zischler posted to animals databases dna genetics haplorhini homology humans phylogeny polymerase-chain-reaction polymorphism primates sequence sine software source-trees tarsiidae vertebrates by rvosa on 2008-01-30 08:07:14 as
	Towards a taxonomically intelligent phylogenetic database [My Copy] precedings.nature.com (Jan 2005) by R. Page posted to databases phylogeny taxonomy by rvosa on 2008-01-30 08:07:13 as
	apTreeshape: statistical analysis of phylogenetic tree shape [My Copy] Bioinformatics, Vol. 22, No. 3. (Feb 2006), pp. 363-4. by Nicolas Bortolussi, Eric Durand, Michael Blum, Olivier F. Cois posted to algorithms databases evolution genetics models phylogeny population programming simulation software topology by rvosa on 2008-01-30 08:07:12 as
	Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood [My Copy] Bioinformatics, Vol. 21, No. 24. (Dec 2005), pp. 4338-47. by Wim Hordijk, Olivier Gascuel posted to algorithms databases genetics likelihood methods phylogeny software substitution-models by rvosa on 2008-01-30 08:07:08 as
	A comparison among different synchronized tree traversal algorthims for spatial joins [My Copy] geoinfo.info by S. Gatti, G. Magalh posted to algorithms databases methods programming software topology by rvosa on 2008-01-30 08:07:07 as
	Rapid cladogenesis in marine fishes revisited [My Copy] Evolution, Vol. 59, No. 5. (May 2005), pp. 1119-27. by Lukas Rüber, Rafael Zardoya posted to alignment animals databases dna evolution fishes likelihood methods models monte-carlo phylogeny rna sequence speciation vertebrates protein by rvosa on 2008-01-30 08:07:06 as
	Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions [My Copy] Bioinformatics, Vol. 16, No. 11. (Nov 2000), pp. 1003-9. by D. A. Ruths, E. S. Chen, L. Ellis posted to classification databases genome graphics phylogenomics phylogeny software by rvosa on 2008-01-30 08:07:06 as
	Requirements of phylogenetic databases [My Copy] Third IEEE Symposium on BioInformatics and BioEngineering (BIBE'03) (2003), pp. 141-148. by L. Nakhleh, D. Miranker, F. Barbancon posted to databases dbhack1 phylogeny programming software by rvosa on 2008-01-30 08:07:05 as

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animals	606
vertebrates	463
mammals	447
phylogeny	432
primates	420
evolution	233
methods	230
source-trees	125
dna	123
genetics	117
algorithms	114
mitochondrial	104
comparative	102
likelihood	91
rates	90
speciation	89
substitution-models	88
invertebrates	85
data-mining	84
divergence	83
morphology	82
behaviour	80
classification	79
biodiversity	77
phyloinformatics	77
diversification	76
software	74
sequence-evolution	73
humans	72
clock-like	68
insects	68
encephalization	62
reconstruction	62
programming	62
ecology	58
taxonomy	57
sequence	57
hominidae	56
fossils	55
genome	54
models	52
selection	52
adaptation	51
parsimony	51
bayesian	50
topology	49
parasitism	49
nuclear	49
biogeography	49
dbhack1	48
databases	47
supertree	45
protein	44
characters	42
sociality	40
phylogenomics	36
plants	36
sexual	36
xml	32
amino-acid	32
morphometrics	31
inference	31
markov-chains	31
monte-carlo	30
anthropology	30
extinction	29
mrp	28
bacteria	28
life-history	28
nexml	27
population-genetics	27
alignment	25
contrasts	25
ratio-test	24
population	20
radiation	20
karyotyping	20
lemuridae	19
simulation	19
ontology	18
rodents	18
conservation	17
strepsirrhines	17
birds	16
statistics	15
specialization	14
viruses	13
hybridization	13
predation	12
weighting	12
rna	12
homology	11
colobinae	11
fungi	11
vision	11
carnivora	11
networks	11
polymorphism	10
restriction	10
fishes	9
cebidae	9
phenetics	9
graph	9
recombination	9
chiroptera	8
platyrrhines	8
polymerase-chain-reaction	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
estimation	6
regions	6
lizards	6
alcids	5
metabolomics	5
cercopithecidae	5
graphics	4
rats	4
cells	4
cercopithecinae	4
sine	3
variability	3
cheirogaleidae	3
catarrhines	3
cetartiodactyla	2
haplorhini	2
shrews	1
philosophy	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1
line	1
hylobates	1
tarsiidae	1
nucleic	1
dogs	1

rvosa's databases [47 articles] Export

rvosa's tags