rvosa's rates [91 articles] Export

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	Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection [My Copy] Mol Biol Evol, Vol. 22, No. 5. (1 May 2005), pp. 1208-1222. by Sergei L. Kosakovsky Pond, Simon D. W. Frost posted to substitution-models selection reconstruction rates models methods likelihood estimation bayesian alignment by rvosa on 2009-12-02 16:32:19 as along with 6 people and 1 group druvus operon BioNica Garamonfok marck gjuggler FAB-lab
	Signatures of natural selection are not uniform across genes of innate immune system, but purifying selection is the dominant signature [My Copy] Proceedings of the National Academy of Sciences (9 April 2009) by Souvik Mukherjee, Neeta Sarkar-Roy, Diane K. Wagener, Partha P. Majumder posted to evolution genetics hominidae humans protein rates selection by rvosa on 2009-04-25 01:56:58 as along with 1 person and 1 group jasontsai FAB-lab
	The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages [My Copy] Proceedings of the National Academy of Sciences (7 April 2009) by Yuri I. Wolf, Pavel S. Novichkov, Georgy P. Karev, Eugene V. Koonin, David J. Lipman posted to adaptation amino-acid divergence estimation genetics genome methods models protein rates selection sequence-evolution statistics by rvosa on 2009-04-24 09:19:23 as along with 4 people and 1 group RamuAnandakrishnan deanmalmgren jjray gjuggler FAB-lab
	Mixture models in phylogenetic inference [My Copy] In Statistical and computational challenges in molecular phylogenetics and evolution (28 April 2008) by Mark Pagel posted to bayesian markov-chains methods monte-carlo phylogeny rates substitution-models by rvosa on 2008-08-18 02:27:00 as along with 1 group FAB-lab
	Modelling Heterotachy in Phylogenetic Inference by Reversible-Jump Markov chain Monte Carlo [My Copy] Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, Vol. In review by Mark Pagel, Andrew Meade posted to bayesian markov-chains methods monte-carlo rates substitution-models by rvosa on 2008-08-18 01:50:23 as along with 1 group FAB-lab
	Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751. by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteomics rates ratio-test selection sequence-evolution by rvosa on 2008-08-12 08:00:47 as along with 1 person and 1 group kndiaye FAB-lab
	Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid–cercopithecoid divergence [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 49. (7 December 2004), pp. 17021-17026. by Michael E. Steiper, Nathan M. Young, Tika Y. Sukarna posted to animals cercopithecidae cercopithecinae clock-like dna fossils hominidae mammals primates rates substitution-models by rvosa on 2008-08-12 07:49:38 as along with 1 group FAB-lab
	Forces Shaping the Fastest Evolving Regions in the Human Genome [My Copy] PLoS Genet, Vol. 2, No. 10. (13 October 2006), e168. by Katherine S. Pollard, Sofie R. Salama, Bryan King, et al.Andrew D. Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S. Pedersen, Gill Bejerano, Robert Baertsch, Kate R. Rosenbloom, Jim Kent, David Haussler posted to animals divergence dna evolution genome hominidae humans mammals rates substitution-models by rvosa on 2008-08-12 04:13:37 as along with 6 people and 2 groups balicea sriesenfeld skembel eskay nickluscombe iris42 EBI-regulation FAB-lab
	Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome. [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (April 2006) by L. Arbiza, J. Dopazo, H. Dopazo posted to adaptation animals clock-like comparative data-mining divergence dna genetics genome hominidae humans mammals nuclear ontology phylogenomics primates protein rates ratio-test selection sequence-evolution by rvosa on 2008-08-11 03:11:42 as along with 5 people and 3 groups operon marcius jordibc hdopazo Garamonfok BioinfoCIPF SGU-CIPF FAB-lab
	Molecular evolution of FOXP2, a gene involved in speech and language. [My Copy] Nature, Vol. 418, No. 6900. (22 August 2002), pp. 869-872. by Wolfgang Enard, Molly Przeworski, Simon E. Fisher, et al.Cecilia S. Lai, Victor Wiebe, Takashi Kitano, Anthony P. Monaco, Svante Paabo posted to animals genetics hominidae humans mammals primates rates rodents selection sequence sequence-evolution by rvosa on 2008-08-10 09:57:48 as along with 5 people and 1 group jeremymiller cacalaudi islasli niallhaslam djkt FAB-lab
