rvosa's phyloinformatics [77 articles] Export

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	PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (19 September 2009), 298. by Philippe Gouret, Julie Thompson, Pierre Pontarotti posted to software sequence-evolution protein phyloinformatics phylogeny genome evolution by rvosa on 2009-11-11 03:43:20 as along with 5 people and 2 groups nuin stajich scmelton druvus rschulz FAB-lab Mycology
	A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data [My Copy] Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3080-3087. by Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit posted to xml software programming phyloinformatics ontology nexml dbhack1 databases data-mining by rvosa on 2009-09-07 13:51:13 as along with 11 people and 1 group allysonlister neilswainston fgibson cmzmasek thegoose2 druvus guhjy epigenetics Simplicity tharris dansullivanblk FAB-lab
	A Semantic Web for bioinformatics: goals, tools, systems, applications [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 4. (2008), S1. by Nicola Cannata, Michael Schroder, Roberto Marangoni, Paolo Romano posted to xml software programming phyloinformatics ontology nexml dbhack1 by rvosa on 2009-09-07 13:49:14 as along with 7 people and 1 group artaban421 cmzmasek druvus guhjy mariakmejia bootsy dansullivanblk FAB-lab
	Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt [My Copy] The Semantic Web – ISWC 2004 (2004), pp. 350-364. by Phillip Lord, Sean Bechhofer, Mark D. Wilkinson, et al.Gary Schiltz, Damian Gessler, Duncan Hull, Carole Goble, Lincoln Stein posted to xml software programming phyloinformatics ontology nexml dbhack1 data-mining by rvosa on 2009-09-07 13:46:55 as along with 3 people and 1 group mjbell cmzmasek alanrw FAB-lab
	Biological knowledge management: the emerging role of the Semantic Web technologies. [My Copy] Briefings in Bioinformatics, Vol. 10, No. 4. (19 May 2009), pp. 392-407. by E. Antezana, M. Kuiper, V. Mironov posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2009-07-30 21:14:33 as along with 1 group FAB-lab
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to data-mining databases dbhack1 methods nexml ontology phyloinformatics programming software xml by rvosa on 2009-07-30 21:06:03 as along with 10 people and 2 groups jfr Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson FAB-lab NaCTeM
	The ontology of biological taxa [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i313-321. by Stefan Schulz, Holger Stenzhorn, Martin Boeker posted to classification data-mining databases dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2009-07-25 01:53:20 as along with 4 people and 2 groups martingerner orovellotti guhjy dullhunk FAB-lab Eco informatics
	PhyloExplorer: a web server to validate, explore and query phylogenetic trees [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (18 May 2009), 108. by Vincent Ranwez, Nicolas Clairon, Frederic Delsuc, et al.Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry posted to algorithms biodiversity classification data-mining databases graph graphics methods phyloinformatics programming software taxonomy by rvosa on 2009-06-27 09:11:43 as along with 1 person and 1 group djkt FAB-lab
	Principles for a names-based cyberinfrastructure to serve all of biology [My Copy] Zootaxa, No. 1950. (2008), pp. 153-163. by David J. Patterson, Sarah Faulwetter, Alexey Shipunov posted to algorithms biodiversity classification data-mining databases phyloinformatics programming software taxonomy by rvosa on 2009-06-09 23:07:39 as along with 1 group FAB-lab
	Initial Implementation of a Comparative Data Analysis Ontology [My Copy] Evolutionary Bioinformatics, No. 5. (2009), pp. 47-66. by Francisco Prosdocimi, Brandon Chisham, Enrico Pontelli, Julie D. Thompson, Arlin Stoltzfus posted to nexml ontology phyloinformatics software xml by rvosa on 2009-05-30 06:45:33 as along with 1 group FAB-lab
	BEAST: Bayesian evolutionary analysis by sampling trees. [My Copy] BMC evolutionary biology, Vol. 7, No. 1. (08 November 2007), 214. by Alexei J. Drummond, Andrew Rambaut posted to algorithms bayesian markov-chains methods nexml phylogeny phyloinformatics software xml by rvosa on 2009-05-22 07:02:10 as along with 5 people and 1 group usagi-kirin lizbiogen operon druvus treangen FAB-lab
	A Linear-Time Majority Tree Algorithm [My Copy] Algorithms in Bioinformatics (2003), pp. 216-227. by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms graph methods phylogeny phyloinformatics software topology by rvosa on 2008-12-18 02:35:27 as along with 1 group FAB-lab
