rvosa's phylogeny [at least 200 articles] Export

Recent papers added to rvosa's library classified by the tag phylogeny. You can also see everyone's phylogeny.

	PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (19 September 2009), 298. by Philippe Gouret, Julie Thompson, Pierre Pontarotti posted to software sequence-evolution protein phyloinformatics phylogeny genome evolution by rvosa on 2009-11-11 03:43:20 as along with 5 people and 2 groups nuin stajich scmelton druvus rschulz FAB-lab Mycology
	BEAST: Bayesian evolutionary analysis by sampling trees. [My Copy] BMC evolutionary biology, Vol. 7, No. 1. (08 November 2007), 214. by Alexei J. Drummond, Andrew Rambaut posted to algorithms bayesian markov-chains methods nexml phylogeny phyloinformatics software xml by rvosa on 2009-05-22 07:02:10 as along with 5 people and 1 group usagi-kirin lizbiogen operon druvus treangen FAB-lab
	A Linear-Time Majority Tree Algorithm [My Copy] Algorithms in Bioinformatics (2003), pp. 216-227. by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms graph methods phylogeny phyloinformatics software topology by rvosa on 2008-12-18 02:35:27 as along with 1 group FAB-lab
	A Randomized Linear-time Majority Tree Algorithm [My Copy] European Conference on Computational Biology (27-30 September 2003) by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms data-mining methods phylogeny phyloinformatics software by rvosa on 2008-12-18 02:26:42 as along with 1 group FAB-lab
	MAXIMUM LIKELIHOOD FRAMEWORK FOR GENETIC SEQUENCE ANALYSIS [My Copy] by Sergei L. Pond posted to algorithms dna estimation inference likelihood methods models phylogeny phyloinformatics sequence-evolution substitution-models by rvosa on 2008-12-18 02:20:47 as along with 1 group FAB-lab
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dbhack1 dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein sequence by rvosa on 2008-12-18 02:07:33 as along with 1 person and 1 group mcox FAB-lab
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dbhack1 dna evolution homology methods phylogeny protein sequence by rvosa on 2008-12-18 02:00:54 as along with 1 person and 1 group Schmidtc FAB-lab
	Mixture models in phylogenetic inference [My Copy] In Statistical and computational challenges in molecular phylogenetics and evolution (28 April 2008) by Mark Pagel posted to bayesian markov-chains methods monte-carlo phylogeny rates substitution-models by rvosa on 2008-08-18 02:27:00 as along with 1 group FAB-lab
	The Tree of Life Web Project [My Copy] Zootaxa, No. 1668. (2007), pp. 19-40. by David R. Maddison, Katja-Sabine Schulz, Wayne P. Maddison posted to biodiversity data-mining databases dbhack1 evolution phylogeny phyloinformatics taxonomy by rvosa on 2008-08-13 01:07:30 as along with 1 group FAB-lab
	Cases in which Parsimony or Compatibility Methods Will be Positively Misleading [My Copy] Systematic Zoology, Vol. 27, No. 4. (1978), pp. 401-410. by Joseph Felsenstein posted to characters inference methods parsimony phylogeny by rvosa on 2008-08-12 05:17:15 as along with 1 group FAB-lab
	Large Punctuational Contribution of Speciation to Evolutionary Divergence at the Molecular Level [My Copy] Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121. by Mark Pagel, Chris Venditti, Andrew Meade posted to clock-like divergence dna evolution phylogeny rates speciation substitution-models by rvosa on 2008-08-09 11:44:50 as along with 5 people and 2 groups vtraag knaseanka brant bpcusack shikin EisenLab FAB-lab