	Is the population size of a species relevant to its evolution? [My Copy] Evolution Int J Org Evolution, Vol. 55, No. 11. (11 November 2001), pp. 2161-2169. by J. H. Gillespie posted to population-genetics rates selection substitution-models by rvosa on 2008-08-09 21:56:15 as along with 4 people and 1 group haloin aprasad jmeppley bpcusack FAB-lab
	Metabolic rate does not calibrate the molecular clock [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15388-15393. by Robert Lanfear, Jessica A. Thomas, John J. Welch, Thomas Brey, Lindell Bromham posted to clock-like comparative morphometrics rates substitution-models by rvosa on 2008-08-09 21:48:24 as along with 3 people and 2 groups operon Katje Borelli microbiology_nijmegen FAB-lab
	Calculating independent contrasts for the comparative study of substitution rates. [My Copy] Journal of theoretical biology, Vol. 251, No. 4. (21 April 2008), pp. 667-678. by J. J. Welch, D. Waxman posted to comparative contrasts likelihood methods rates substitution-models by rvosa on 2008-08-09 21:42:43 as along with 1 person and 1 group druvus FAB-lab
	Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis [My Copy] Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130. by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier posted to animals clock-like comparative life-history mammals mitochondrial nuclear population-genetics rates substitution-models by rvosa on 2008-08-09 21:35:08 as along with 5 people and 1 group operon aprasad renatomilani smbe2008 stevanspringer FAB-lab
	The rate of DNA evolution: effects of body size and temperature on the molecular clock. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 1. (4 January 2005), pp. 140-145. by J. F. Gillooly, A. P. Allen, G. B. West, J. H. Brown posted to clock-like comparative genome mitochondrial morphometrics nuclear rates substitution-models by rvosa on 2008-08-09 21:12:36 as along with 1 person and 1 group timflutre FAB-lab
	Lineage-specific evolutionary rate in mammalian mtDNA. [My Copy] Molecular biology and evolution, Vol. 17, No. 7. (July 2000), pp. 1022-1031. by C. Gissi, A. Reyes, G. Pesole, C. Saccone posted to animals comparative genome mammals mitochondrial morphometrics rates substitution-models by rvosa on 2008-08-09 21:10:34 as along with 1 group FAB-lab
	Partitioning the variation in mammalian substitution rates. [My Copy] Mol Biol Evol, Vol. 20, No. 1. (January 2003), pp. 10-17. by N. G. Smith, A. Eyre-Walker posted to animals mammals mitochondrial nuclear rates sequence-evolution substitution-models by rvosa on 2008-08-09 21:07:32 as along with 1 person and 1 group mdimmic FAB-lab
	Correlates of substitution rate variation in mammalian protein-coding sequences [My Copy] BMC evolutionary biology, Vol. 8 (19 February 2008), 53. by John J. Welch, Olaf R. P. Bininda-Emonds, Lindell Bromham posted to animals clock-like comparative divergence life-history mammals rates substitution-models by rvosa on 2008-08-09 20:49:43 as along with 1 person and 1 group gjuggler FAB-lab
	Large Punctuational Contribution of Speciation to Evolutionary Divergence at the Molecular Level [My Copy] Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121. by Mark Pagel, Chris Venditti, Andrew Meade posted to clock-like divergence dna evolution phylogeny rates speciation substitution-models by rvosa on 2008-08-09 11:44:50 as along with 5 people and 2 groups vtraag knaseanka brant bpcusack shikin EisenLab FAB-lab
	Rates of DNA sequence evolution differ between taxonomic groups [My Copy] Science, Vol. 231, No. 4744. (21 March 1986), pp. 1393-1398. by R. J. Britten posted to animals clock-like divergence dna humans mammals primates rates sequence-evolution by rvosa on 2008-08-09 07:28:06 as along with 1 person and 1 group katholt FAB-lab
	Rate of Fixation of Nucleotide Substitutions in Evolution [My Copy] Nature, Vol. 224, No. 5215. (11 October 1969), pp. 149-154. by Charles D. Laird, Betty L. Mcconaughy, Brian J. Mccarthy posted to animals clock-like divergence dna evolution hominidae humans mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:30:53 as along with 1 person dhodkinson
	Molecular Evolution in the Descent of Man [My Copy] Nature, Vol. 233, No. 5322. (29 October 1971), pp. 604-613. by Morris Goodman, J. O. H. N. Barnabas, Genji Matsuda, William G. Moore posted to amino-acid clock-like divergence diversification evolution mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:20:56 as
