rvosa's programming [62 articles] Export

Recent papers added to rvosa's library classified by the tag programming. You can also see everyone's programming.

	A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data [My Copy] Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3080-3087. by Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit posted to xml software programming phyloinformatics ontology nexml dbhack1 databases data-mining by rvosa on 2009-09-07 13:51:13 as along with 11 people and 1 group allysonlister neilswainston fgibson cmzmasek thegoose2 druvus guhjy epigenetics Simplicity tharris dansullivanblk FAB-lab
	A Semantic Web for bioinformatics: goals, tools, systems, applications [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 4. (2008), S1. by Nicola Cannata, Michael Schroder, Roberto Marangoni, Paolo Romano posted to xml software programming phyloinformatics ontology nexml dbhack1 by rvosa on 2009-09-07 13:49:14 as along with 7 people and 1 group artaban421 cmzmasek druvus guhjy mariakmejia bootsy dansullivanblk FAB-lab
	Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt [My Copy] The Semantic Web – ISWC 2004 (2004), pp. 350-364. by Phillip Lord, Sean Bechhofer, Mark D. Wilkinson, et al.Gary Schiltz, Damian Gessler, Duncan Hull, Carole Goble, Lincoln Stein posted to xml software programming phyloinformatics ontology nexml dbhack1 data-mining by rvosa on 2009-09-07 13:46:55 as along with 3 people and 1 group mjbell cmzmasek alanrw FAB-lab
	Biological knowledge management: the emerging role of the Semantic Web technologies. [My Copy] Briefings in Bioinformatics, Vol. 10, No. 4. (19 May 2009), pp. 392-407. by E. Antezana, M. Kuiper, V. Mironov posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2009-07-30 21:14:33 as along with 1 group FAB-lab
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to data-mining databases dbhack1 methods nexml ontology phyloinformatics programming software xml by rvosa on 2009-07-30 21:06:03 as along with 10 people and 2 groups jfr Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson FAB-lab NaCTeM
	Advancing translational research with the Semantic Web [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007), S2. by Alan Ruttenberg, Tim Clark, William Bug, et al.Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H. Cheung posted to data-mining databases dbhack1 methods nexml ontology programming software xml by rvosa on 2009-07-30 21:04:48 as along with 26 people and 4 groups beanformer artaban421 nicklynch vkwn eesruiz Effie simonmcbride druvus gmcmahon fgibson nuin daforerog guhjy Cortel wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan dansullivanblk FAB-lab ImagCom - Biomedical Text Computing NaCTeM Evidence-based-medicine
	The ontology of biological taxa [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i313-321. by Stefan Schulz, Holger Stenzhorn, Martin Boeker posted to classification data-mining databases dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2009-07-25 01:53:20 as along with 4 people and 2 groups martingerner orovellotti guhjy dullhunk FAB-lab Eco informatics
	PhyloExplorer: a web server to validate, explore and query phylogenetic trees [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (18 May 2009), 108. by Vincent Ranwez, Nicolas Clairon, Frederic Delsuc, et al.Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry posted to algorithms biodiversity classification data-mining databases graph graphics methods phyloinformatics programming software taxonomy by rvosa on 2009-06-27 09:11:43 as along with 1 person and 1 group djkt FAB-lab
	Evolutionary Data Leaping to Web 3.0: Some Highlights From NESCent's Third Hackathon [My Copy] In ASN/SSB/SSE meeting (2009) by Hilmar Lapp, Arlin Stoltzfus, Todd J. Vision, Rutger A. Vos posted to algorithms data-mining databases dbhack1 evolution nexml ontology programming software xml by rvosa on 2009-06-17 10:20:28 as along with 1 group FAB-lab
	Principles for a names-based cyberinfrastructure to serve all of biology [My Copy] Zootaxa, No. 1950. (2008), pp. 153-163. by David J. Patterson, Sarah Faulwetter, Alexey Shipunov posted to algorithms biodiversity classification data-mining databases phyloinformatics programming software taxonomy by rvosa on 2009-06-09 23:07:39 as along with 1 group FAB-lab
	From XML to RDF: how semantic web technologies will change the design of 'omic' standards [My Copy] Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103. by Xiaoshu Wang, Robert Gorlitsky, Jonas S. Almeida posted to data-mining databases ontology programming software xml by rvosa on 2009-04-21 02:43:30 as along with 15 people and 3 groups egonw eesruiz druvus badger_master irenas andytseng moborg wnpx dullhunk hpiwowar ianturton mza jmuhlich ibuch dansullivanblk ImagCom - Biomedical Text Computing dbk-lab SorgerLab
