rvosa's dbhack1 [48 articles] Export

Recent papers added to rvosa's library classified by the tag dbhack1. You can also see everyone's dbhack1.

	A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data [My Copy] Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3080-3087. by Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit posted to xml software programming phyloinformatics ontology nexml dbhack1 databases data-mining by rvosa on 2009-09-07 13:51:13 as along with 11 people and 1 group allysonlister neilswainston fgibson cmzmasek thegoose2 druvus guhjy epigenetics Simplicity tharris dansullivanblk FAB-lab
	A Semantic Web for bioinformatics: goals, tools, systems, applications [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 4. (2008), S1. by Nicola Cannata, Michael Schroder, Roberto Marangoni, Paolo Romano posted to xml software programming phyloinformatics ontology nexml dbhack1 by rvosa on 2009-09-07 13:49:14 as along with 7 people and 1 group artaban421 cmzmasek druvus guhjy mariakmejia bootsy dansullivanblk FAB-lab
	Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt [My Copy] The Semantic Web – ISWC 2004 (2004), pp. 350-364. by Phillip Lord, Sean Bechhofer, Mark D. Wilkinson, et al.Gary Schiltz, Damian Gessler, Duncan Hull, Carole Goble, Lincoln Stein posted to xml software programming phyloinformatics ontology nexml dbhack1 data-mining by rvosa on 2009-09-07 13:46:55 as along with 3 people and 1 group mjbell cmzmasek alanrw FAB-lab
	Biological knowledge management: the emerging role of the Semantic Web technologies. [My Copy] Briefings in Bioinformatics, Vol. 10, No. 4. (19 May 2009), pp. 392-407. by E. Antezana, M. Kuiper, V. Mironov posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2009-07-30 21:14:33 as along with 1 group FAB-lab
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to data-mining databases dbhack1 methods nexml ontology phyloinformatics programming software xml by rvosa on 2009-07-30 21:06:03 as along with 10 people and 2 groups jfr Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson FAB-lab NaCTeM
	Advancing translational research with the Semantic Web [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007), S2. by Alan Ruttenberg, Tim Clark, William Bug, et al.Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H. Cheung posted to data-mining databases dbhack1 methods nexml ontology programming software xml by rvosa on 2009-07-30 21:04:48 as along with 26 people and 4 groups beanformer artaban421 nicklynch vkwn eesruiz Effie simonmcbride druvus gmcmahon fgibson nuin daforerog guhjy Cortel wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan dansullivanblk FAB-lab ImagCom - Biomedical Text Computing NaCTeM Evidence-based-medicine
	The ontology of biological taxa [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i313-321. by Stefan Schulz, Holger Stenzhorn, Martin Boeker posted to classification data-mining databases dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2009-07-25 01:53:20 as along with 4 people and 2 groups martingerner orovellotti guhjy dullhunk FAB-lab Eco informatics
	Evolutionary Data Leaping to Web 3.0: Some Highlights From NESCent's Third Hackathon [My Copy] In ASN/SSB/SSE meeting (2009) by Hilmar Lapp, Arlin Stoltzfus, Todd J. Vision, Rutger A. Vos posted to algorithms data-mining databases dbhack1 evolution nexml ontology programming software xml by rvosa on 2009-06-17 10:20:28 as along with 1 group FAB-lab
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dbhack1 dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein sequence by rvosa on 2008-12-18 02:07:33 as along with 1 person and 1 group mcox FAB-lab
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dbhack1 dna evolution homology methods phylogeny protein sequence by rvosa on 2008-12-18 02:00:54 as along with 1 person and 1 group Schmidtc FAB-lab
	The Tree of Life Web Project [My Copy] Zootaxa, No. 1668. (2007), pp. 19-40. by David R. Maddison, Katja-Sabine Schulz, Wayne P. Maddison posted to biodiversity data-mining databases dbhack1 evolution phylogeny phyloinformatics taxonomy by rvosa on 2008-08-13 01:07:30 as along with 1 group FAB-lab