	A Randomized Linear-time Majority Tree Algorithm [My Copy] European Conference on Computational Biology (27-30 September 2003) by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms data-mining methods phylogeny phyloinformatics software by rvosa on 2008-12-18 02:26:42 as along with 1 group FAB-lab
	MAXIMUM LIKELIHOOD FRAMEWORK FOR GENETIC SEQUENCE ANALYSIS [My Copy] by Sergei L. Pond posted to algorithms dna estimation inference likelihood methods models phylogeny phyloinformatics sequence-evolution substitution-models by rvosa on 2008-12-18 02:20:47 as along with 1 group FAB-lab
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dbhack1 dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein sequence by rvosa on 2008-12-18 02:07:33 as along with 1 person and 1 group mcox FAB-lab
	The Tree of Life Web Project [My Copy] Zootaxa, No. 1668. (2007), pp. 19-40. by David R. Maddison, Katja-Sabine Schulz, Wayne P. Maddison posted to biodiversity data-mining databases dbhack1 evolution phylogeny phyloinformatics taxonomy by rvosa on 2008-08-13 01:07:30 as along with 1 group FAB-lab
	Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes [My Copy] PLoS Comput Biol, Vol. 1, No. 1. (24 June 2005), pp. e3-e3. by D. Barker, M. Pagel posted to genome networks ontology phylogenomics phylogeny phyloinformatics protein proteomics statistics by rvosa on 2008-08-09 09:29:23 as along with 10 people and 1 group jperkins biomcgary skembel Robinder rw294 balajis maryee arunyan bartleby pradiptaray iSEEM
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted to algorithms alignment databases data-mining genome likelihood methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:27:51 as along with 7 people and 3 groups cgaugain operon ana indigoviolet dquest ninch cerca structural_bioinformatics Bioinformatics EisenLab
	Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2596-2603. by Jean-Francois Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, Francois Rechenmann, Guy Perriere posted to algorithms alignment databases data-mining genome methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:21:45 as along with 2 people and 2 groups ana stajich structural_bioinformatics Bioinformatics
	Improving the specificity of high-throughput ortholog prediction. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (28 May 2006) by Debra L. Fulton, Yvonne Y. Li, Matthew R. Laird, Benjamin G. Horsman, Fiona M. Roche, Fiona S. Brinkman posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:17:36 as along with 4 people and 2 groups operon indigoviolet kaspermunch cerca Bioinformatics EisenLab
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa on 2008-08-08 07:02:46 as along with 4 people and 2 groups GustavoLacerda cgaugain dandaman stajich FAB-lab Mycology
	Integrating biological databases [My Copy] Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:04 as along with 10 people ptrobajo neils neilernst eweaver vaija laszlo8 hpiwowar fisherp lei cjeans
	Creating a bioinformatics nation. [My Copy] Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120. by Lincoln Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:01 as along with 13 people and 1 group pekrau druvus irenas andytseng balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes fgibson dbk-lab
	XML: a lingua franca for science? [My Copy] Trends in Biotechnology, Vol. 18, No. 8. (1 August 2000), pp. 331-333. by Emmanuel Barillot, Frederic Achard posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 01:23:44 as along with 1 person cjeans
	XML, bioinformatics and data integration. [My Copy] Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 115-125. by F. Achard, G. Vaysseix, E. Barillot posted to data-mining dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 00:39:04 as along with 7 people and 2 groups irenas ingo andytseng yas dullhunk myui cjeans dbk-lab T_lab
	Proposal for phyloXML level 1, version 0.3 [My Copy] (2005) by Ethalinda K. S. Cannon, Christian M. Zmasek posted to classification dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2008-05-13 00:08:43 as
	Relative position of the Cheirogaleidae in strepsirhine phylogeny: A comparison of morphological and molecular methods and results [My Copy] American Journal of Physical Anthropology, Vol. 94 (1994), pp. 24-46. by A. D. Yoder posted to animals biogeography cheirogaleidae data-mining mammals morphology phyloinformatics primates sequence strepsirrhines vertebrates by rvosa on 2008-02-07 00:05:52 as