	The role of immunochemical differences in the phyletic development of human behavior. [My Copy] Human biology; an international record of research, Vol. 33 (May 1961), pp. 131-162. by M. Goodman posted to rates sequence-evolution substitution-models by rvosa on 2008-08-09 06:05:11 as
	Fast Genes and Slow Clades: Comparative Rates of Molecular Evolution in Mammals [My Copy] Evolutionary Bioinformatics, Vol. 3 (2007), pp. 59-85. by Olaf R. P. Bininda-Emonds posted to animals clock-like data-mining databases mammals rates sequence-evolution substitution-models supertree by rvosa on 2008-08-08 08:22:08 as
	Detecting the historical signature of key innovations using stochastic models of character evolution and cladogenesis. [My Copy] Evolution; international journal of organic evolution, Vol. 59, No. 2. (February 2005), pp. 257-265. by R. H. Ree posted to adaptation characters comparative diversification evolution methods radiation rates speciation by rvosa on 2008-07-11 19:33:14 as
	Accelerated molecular evolution as a consequence of transitions to mutualism [My Copy] Proceedings of the national academy of sciences, Vol. 94, No. 21. (1997), pp. 11422-11427. by Francois Lutzoni, Mark Pagel posted to bacteria comparative divergence fungi methods rates ratio-test substitution-models by rvosa on 2008-07-11 18:54:57 as along with 1 group FAB-lab
	Estimating Evolutionary Rates in the Primate epsilon-globin Pseudogene [My Copy] (12 August 2004) by Toby Johnson posted to animals likelihood mammals methods primates rates ratio-test software substitution-models vertebrates by rvosa on 2008-02-08 03:13:21 as along with 1 group FAB-lab
	Languages Evolve in Punctuational Bursts [My Copy] Science, Vol. 319, No. 5863. (1 February 2008), 588. by Quentin D. Atkinson, Andrew Meade, Chris Venditti, Simon J. Greenhill, Mark Pagel posted to lexicostatistics rates by rvosa on 2008-02-07 06:19:54 as along with 9 people and 1 group vtraag gjuggler sen_cheng SimonG fintelk junwang4 briordan brant baronka Semantic networks in translation
	Evolutionary divergence and convergence in proteins [My Copy] In Evolving Genes and Proteins (1965), pp. 97-165. by E. Zuckercandl, L. Pauling edited by V. Bryson, H. J. Vogel posted to amino-acid clock-like divergence evolution protein rates by rvosa on 2008-02-07 00:05:53 as
	Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species [My Copy] Systematic Biology, Vol. 52, No. 5. (2003), pp. 705-716. by Z. H. Yang, A. D. Yoder posted to animals bayesian clock-like divergence lemuridae likelihood mammals markov-chains monte-carlo morphology primates rates substitution-models vertebrates by rvosa on 2008-02-07 00:05:52 as
	Molecular Evolution of Cytochrome c Oxidase Subunit IV: Evidence for Positive Selection in Simian Primates [My Copy] Journal of Molecular Evolution, Vol. 44, No. 5. (May 1997), pp. 477-491. by Wei Wu, M. Goodman, Margaret I. Lomax, Lawrence I. Grossman posted to animals dna mammals mitochondrial primates rates selection source-trees substitution-models vertebrates by rvosa on 2008-02-07 00:05:52 as
	Evolution in the slow lane: molecular rates of evolution in sexual and asexual ostracods (Crustacea : Ostracoda) [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 1. (2003), pp. 93-100. by I. Schon, K. Martens, K. Van Doninck, R. K. Butlin posted to animals evolution extinction mitochondrial nuclear rates by rvosa on 2008-02-07 00:05:47 as
	Evolutionary rates of insertion and deletion in noncoding nucleotide sequences of Primates [My Copy] Molecular Biology and Evolution, Vol. 11, No. 3. (1994), pp. 504-512. by N. Saitou, S. Ueda posted to animals mammals primates rates sequence-evolution substitution-models vertebrates by rvosa on 2008-02-07 00:05:45 as
	Rapid cladogenesis in marine fish revisited. [My Copy] Evolution, Vol. 59, No. 5. (2005), pp. 1119-1127. by L. Ruber, Rafael Zardoya posted to animals divergence diversification fishes models rates vertebrates by rvosa on 2008-02-07 00:05:45 as
	Ecological niche differentiation in the Aphelocoma jays: a phylogenetic perspective [My Copy] Biological Journal of the Linnean Society, Vol. 80, No. 3. (2003), pp. 369-383. by N. H. Rice, Martinez E. Meyer, A. T. Peterson posted to behaviour biogeography ecology hybridization mitochondrial rates by rvosa on 2008-02-07 00:05:43 as