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to genetics genome methods ontology programming by rvosa on 2008-08-12 07:52:51 as along with 40 people and 3 groups singhsh epigenetics davidmam Thaverkamp druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck bpcusack 8_01 logics of knowledge FAB-lab
	The Ensembl genome database project. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 38-41. by T. Hubbard, D. Barker, E. Birney, et al.G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, M. Clamp posted to data-mining databases dbhack1 genome programming software by rvosa on 2008-08-11 07:15:41 as along with 7 people and 1 group timhubbard niallhaslam brdwilde incovoma kynn raylim CitoJam FAB-lab
	The 2006 NESCent Phyloinformatics Hackathon: A Field Report [My Copy] Evolutionary Bioinformatics, Vol. 3 (2007), pp. 287-296. by Hilmar Lapp, Sendu Bala, James P. Balhoff, et al.Amy Bouck, Naohisa Goto, Mark Holder, Richard Holland, Alisha Holloway, Toshiaki Katayama, Paul O. Lewis, Aaron J. Mackey, Brian I. Osborne, William H. Piel, Sergei, Art F. Y. Poon, Wei-Gang Qiu, Jason E. Stajich, Arlin Stoltzfus, Tobias Thierer, Albert J. Vilella, Rutger A. Vos, Christian M. Zmasek, Derrick J. Zwickl, Todd J. Vision posted to algorithms methods programming by rvosa on 2008-08-08 07:37:01 as
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa on 2008-08-08 07:02:46 as along with 4 people and 2 groups GustavoLacerda cgaugain dandaman stajich FAB-lab Mycology
	Integrating biological databases [My Copy] Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:04 as along with 10 people ptrobajo neils neilernst eweaver vaija laszlo8 hpiwowar fisherp lei cjeans
	Creating a bioinformatics nation. [My Copy] Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120. by Lincoln Stein posted to data-mining databases dbhack1 phyloinformatics programming software xml by rvosa on 2008-05-13 01:24:01 as along with 13 people and 1 group pekrau druvus irenas andytseng balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes fgibson dbk-lab
	XML: a lingua franca for science? [My Copy] Trends in Biotechnology, Vol. 18, No. 8. (1 August 2000), pp. 331-333. by Emmanuel Barillot, Frederic Achard posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 01:23:44 as along with 1 person cjeans
	GraphML progress report: Structural layer proposal [My Copy] (2002) by U. Brandes, M. Eiglsperger, I. Herman, M. Himsolt, M. Marshall posted to dbhack1 nexml programming software xml by rvosa on 2008-05-13 01:08:04 as along with 2 people robert85 yiweicao
	Representation and Retrieval Method for Molecular Phylogenetic Tree Data Based on XML [My Copy] IPSJ SIG Notes, Vol. 99, No. 61. (1999), pp. 31-36. by Masuyama Tomohisa, Kishinami Risa, Yoshikawa Takanobu, Matsuda Hideo, Hashimoto Akihiro posted to data-mining databases dbhack1 nexml programming software xml by rvosa on 2008-05-13 00:49:40 as
	XML, bioinformatics and data integration. [My Copy] Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 115-125. by F. Achard, G. Vaysseix, E. Barillot posted to data-mining dbhack1 nexml phyloinformatics programming software xml by rvosa on 2008-05-13 00:39:04 as along with 7 people and 2 groups irenas ingo andytseng yas dullhunk myui cjeans dbk-lab T_lab
	Proposal for phyloXML level 1, version 0.3 [My Copy] (2005) by Ethalinda K. S. Cannon, Christian M. Zmasek posted to classification dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa on 2008-05-13 00:08:43 as
	Lifting XML Schema to OWL [My Copy] Web Engineering (2004), pp. 354-358. by Matthias Ferdinand, Christian Zirpins, David Trastour posted to dbhack1 ontology programming software xml by rvosa on 2008-02-20 16:22:09 as
	Mapping XML to Existing OWL Ontologies [My Copy] In International Conference WWW/Internet 2006 (2006), pp. 72-77. by Toni Rodrigues, Pedro Rosa, Jorge Cardoso edited by Pedro Isaías, Miguel B. Nunes, Inmaculada J. Martínez posted to dbhack1 ontology programming software xml by rvosa on 2008-02-20 16:15:03 as
	Using Perl for Statistics: Data Processing and Statistical Computing [My Copy] Journal of Statistical Software, Vol. 11, No. 1. (May 2004) by Giovanni Baiocchi posted to algorithms data-mining methods programming software by rvosa on 2008-02-08 03:21:56 as
	Inching toward Reality: An Improved Likelihood Model of Sequence Evolution [My Copy] Journal of Molecular Evolution, Vol. 34 (1992), pp. 3-16. by Jeffrey L. Thorne, Hirohisa Kishino, Joseph Felsenstein posted to algorithms alignment evolution likelihood methods programming substitution-models by rvosa on 2008-02-07 00:05:50 as
	SDD Part 0: Introduction and Primer to the SDD Standard [My Copy] Vol. 2005, No. August, 9. (2003) by Kevin Thiele posted to dbhack1 programming xml by rvosa on 2008-02-07 00:05:50 as