	Phylogenetic Mixture Models Can Reduce Node-Density Artifacts [My Copy] Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293. by Chris Venditti, Andrew Meade, Mark Pagel posted to inference methods models phylogeny sequence-evolution substitution-models by rvosa on 2008-08-09 10:43:22 as along with 1 person and 1 group aprasad FAB-lab
	A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data [My Copy] Syst Biol, Vol. 53, No. 4. (1 August 2004), pp. 571-581. by Mark Pagel, Andrew Meade posted to characters genetics methods models phylogeny sequence substitution-models by rvosa on 2008-08-09 10:21:04 as along with 1 person and 1 group djohnson FAB-lab
	Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes [My Copy] PLoS Comput Biol, Vol. 1, No. 1. (24 June 2005), pp. e3-e3. by D. Barker, M. Pagel posted to genome networks ontology phylogenomics phylogeny phyloinformatics protein proteomics statistics by rvosa on 2008-08-09 09:29:23 as along with 10 people and 1 group jperkins biomcgary skembel Robinder rw294 balajis maryee arunyan bartleby pradiptaray iSEEM
	Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007), pp. S16-S16. by Mark Pagel, Andrew Meade, Daniel Scott posted to genome networks phylogenomics phylogeny protein statistics by rvosa on 2008-08-09 09:25:02 as along with 1 group FAB-lab
	Myxozoa, Polypodium, and the origin of the Bilateria: the phylogenetic position of Endocnidozoa in light of the rediscovery of Buddenbrockia [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 164-169. by J. Zrzavy, V. Hypsa posted to animals classification phylogeny by rvosa on 2008-02-07 00:05:53 as
	Phylogenetic affinities of tarsier in the context of primate Alu repeats [My Copy] Molecular Phylogenetics and Evolution, Vol. 11 (1999), pp. 77-83. by Ewa Zietkiewicz, Chantal Richer, Damian Labuda posted to animals mammals phylogeny primates sequence-evolution vertebrates by rvosa on 2008-02-07 00:05:53 as
	Phylogeny of rhesus monkeys (Macaca mulatta) as revealed by mitochondrial DNA restriction enzyme analysis [My Copy] International Journal of Primatology, Vol. 14 (1993), pp. 587-605. by Y. P. Zhang, L. M. Shi posted to animals mammals mitochondrial phylogeny primates protein restriction vertebrates by rvosa on 2008-02-07 00:05:53 as
	Mitochondrial Cytochrome b Gene Sequences of Old World Monkeys: With Special Reference on Evolution of Asian Colobines [My Copy] Primates, Vol. 39, No. 1. (1998), pp. 39-49. by Ya P. Zhang, Oliver A. Ryder posted to animals colobinae dna evolution mammals mitochondrial phylogeny primates source-trees vertebrates by rvosa on 2008-02-07 00:05:53 as
	Phylogenetic Relationships of Macaques as Inferred from Restriction Endonuclease Analysis of Mitochondrial DNA [My Copy] Folia Primatologia, Vol. 60 (1993), pp. 7-17. by Ya P. Zhang, Shi L. Ming posted to animals genetics mammals mitochondrial phylogeny polymorphism primates restriction vertebrates by rvosa on 2008-02-07 00:05:53 as
	Strepsirrhine phylogeny: Congruence of results from a mitochondrial and a nuclear gene [My Copy] American Journal of Physical Anthropology, Vol. 22 (1996) by A. D. Yoder posted to animals mammals mitochondrial nuclear phylogeny primates source-trees strepsirrhines vertebrates by rvosa on 2008-02-07 00:05:52 as
	Bayesian Phylogenetic Inference Using DNA Sequences: A Markov Chain Monte Carlo Method [My Copy] Molecular Biology and Evolution, Vol. 14, No. 7. (1997), pp. 717-724. by Ziheng Yang, Bruce Rannala posted to bayesian diversification extinction markov-chains monte-carlo phylogeny speciation substitution-models by rvosa on 2008-02-07 00:05:52 as