	Missing data, incomplete taxa, and phylogenetic accuracy [My Copy] Systematic Biology, Vol. 52, No. 4. (2003), pp. 528-538. by J. J. Wiens posted to characters data-mining fossils methods parsimony phylogeny phyloinformatics simulation by rvosa on 2008-02-07 00:05:51 as
	PAUP*: phylogenetic analysis using parsimony, version 4.0b10 [My Copy] (2003) by D. L. Swofford posted to dbhack1 likelihood parsimony phylogeny phyloinformatics software by rvosa on 2008-02-07 00:05:49 as
	Bio::CDAT - An Object for Evolutionary Analysis of Data [My Copy] (2006) by A. Stoltzfus, R. A. Vos, J. Reese, W. Qiu posted to alignment dbhack1 evolution inference phyloinformatics programming software by rvosa on 2008-02-07 00:05:48 as
	Ecological diversification and phylogeny of emydid turtles [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 4. (2003), pp. 577-610. by P. R. Stephens, J. J. Wiens posted to animals data-mining diversification ecology evolution mitochondrial morphology phylogeny phyloinformatics specialization vertebrates by rvosa on 2008-02-07 00:05:48 as
	Inferring Complex Phylogenies Using Parsimony: An Empirical Approach Using Three Large DNA Data Sets for Angiosperms [My Copy] Systematic Biology, Vol. 47, No. 1. (1998), pp. 32-42. by D. E. Soltis, P. S. Soltis, M. E. Mort, et al.M. W. Chase, V. Savolainen, S. B. Hoot, C. M. Morton posted to data-mining parsimony phylogeny phyloinformatics plants by rvosa on 2008-02-07 00:05:48 as
	Primate Phylogeny: Morphological vs Molecular Results [My Copy] Molecular Phylogenetics and Evolution, Vol. 5, No. 1. (1996), pp. 102-154. by Jeheskel Shoshani, Colin P. Groves, Elwyn L. Simons, Gregg F. Gunnell posted to animals characters data-mining mammals morphology phylogeny phyloinformatics primates source-trees vertebrates by rvosa on 2008-02-07 00:05:47 as along with 1 person tomasw
	Review of morphological evidence on the phylogeny of basal Hymenoptera (Insecta), with a discussion of the ordering of characters [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 2. (2003), pp. 209-243. by S. Schulmeister posted to animals characters data-mining insects invertebrates methods morphology phylogeny phyloinformatics by rvosa on 2008-02-07 00:05:47 as
	Phylogenetics of Flowering Plants Based on Combined Analysis of Plastid atpB and rbcL Gene Sequences [My Copy] Systematic Biology, Vol. 49, No. 2. (2000), pp. 306-362. by Vincent Savolainen, Mark W. Chase, Sara B. Hoot, Cynthia M. Morton, Douglas E. Soltis, Clemens Bayer posted to data-mining genetics phylogeny phyloinformatics plants by rvosa on 2008-02-07 00:05:46 as
	The growth of phylogenetic information and the need for a phylogenetic database [My Copy] Systematic Biology, Vol. 42 (1993), pp. 562-568. by Michael J. Sanderson, B. Baldwin, G. Bharathan, et al.C. Campbell, D. Ferguson, J. M. Porter, C. V. Dohlen, M. F. Wojciechowski, M. J. Donoghue posted to data-mining databases dbhack1 phylogeny phyloinformatics by rvosa on 2008-02-07 00:05:46 as
	Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets [My Copy] Molecular Biology and Evolution, Vol. 14 (1997), pp. 248-265. by Maryellen Ruvolo posted to animals data-mining hominidae humans mammals phyloinformatics primates vertebrates by rvosa on 2008-02-07 00:05:45 as
	Taxon sampling, bioinformatics, and phylogenomics [My Copy] Systematic Biology, Vol. 52, No. 1. (2003), pp. 119-124. by M. S. Rosenberg, S. Kumar posted to methods phylogenomics phyloinformatics by rvosa on 2008-02-07 00:05:44 as
	Building phylogenies: are the big easy? [My Copy] Trends in Ecology and Evolution, Vol. 12, No. 2. (1997) by Andy Purvis, Donald L. J. Quicke posted to methods phylogeny phyloinformatics by rvosa on 2008-02-07 00:05:42 as
	A modification to Baum and Ragan's method for combining phylogenetic trees [My Copy] Systematic Biology, Vol. 44, No. 2. (1995), pp. 251-255. by Andy Purvis posted to methods mrp phyloinformatics supertree weighting by rvosa on 2008-02-07 00:05:42 as
	Phylogenetic data base schema [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 159-159. by K. C. Nixon posted to data-mining databases dbhack1 phylogeny phyloinformatics programming by rvosa on 2008-02-07 00:05:39 as
	Sampling strategies for delimiting species: Genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata : Liolaemidae) in Andean-Patagonian South America [My Copy] Systematic Biology, Vol. 52, No. 2. (2003), pp. 159-185. by M. Morando, L. J. Avila, J. W. Sites posted to animals biodiversity biogeography data-mining evolution lizards methods phyloinformatics population population-genetics regions speciation substitution-models taxonomy vertebrates by rvosa on 2008-02-07 00:05:38 as