	Bio::CDAT - An Object for Evolutionary Analysis of Data [My Copy] (2006) by A. Stoltzfus, R. A. Vos, J. Reese, W. Qiu posted to alignment dbhack1 evolution inference phyloinformatics programming software by rvosa on 2008-02-07 00:05:48 as
	XGMML (eXtensible Graph Markup and Modeling Language) 1.0 Draft Specification. [My Copy] Vol. 2005, No. August 9. (2001) by J. Punin, Mukkai Krishnamoorthy posted to dbhack1 graph networks programming xml by rvosa on 2008-02-07 00:05:42 as
	Analyses of Phylogenetics and Evolution: the ape Package [My Copy] (2003) by E. Paradis, Korbinian Strimmer, J. Claude, Y. Noel, B. Bolker posted to diversification methods models programming rates reconstruction software topology by rvosa on 2008-02-07 00:05:41 as
	Phylogenetic data base schema [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 159-159. by K. C. Nixon posted to data-mining databases dbhack1 phylogeny phyloinformatics programming by rvosa on 2008-02-07 00:05:39 as
	Dictionary of Algorithms and Data Structures [My Copy] (August 2005) by T. Nis posted to algorithms programming by rvosa on 2008-02-07 00:05:39 as
	SOAP Version 1.2, W3C Recommendation, 24 June 2003 [My Copy] Vol. 2005, No. August 9. (2003) by N. Mitra posted to dbhack1 programming xml by rvosa on 2008-02-07 00:05:37 as
	Equations of state calculations by fast computing machines [My Copy] J. Chem. Phys., Vol. 21 (1953), pp. 1087-1091. by N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, E. Teller posted to algorithms programming by rvosa on 2008-02-07 00:05:37 as
	Mesquite: a modular system for evolutionary analysis. [My Copy] (2001) by Wayne P. Maddison, D. R. Maddison posted to alignment comparative data-mining dbhack1 evolution nexml phylogeny phyloinformatics programming software by rvosa on 2008-02-07 00:05:36 as
	The Tree of Life Web Project [My Copy] (2004) by D. R. Maddison, K. S. Schulz posted to biodiversity databases dbhack1 programming software by rvosa on 2008-02-07 00:05:35 as
	Bonsai: teaching a clown to prune trees [My Copy] No. CMPT TR 91-6. (1991) by L. Hafer posted to algorithms programming topology by rvosa on 2008-02-07 00:05:29 as
	Design Patterns: Elements of Reusable Software Components [My Copy] (1995) by Erich Gamma, Richard Helm, Ralph Johnson, John Vlissides posted to programming by rvosa on 2008-02-07 00:05:18 as
	PAL: An object-oriented programming library for molecular evolution and phylogenetics [My Copy] Bioinformatics, Vol. 17 (2001), pp. 662-663. by A. Drummond, Korbinian Strimmer posted to evolution phylogeny programming software by rvosa on 2008-02-07 00:05:16 as
	Object Oriented Perl [My Copy] (1999) by Damian Conway posted to programming by rvosa on 2008-02-07 00:05:13 as
	A relational model of data for large shared data banks [My Copy] Communications of the ACM, Vol. 13, No. 6. (1970), pp. 377-387. by E. F. Codd posted to databases programming by rvosa on 2008-02-07 00:05:13 as
	Proposal for pyloXML level 1, version 0.2 [My Copy] Vol. 2005, No. August 9. (2005) by Ethalinda K. S. Cannon, C. M. Zmasek posted to classification dbhack1 phyloinformatics programming software taxonomy xml by rvosa on 2008-02-07 00:05:12 as
	The object-oriented implementation of a document editor [My Copy] In Object-Oriented Programming Systems, Languages and Applications Conference Proceedings (1992), pp. 154-165. by Paul R. Calder, Mark A. Linton posted to programming by rvosa on 2008-02-07 00:05:11 as
	Glyphs: Flyweight objects for user interfaces [My Copy] In ACM User Interface Software Technologies Conference (1990), pp. 92-101. by Paul R. Calder, Mark A. Linton posted to programming by rvosa on 2008-02-07 00:05:11 as
	Extensible Markup Language (XML) 1.0 (Third Edition) [My Copy] Vol. 2005, No. August 9, 2005. (2004) by Tim Bray, Jean Paoli, Sperberg C. M. Mcqueen, Eve Maler, Franois Yergeau posted to dbhack1 programming xml by rvosa on 2008-02-07 00:05:09 as
	Organization and Maintenance of Large Ordered Indexes [My Copy] Acta Informatica, Vol. 1 (1972), pp. 173-189. by Rudolf Bayer, E. M. Mccreight posted to databases programming by rvosa on 2008-02-07 00:05:08 as
	Binary B-Trees for Virtual Memory [My Copy] In ACM-SIGFIDET Workshop (1971), pp. 219-235. by Rudolf Bayer posted to programming by rvosa on 2008-02-07 00:05:08 as
	Overcoming The Object-Relational Impedance Mismatch [My Copy] In Agile database techniques (2003) by Scott Ambler posted to databases programming software by rvosa on 2008-02-07 00:05:06 as
	GNU General Public License version 2 [My Copy] (1991) posted to programming software by rvosa on 2008-02-07 00:05:06 as
	Interoperability With Moby 1.0 – It's Better Than Sharing Your Toothbrush! [My Copy] Nature Precedings, pp. 1-65. by Mark Wilkinson posted to dbhack1 phyloinformatics programming xml by rvosa on 2008-02-02 01:43:31 as