	Classification and evolution of Asian colobines [My Copy] Folia Primatologia, Vol. 60 (1993), pp. 106-117. by Peng Y. Zhang, Ru P. Liang, Nina G. Jablonski posted to classification colobinae evolution morphology phylogeny taxonomy by rvosa on 2008-02-07 00:05:52 as
	The mitochondrial DNA molecule of Sumatran orangutan and a molecular proposal for two (Bornean and Sumatran) species of orangutan [My Copy] Journal of Molecular Evolution, Vol. 43 (1996), pp. 431-437. by X. Xu, U. Arnason posted to animals mammals mitochondrial phylogeny primates vertebrates by rvosa on 2008-02-07 00:05:52 as
	Molecular phylogeny of the temperate herbaceous tribes of papilionoid legumes: a supertree approach [My Copy] In Advances in Legume Systematics, Vol. 9 (2000), pp. 277-298. by M. F. Wojciechowski, Michael J. Sanderson, K. P. Steele, A. Liston edited by P. Herendeen, A. Bruneau posted to mrp phylogeny plants supertree by rvosa on 2008-02-07 00:05:52 as
	The phylogenetic relationships of the cyanobacterial lichens in the Lecanorales suborder Peltigerineae [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 5. (2003), pp. 419-431. by E. Wiklund, M. Wedin posted to bacteria classification fungi mitochondrial nuclear parsimony phylogeny weighting by rvosa on 2008-02-07 00:05:51 as
	When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders [My Copy] Systematic Biology, Vol. 52, No. 4. (2003), pp. 501-514. by J. J. Wiens, P. T. Chippindale, D. M. Hillis posted to adaptation evolution mitochondrial morphology phylogeny protein selection by rvosa on 2008-02-07 00:05:51 as
	Missing data, incomplete taxa, and phylogenetic accuracy [My Copy] Systematic Biology, Vol. 52, No. 4. (2003), pp. 528-538. by J. J. Wiens posted to characters data-mining fossils methods parsimony phylogeny phyloinformatics simulation by rvosa on 2008-02-07 00:05:51 as
	A novel method for economical diagnosis of cladograms under Sankoff optimization [My Copy] Cladistics, Vol. 10 (1994), pp. 207-213. by Ward C. Wheeler, Kevin Nixon posted to algorithms methods parsimony phylogeny by rvosa on 2008-02-07 00:05:51 as
	Iterative pass optimization of sequence data [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 254-260. by W. C. Wheeler posted to algorithms alignment methods phylogeny sequence by rvosa on 2008-02-07 00:05:51 as
	Combinatorial weights in phylogenetic analysis: a statistical parsimony procedure [My Copy] Cladistics, Vol. 6 (1990), pp. 269-275. by Ward C. Wheeler posted to algorithms methods parsimony phylogeny weighting by rvosa on 2008-02-07 00:05:51 as
	Noise [My Copy] Cladistics, Vol. 15 (1999), pp. 51-64. by John W. Wenzel, Mark E. Siddall posted to methods parsimony phylogeny by rvosa on 2008-02-07 00:05:51 as
	Chromosome Painting Technique Contributes to Constructions of Evolutionary Trees of Lemurs [My Copy] International Journal of Primatology, Vol. 21, No. 5. (November 2000), pp. 905-913. by S. Warter, M. Hauwy, Yves Rumpler posted to animals karyotyping lemuridae mammals phylogeny primates source-trees vertebrates by rvosa on 2008-02-07 00:05:51 as
	rDNA difference and phylogenetic relationships of two species of golden monkeys and three species of leaf monkeys [My Copy] In Primate Research and Conservation (1995) by W. Wang, B. Su, H. Lan, et al.Y. P. Zhang, S. Y. Lin, R. Q. Liu, A. H. Liu, H. G. Hu, Y. X. Xie, D. H. Wu edited by W. P. Xia, Y. Z. Zhang posted to animals mammals phylogeny primates vertebrates by rvosa on 2008-02-07 00:05:51 as