	Phylogeny and evolution of calcareous sponges: Monophyly of Calcinea and Calcaronea, high level of morphological homoplasy, and the primitive nature of axial symmetry [My Copy] Systematic Biology, Vol. 52, No. 3. (2003), pp. 311-333. by M. Manuel, C. Borchiellini, E. Alivon, Y. Le Parco, J. Vacelet, Boury N. Esnault posted to animals characters classification data-mining evolution morphology phylogeny phyloinformatics reconstruction by rvosa on 2008-02-07 00:05:36 as
	Mesquite: a modular system for evolutionary analysis. [My Copy] (2001) by Wayne P. Maddison, D. R. Maddison posted to alignment comparative data-mining dbhack1 evolution nexml phylogeny phyloinformatics programming software by rvosa on 2008-02-07 00:05:36 as
	Phylogenetic utility of the first two introns of the S7 ribosomal protein gene in African electric fishes (Mormyroidea: Teleostei) and congruence with other molecular markers [My Copy] Biological Journal of the Linnean Society, Vol. 78, No. 2. (2003), pp. 273-292. by S. Lavoue, J. P. Sullivan, C. D. Hopkins posted to animals data-mining fishes phylogeny phyloinformatics vertebrates by rvosa on 2008-02-07 00:05:34 as
	Type ISTS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia : Carnivora) [My Copy] Systematic Biology, Vol. 52, No. 5. (2003), pp. 571-593. by K. P. Koepfli, R. K. Wayne posted to animals bayesian carnivora data-mining genetics likelihood mitochondrial nuclear parsimony phylogeny phyloinformatics vertebrates by rvosa on 2008-02-07 00:05:34 as
	A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes) [My Copy] Systematic Zoology, Vol. 38 (1989), pp. 7-25. by A. G. Kluge posted to animals data-mining methods phylogeny phyloinformatics vertebrates by rvosa on 2008-02-07 00:05:34 as
	Tree-length distribution skewness: an indicator of phylogenetic information [My Copy] Systematic Zoology, Vol. 40, No. 3. (1991), pp. 257-270. by John P. Huelsenbeck posted to characters methods phylogeny phyloinformatics topology by rvosa on 2008-02-07 00:05:31 as
	Analyzing large data sets in reasonable times: Solutions for composite optima [My Copy] Cladistics, Vol. 15, No. 4. (1999), pp. 415-428. by P. A. Goloboff posted to algorithms methods parsimony phyloinformatics by rvosa on 2008-02-07 00:05:18 as
	Identifying conflicting signal in a multigene analysis reveals a highly resolved tree: The phylogeny of Rodentia (Mammalia) [My Copy] Systematic Biology, Vol. 52, No. 5. (2003), pp. 604-617. by R. W. Debry posted to animals bayesian dna likelihood mammals markov-chains monte-carlo nuclear phylogeny phyloinformatics protein rodents vertebrates by rvosa on 2008-02-07 00:05:14 as

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animals	606
vertebrates	463
mammals	447
phylogeny	432
primates	420
evolution	233
methods	230
source-trees	125
dna	123
genetics	117
algorithms	114
mitochondrial	104
comparative	102
likelihood	91
rates	90
speciation	89
substitution-models	88
invertebrates	85
data-mining	84
divergence	83
morphology	82
behaviour	80
classification	79
biodiversity	77
phyloinformatics	77
diversification	76
software	74
sequence-evolution	73
humans	72
clock-like	68
insects	68
encephalization	62
reconstruction	62
programming	62
ecology	58
taxonomy	57
sequence	57
hominidae	56
fossils	55
genome	54
models	52
selection	52
adaptation	51
parsimony	51
bayesian	50
topology	49
parasitism	49
nuclear	49
biogeography	49
dbhack1	48
databases	47
supertree	45
protein	44
characters	42
sociality	40
phylogenomics	36
plants	36
sexual	36
xml	32
amino-acid	32
morphometrics	31
inference	31
markov-chains	31
monte-carlo	30
anthropology	30
extinction	29
mrp	28
bacteria	28
life-history	28
nexml	27
population-genetics	27
alignment	25
contrasts	25
ratio-test	24
population	20
radiation	20
karyotyping	20
lemuridae	19
simulation	19
ontology	18
rodents	18
conservation	17
strepsirrhines	17
birds	16
statistics	15
specialization	14
viruses	13
hybridization	13
predation	12
weighting	12
rna	12
homology	11
colobinae	11
fungi	11
vision	11
carnivora	11
networks	11
polymorphism	10
restriction	10
fishes	9
cebidae	9
phenetics	9
graph	9
recombination	9
chiroptera	8
platyrrhines	8
polymerase-chain-reaction	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
estimation	6
regions	6
lizards	6
alcids	5
metabolomics	5
cercopithecidae	5
graphics	4
rats	4
cells	4
cercopithecinae	4
sine	3
variability	3
cheirogaleidae	3
catarrhines	3
cetartiodactyla	2
haplorhini	2
shrews	1
philosophy	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1
line	1
hylobates	1
tarsiidae	1
nucleic	1
dogs	1

rvosa's phyloinformatics [77 articles] Export

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