Note: You may cite this page as: http://www.citeulike.org/user/rvosa/tag/programming

Result page: 1 2 Next

animals	606
vertebrates	463
mammals	447
phylogeny	432
primates	420
evolution	233
methods	230
source-trees	125
dna	123
genetics	117
algorithms	114
mitochondrial	104
comparative	102
likelihood	91
rates	90
speciation	89
substitution-models	88
invertebrates	85
data-mining	84
divergence	83
morphology	82
behaviour	80
classification	79
biodiversity	77
phyloinformatics	77
diversification	76
software	74
sequence-evolution	73
humans	72
clock-like	68
insects	68
encephalization	62
reconstruction	62
programming	62
ecology	58
taxonomy	57
sequence	57
hominidae	56
fossils	55
genome	54
models	52
selection	52
adaptation	51
parsimony	51
bayesian	50
topology	49
parasitism	49
nuclear	49
biogeography	49
dbhack1	48
databases	47
supertree	45
protein	44
characters	42
sociality	40
phylogenomics	36
plants	36
sexual	36
xml	32
amino-acid	32
morphometrics	31
inference	31
markov-chains	31
monte-carlo	30
anthropology	30
extinction	29
mrp	28
bacteria	28
life-history	28
nexml	27
population-genetics	27
alignment	25
contrasts	25
ratio-test	24
population	20
radiation	20
karyotyping	20
lemuridae	19
simulation	19
ontology	18
rodents	18
conservation	17
strepsirrhines	17
birds	16
statistics	15
specialization	14
viruses	13
hybridization	13
predation	12
weighting	12
rna	12
homology	11
colobinae	11
fungi	11
vision	11
carnivora	11
networks	11
polymorphism	10
restriction	10
fishes	9
cebidae	9
phenetics	9
graph	9
recombination	9
chiroptera	8
platyrrhines	8
polymerase-chain-reaction	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
estimation	6
regions	6
lizards	6
alcids	5
metabolomics	5
cercopithecidae	5
graphics	4
rats	4
cells	4
cercopithecinae	4
sine	3
variability	3
cheirogaleidae	3
catarrhines	3
cetartiodactyla	2
haplorhini	2
shrews	1
philosophy	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1
line	1
hylobates	1
tarsiidae	1
nucleic	1
dogs	1

rvosa's programming [62 articles] Export

rvosa's tags