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to data-mining databases dbhack1 genetics genome ontology protein proteomics by rvosa on 2008-08-11 08:24:25 as along with 77 people and 8 groups krapnik suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys fongenae 8_01 BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	The Ensembl genome database project. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 38-41. by T. Hubbard, D. Barker, E. Birney, et al.G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, M. Clamp posted to data-mining databases dbhack1 genome programming software by rvosa on 2008-08-11 07:15:41 as along with 7 people and 1 group timhubbard niallhaslam brdwilde incovoma kynn raylim CitoJam FAB-lab
	Extensible Markup Language (XML) 1.0 (Fourth Edition) [My Copy] (16 August 2006) by T. Bray, J. Paoli, C. M. Sperberg-Mcqueen, E. Maler edited by F. Yergeau posted to dbhack1 nexml xml by rvosa on 2008-05-14 04:59:15 as along with 1 person federicopaoloni
	Integrating biological databases [My Copy] Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:04 as along with 10 people ptrobajo neils neilernst eweaver vaija laszlo8 hpiwowar fisherp lei cjeans
	Creating a bioinformatics nation. [My Copy] Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120. by Lincoln Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:01 as along with 13 people and 1 group pekrau druvus irenas andytseng balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes fgibson dbk-lab
	XML: a lingua franca for science? [My Copy] Trends in Biotechnology, Vol. 18, No. 8. (1 August 2000), pp. 331-333. by Emmanuel Barillot, Frederic Achard posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 01:23:44 as along with 1 person cjeans
	GraphML progress report: Structural layer proposal [My Copy] (2002) by U. Brandes, M. Eiglsperger, I. Herman, M. Himsolt, M. Marshall posted to dbhack1 nexml programming software xml by rvosa on 2008-05-13 01:08:04 as along with 2 people robert85 yiweicao
	Representation and Retrieval Method for Molecular Phylogenetic Tree Data Based on XML [My Copy] IPSJ SIG Notes, Vol. 99, No. 61. (1999), pp. 31-36. by Masuyama Tomohisa, Kishinami Risa, Yoshikawa Takanobu, Matsuda Hideo, Hashimoto Akihiro posted to data-mining databases dbhack1 nexml programming software xml by rvosa on 2008-05-13 00:49:40 as
	XML, bioinformatics and data integration. [My Copy] Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 115-125. by F. Achard, G. Vaysseix, E. Barillot posted to data-mining dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 00:39:04 as along with 7 people and 2 groups irenas ingo andytseng yas dullhunk myui cjeans dbk-lab T_lab
	Proposal for phyloXML level 1, version 0.3 [My Copy] (2005) by Ethalinda K. S. Cannon, Christian M. Zmasek posted to classification dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2008-05-13 00:08:43 as
	Lifting XML Schema to OWL [My Copy] Web Engineering (2004), pp. 354-358. by Matthias Ferdinand, Christian Zirpins, David Trastour posted to dbhack1 ontology programming software xml by rvosa on 2008-02-20 16:22:09 as
	Mapping XML to Existing OWL Ontologies [My Copy] In International Conference WWW/Internet 2006 (2006), pp. 72-77. by Toni Rodrigues, Pedro Rosa, Jorge Cardoso edited by Pedro Isaías, Miguel B. Nunes, Inmaculada J. Martínez posted to dbhack1 ontology programming software xml by rvosa on 2008-02-20 16:15:03 as
	SDD Part 0: Introduction and Primer to the SDD Standard [My Copy] Vol. 2005, No. August, 9. (2003) by Kevin Thiele posted to dbhack1 programming xml by rvosa on 2008-02-07 00:05:50 as
	PAUP*: phylogenetic analysis using parsimony, version 4.0b10 [My Copy] (2003) by D. L. Swofford posted to dbhack1 likelihood parsimony phylogeny phyloinformatics software by rvosa on 2008-02-07 00:05:49 as
	Bio::CDAT - An Object for Evolutionary Analysis of Data [My Copy] (2006) by A. Stoltzfus, R. A. Vos, J. Reese, W. Qiu posted to alignment dbhack1 evolution inference phyloinformatics programming software by rvosa on 2008-02-07 00:05:48 as