	Phylogenetic Relationships among Two Species of Golden Monkey and Three Species of Leaf Monkey Inferred from rDNA Variation [My Copy] Folia Primatologia, Vol. 65 (1995), pp. 138-143. by Wen Wang, Bing Su, Hong Lan, et al.Ya P. Zhang, Shi Y. Lin, Ai H. Liu, Rui Q. Liu, Wei Z. Ji, Hong G. Hu, You X. Xie, Deng H. Wu posted to animals dna mammals phylogeny primates restriction source-trees vertebrates by rvosa on 2008-02-07 00:05:51 as
	A phylogeny of Chinese leaf monkeys using mitochondrial ND3-ND4 gene sequences [My Copy] International Journal of Primatology, Vol. 18 (November 1997), pp. 305-320. by Wen Wang, Michael R. J. Forstner, Ya P. Zhang, et al. Liu, Y. Wei, Huang, Hong G. Hu, You X. Xie, Deng H. Wu, Don J. Melnick posted to animals dna mammals mitochondrial phylogeny primates sequence source-trees vertebrates by rvosa on 2008-02-07 00:05:51 as
	Comparison between phylogeny of introns and exons in primates [My Copy] Chinese Science Bulletin, Vol. 44, No. 21. (1999), pp. 1940-1946. by N. Wang, R. Chen posted to animals evolution inference mammals phylogeny primates sequence-evolution substitution-models vertebrates by rvosa on 2008-02-07 00:05:51 as
	Morphology versus molecules: resolution of the positions of Nymphalis, Polygonia, and related genera (Lepidoptera: Nymphalidae) [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 213-223. by N. Wahlberg, S. Nylin posted to animals classification insects invertebrates morphology phylogeny sequence taxonomy by rvosa on 2008-02-07 00:05:51 as
	The description of a new marmoset genus, Callicebus (Callitrichinae, Primates), including its molecular phylogenetic status [My Copy] Neotropical Primates, Vol. 11 (2003), pp. 1-10. by M. G. M. van Roosmalen, T. van Roosmalen posted to animals classification mammals phylogeny primates taxonomy vertebrates by rvosa on 2008-02-07 00:05:50 as
	Rapid radiation of the Mediterranean Luciobarbus species (Cyprinidae) after the Messinian salinity crisis of the Mediterranean Sea, inferred from mitochondrial phylogenetic analysis [My Copy] Biological Journal of the Linnean Society, Vol. 80, No. 2. (2003), pp. 207-222. by C. S. Tsigenopoulos, J. D. Durand, E. Unlu, P. Berrebi posted to animals biogeography fishes mitochondrial morphology phylogeny radiation speciation vertebrates by rvosa on 2008-02-07 00:05:50 as
	The influence of phylogeny on the social behaviour of macaques (Primates : Cercopithecidae, genus Macaca) [My Copy] Ethology, Vol. 106, No. 8. (2000), pp. 713-728. by B. Thierry, A. N. Iwaniuk, S. M. Pellis posted to animals behaviour mammals phylogeny primates reconstruction sociality vertebrates by rvosa on 2008-02-07 00:05:50 as
	'Little Brown Lemurs' of Northern Madagascar [My Copy] Folia Primatologia, Vol. 69 (1998), pp. 379-388. by I. Tattersall, R. W. Sussman posted to animals biodiversity ecology lemuridae mammals phylogeny primates source-trees vertebrates by rvosa on 2008-02-07 00:05:49 as
	Phylogenetic relationships of the genus Macaca inferred from DNA sequence [My Copy] In International Symposium: Evolution of Asian Primates (1996) by T. Tanaka, O. Takenaka posted to animals dna mammals phylogeny primates sequence vertebrates by rvosa on 2008-02-07 00:05:49 as
	PAUP*: phylogenetic analysis using parsimony, version 4.0b10 [My Copy] (2003) by D. L. Swofford posted to dbhack1 likelihood parsimony phylogeny phyloinformatics software by rvosa on 2008-02-07 00:05:49 as
	Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia [My Copy] Biological Journal of the Linnean Society, Vol. 80, No. 3. (2003), pp. 469-481. by H. Suzuki, J. J. Sato, K. Tsuchiya, et al.J. Luo, Y. P. Zhang, Y. X. Wang, X. L. Jiang posted to animals clock-like ecology evolution mammals mice mitochondrial nuclear phylogeny radiation rodents speciation vertebrates by rvosa on 2008-02-07 00:05:48 as
	Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models [My Copy] Molecular Biology and Evolution, Vol. 17, No. 6. (2000), pp. 875-881. by Korbinian Strimmer, Vincent Moulton posted to bayesian evolution graph likelihood markov-chains monte-carlo networks phylogeny by rvosa on 2008-02-07 00:05:48 as
	Molecular phylogeny of the endemic Phillipine rodent Apomys (Muridae) and the dynamics of diversification in an oceanic archipelago [My Copy] Biological Journal of the Linnean Society, Vol. 80, No. 4. (2003), pp. 699-716. by S. J. Steppan, C. Zawadzki, L. R. Heany posted to animals biogeography diversification mammals mice phylogeny rodents vertebrates by rvosa on 2008-02-07 00:05:48 as
	Ecological diversification and phylogeny of emydid turtles [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 4. (2003), pp. 577-610. by P. R. Stephens, J. J. Wiens posted to animals data-mining diversification ecology evolution mitochondrial morphology phylogeny phyloinformatics specialization vertebrates by rvosa on 2008-02-07 00:05:48 as
	Distributions of Tree Comparison Metrics - Some New Results [My Copy] Systematic Biology, Vol. 42, No. 2. (1993), pp. 126-141. by M. A. Steel, D. Penny posted to algorithms evolution methods phylogeny topology by rvosa on 2008-02-07 00:05:48 as
	The maximum likelihood point for a phylogenetic tree is not unique [My Copy] Systematic Biology, Vol. 43 (1994), pp. 560-564. by M. A. Steel posted to likelihood methods phylogeny by rvosa on 2008-02-07 00:05:48 as

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animals	606
vertebrates	463
mammals	447
phylogeny	432
primates	420
evolution	233
methods	230
source-trees	125
dna	123
genetics	117
algorithms	114
mitochondrial	104
comparative	102
likelihood	91
rates	90
speciation	89
substitution-models	88
invertebrates	85
data-mining	84
divergence	83
morphology	82
behaviour	80
classification	79
biodiversity	77
phyloinformatics	77
diversification	76
software	74
sequence-evolution	73
humans	72
clock-like	68
insects	68
encephalization	62
reconstruction	62
programming	62
ecology	58
taxonomy	57
sequence	57
hominidae	56
fossils	55
genome	54
models	52
selection	52
adaptation	51
parsimony	51
bayesian	50
topology	49
parasitism	49
nuclear	49
biogeography	49
dbhack1	48
databases	47
supertree	45
protein	44
characters	42
sociality	40
phylogenomics	36
plants	36
sexual	36
xml	32
amino-acid	32
morphometrics	31
inference	31
markov-chains	31
monte-carlo	30
anthropology	30
extinction	29
mrp	28
bacteria	28
life-history	28
nexml	27
population-genetics	27
alignment	25
contrasts	25
ratio-test	24
population	20
radiation	20
karyotyping	20
lemuridae	19
simulation	19
ontology	18
rodents	18
conservation	17
strepsirrhines	17
birds	16
statistics	15
specialization	14
viruses	13
hybridization	13
predation	12
weighting	12
rna	12
homology	11
colobinae	11
fungi	11
vision	11
carnivora	11
networks	11
polymorphism	10
restriction	10
fishes	9
cebidae	9
phenetics	9
graph	9
recombination	9
chiroptera	8
platyrrhines	8
polymerase-chain-reaction	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
estimation	6
regions	6
lizards	6
alcids	5
metabolomics	5
cercopithecidae	5
graphics	4
rats	4
cells	4
cercopithecinae	4
sine	3
variability	3
cheirogaleidae	3
catarrhines	3
cetartiodactyla	2
haplorhini	2
shrews	1
philosophy	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1
line	1
hylobates	1
tarsiidae	1
nucleic	1
dogs	1

rvosa's phylogeny [at least 200 articles] Export

rvosa's tags