	The growth of phylogenetic information and the need for a phylogenetic database [My Copy] Systematic Biology, Vol. 42 (1993), pp. 562-568. by Michael J. Sanderson, B. Baldwin, G. Bharathan, et al.C. Campbell, D. Ferguson, J. M. Porter, C. V. Dohlen, M. F. Wojciechowski, M. J. Donoghue posted to data-mining databases dbhack1 phylogeny phyloinformatics by rvosa on 2008-02-07 00:05:46 as
	XGMML (eXtensible Graph Markup and Modeling Language) 1.0 Draft Specification. [My Copy] Vol. 2005, No. August 9. (2001) by J. Punin, Mukkai Krishnamoorthy posted to dbhack1 graph networks programming xml by rvosa on 2008-02-07 00:05:42 as
	Phylogenetic data base schema [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 159-159. by K. C. Nixon posted to data-mining databases dbhack1 phylogeny phyloinformatics programming by rvosa on 2008-02-07 00:05:39 as
	SOAP Version 1.2, W3C Recommendation, 24 June 2003 [My Copy] Vol. 2005, No. August 9. (2003) by N. Mitra posted to dbhack1 programming xml by rvosa on 2008-02-07 00:05:37 as
	Mesquite: a modular system for evolutionary analysis. [My Copy] (2001) by Wayne P. Maddison, D. R. Maddison posted to alignment comparative data-mining dbhack1 evolution nexml phylogeny phyloinformatics programming software by rvosa on 2008-02-07 00:05:36 as
	The Tree of Life Web Project [My Copy] (2004) by D. R. Maddison, K. S. Schulz posted to biodiversity databases dbhack1 programming software by rvosa on 2008-02-07 00:05:35 as
	Proposal for pyloXML level 1, version 0.2 [My Copy] Vol. 2005, No. August 9. (2005) by Ethalinda K. S. Cannon, C. M. Zmasek posted to classification dbhack1 phyloinformatics programming software taxonomy xml by rvosa on 2008-02-07 00:05:12 as
	Extensible Markup Language (XML) 1.0 (Third Edition) [My Copy] Vol. 2005, No. August 9, 2005. (2004) by Tim Bray, Jean Paoli, Sperberg C. M. Mcqueen, Eve Maler, Franois Yergeau posted to dbhack1 programming xml by rvosa on 2008-02-07 00:05:09 as
	Interoperability With Moby 1.0 – It's Better Than Sharing Your Toothbrush! [My Copy] Nature Precedings, pp. 1-65. by Mark Wilkinson posted to dbhack1 phyloinformatics programming xml by rvosa on 2008-02-02 01:43:31 as
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to algorithms alignment data-mining databases dbhack1 methods programming software by rvosa on 2008-02-01 11:05:23 as along with 26 people and 2 groups ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	The Semantic Web: The Roles of XML and RDF [My Copy] IEEE Internet Computing, Vol. 4, No. 5. (2000), pp. 63-74. by Stefan Decker, Sergey Melnik, Frank v. van Harmelen, et al.Dieter Fensel, Michel C. A. Klein, Jeen Broekstra, Michael Erdmann, Ian Horrocks posted to dbhack1 nexml ontology programming xml by rvosa on 2008-02-01 00:36:47 as along with 13 people and 7 groups magnusenger A_Olympia podskalou hamlet smokey937 spinster dullhunk olesm amac mzygmunt matburnham anansi firefly_cmc Philosophy_of_Information Blog_and_Wiki_Research OpenArchive what_is_a_library InterMediaOslo Soslab CooperationStudies
	Mapping XML to OWL Ontologies [My Copy] by Hannes Bohring, Sören Auer posted to dbhack1 nexml ontology programming xml by rvosa on 2008-01-31 23:59:51 as
	Beyond NEXUS: Universal cladistic data objects [My Copy] Cladistics (2001) by K. Nixon, J. Carpenter, S. Borgardt posted to data-mining databases dbhack1 nexml phyloinformatics software by rvosa on 2008-01-30 08:07:20 as
	Phyloinformatics: Toward a Phylogenetic Database [My Copy] Springer In Data Mining in Bioinformatics (2005), pp. 219-241. by R. Page edited by Xindong Wu, Lakhmi Jain, Jason T. L. Wang, Mohammed J. Zaki, Hannu T. T. Toivonen, Dennis Shasha posted to databases dbhack1 phylogeny phyloinformatics by rvosa on 2008-01-30 08:07:14 as
	The relation between ontologies and schema-languages: Translating OIL-specifications in XML-schema [My Copy] Proc. Workshop on Applications of Ontologies and Problem-Solving Methods (2000) by M. Klein, D. Fensel, F. van Harmelen, I. Horrocks posted to dbhack1 nexml ontology programming xml by rvosa on 2008-01-30 08:07:13 as
	Interoperability between Bioinformatics Tools: A Logic Programming Approach [My Copy] Practical Aspects of Declarative Languages: Third International Symposium (2001), pp. 153-168. by J. Iglesias, G. Gupta, E. Pontelli, D. Ranjan posted to algorithms dbhack1 methods phyloinformatics programming software by rvosa on 2008-01-30 08:07:05 as
	Requirements of phylogenetic databases [My Copy] Third IEEE Symposium on BioInformatics and BioEngineering (BIBE'03) (2003), pp. 141-148. by L. Nakhleh, D. Miranker, F. Barbancon posted to databases dbhack1 phylogeny programming software by rvosa on 2008-01-30 08:07:05 as
	NEXUS: An Extensible File Format for Systematic Information [My Copy] Systematic Biology, Vol. 46, No. 4. (1997), pp. 590-621. by David R. Maddison, David L. Swofford, Wayne P. Maddison posted to data-mining dbhack1 nexml phyloinformatics software by rvosa on 2007-11-29 08:27:27 as along with 1 group FAB-lab
	An XML-based system for synthesis of data from disparate databases. [My Copy] J Am Med Inform Assoc, Vol. 13, No. 3. (n 2006), pp. 289-301. by T. Kurc, D. A. Janies, A. D. Johnson, et al.S. Langella, S. Oster, S. Hastings, F. Habib, T. Camerlengo, D. Ervin, U. V. Catalyurek, J. H. Saltz posted to comparative data-mining dbhack1 phyloinformatics reconstruction software by rvosa on 2007-11-27 23:34:46 as along with 1 group FAB-lab
	Taxonomic markup language: applying XML to systematic data [My Copy] Bioinformatics, Vol. 16, No. 4. (1 April 2000), pp. 406-407. by R. Gilmour posted to dbhack1 nexml software taxonomy xml by rvosa on 2007-11-19 22:09:35 as along with 1 person gilmour70
	Prospects for building the tree of life from large sequence databases. [My Copy] Science, Vol. 306, No. 5699. (12 November 2004), pp. 1172-1174. by A. C. Driskell, C. Ané, J. G. Burleigh, M. M. McMahon, B. C. O'meara, M. J. Sanderson posted to data-mining dbhack1 inference phylogeny phyloinformatics by rvosa on 2005-10-13 12:57:20 as along with 1 group FAB-lab
	The small-world dynamics of tree networks and data mining in phyloinformatics. [My Copy] Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1162-1168. by W. H. Piel, M. J. Sanderson, M. J. Donoghue posted to data-mining dbhack1 networks phylogeny phyloinformatics by rvosa on 2005-10-13 12:56:43 as along with 1 group FAB-lab

Note: You may cite this page as: http://www.citeulike.org/user/rvosa/tag/dbhack1

animals	606
vertebrates	463
mammals	447
phylogeny	434
primates	422
methods	235
evolution	235
source-trees	125
dna	125
genetics	118
algorithms	116
mitochondrial	105
comparative	103
likelihood	93
rates	91
data-mining	90
substitution-models	90
speciation	89
divergence	85
invertebrates	85
morphology	82
behaviour	80
classification	80
phyloinformatics	80
biodiversity	77
diversification	76
software	76
sequence-evolution	74
humans	73
clock-like	68
insects	68
programming	65
reconstruction	64
encephalization	62
ecology	58
hominidae	58
genome	57
sequence	57
taxonomy	57
fossils	55
selection	55
models	54
bayesian	52
adaptation	51
parsimony	51
topology	49
biogeography	49
nuclear	49
parasitism	49
databases	48
dbhack1	48
protein	46
supertree	45
characters	42
sociality	40
phylogenomics	37
plants	36
sexual	36
amino-acid	33
inference	32
xml	32
markov-chains	32
monte-carlo	31
morphometrics	31
anthropology	31
extinction	29
bacteria	29
population-genetics	29
life-history	28
mrp	28
nexml	27
alignment	27
contrasts	25
ratio-test	25
karyotyping	20
population	20
lemuridae	20
radiation	20
ontology	19
simulation	19
strepsirrhines	18
rodents	18
conservation	17
statistics	16
birds	16
specialization	14
hybridization	13
viruses	13
predation	12
polymorphism	12
fungi	12
colobinae	12
homology	12
weighting	12
rna	12
networks	12
vision	11
carnivora	11
cebidae	10
graph	10
restriction	10
phenetics	9
platyrrhines	9
fishes	9
recombination	9
estimation	8
polymerase-chain-reaction	8
chiroptera	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
cercopithecidae	6
regions	6
lizards	6
metabolomics	5
alcids	5
variability	5
cercopithecinae	5
cells	4
cheirogaleidae	4
rats	4
graphics	4
catarrhines	4
sine	3
haplorhini	3
cetartiodactyla	2
hylobates	2
tarsiidae	2
dogs	1
nucleic	1
philosophy	1
line	1
shrews	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1

rvosa's dbhack1 [48 articles] Export

rvosa's tags