	Estimating divergence dates from molecular sequences [My Copy] Molecular Biology and Evolution, Vol. 15, No. 4. (1998), pp. 442-448. by A. Rambaut, L. Bromham posted to animals birds clock-like divergence dna evolution fossils likelihood mammals methods mitochondrial phylogeny rates sequence substitution-models vertebrates by rvosa on 2008-02-07 00:05:43 as
	Estimating times of divergence with a change of rate: The orangutan/African ape divergence [My Copy] Molecular Biology and Evolution, Vol. 15 (1998), pp. 608-610. by D. Penny, Murray R. P. Mcintosh, M. P. Hendy posted to animals divergence mammals primates rates vertebrates by rvosa on 2008-02-07 00:05:42 as
	Analyses of Phylogenetics and Evolution: the ape Package [My Copy] (2003) by E. Paradis, Korbinian Strimmer, J. Claude, Y. Noel, B. Bolker posted to diversification methods models programming rates reconstruction software topology by rvosa on 2008-02-07 00:05:41 as
	Tempo and mode of evolution revealed from molecular phylogenies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89 (1992), pp. 8322-8326. by S. Nee, Arne O. Mooers, P. H. Harvey posted to diversification evolution extinction models rates speciation topology by rvosa on 2008-02-07 00:05:39 as
	Molecular systematics of cowries (Gastropoda : Cypraeidae) and diversification patterns in the tropics [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 3. (2003), pp. 401-459. by C. P. Meyer posted to biogeography classification divergence diversification extinction likelihood mitochondrial morphology phylogeny rates speciation topology by rvosa on 2008-02-07 00:05:37 as
	When do parasites fail to speciate in response to host speciation? [My Copy] Systematic Biology, Vol. 52, No. 1. (2003), pp. 37-47. by K. P. Johnson, R. J. Adams, R. D. M. Page, D. H. Clayton posted to animals birds dna insects invertebrates mitochondrial nuclear parasitism phylogeny population-genetics rates speciation substitution-models topology vertebrates by rvosa on 2008-02-07 00:05:32 as
	Speciation on a conveyor belt: Sequential colonization of the Hawaiian islands by Orsonwelles spiders (Araneae, Linyphiidae) [My Copy] Systematic Biology, Vol. 52, No. 1. (2003), pp. 70-88. by G. Hormiga, M. Arnedo, R. G. Gillespie posted to animals biogeography characters divergence invertebrates parsimony radiation rates speciation by rvosa on 2008-02-07 00:05:31 as
	Molecular and morphological phylogenies of Ruminantia and the alternative position of the Moschidae [My Copy] Systematic Biology, Vol. 52, No. 2. (2003), pp. 206-228. by A. Hassanin, E. J. P. Douzery posted to animals bayesian biogeography classification clock-like divergence diversification mammals mitochondrial nuclear radiation rates vertebrates by rvosa on 2008-02-07 00:05:30 as
	Insulin-like growth factor II intron sequences support the hominoid rate-slowdown hypothesis [My Copy] Molecular Phylogenetics and Evolution, Vol. 2, No. 315-321. (1993) by D. L. Ellsworth, Hewett D. Emmett, W. H. Li posted to animals dna genetics hominidae humans mammals nuclear primates rates substitution-models vertebrates by rvosa on 2008-02-07 00:05:16 as
	Molecular Evidence from the Nuclear Genome for the Time Frame of Human Evolution [My Copy] Journal of Molecular Evolution, Vol. 44(Suppl 1) (1997), pp. S121-S132. by S. Easteal, G. Herbert posted to animals clock-like evolution hominidae humans mammals primates rates sequence substitution-models vertebrates by rvosa on 2008-02-07 00:05:16 as
	Rates of transition and transversion in coding sequences since the human-rodent divergence [My Copy] Genomics, Vol. 20 (1994), pp. 386-396. by D. W. Collins, T. H. Jukes posted to animals mammals primates rates rodents substitution-models vertebrates by rvosa on 2008-02-07 00:05:13 as
	Mutation Pattern Variation Among Regions of the Primate Genome [My Copy] Journal of Molecular Evolution, Vol. 45 (1997), pp. 216-226. by D. Casane, S. Boissinot, Chang, L. C. Shimmin, Wen H. Li posted to animals mammals primates rates regions sequence source-trees vertebrates by rvosa on 2008-02-07 00:05:12 as
	The (super)tree of life: procedures, problems and prospects [My Copy] Annual Review of Ecology and Systematics, No. 33. (2002), pp. 265-289. by Olaf, John L. Gittleman, M. A. Steel posted to adaptation contrasts diversification evolution mammals methods mrp phylogeny plants primates radiation rates supertree by rvosa on 2008-02-07 00:05:08 as
	Molecular timing of primate divergences as estimated by two nonprimate calibration points [My Copy] Journal of Molecular Evolution, Vol. 47 (1998), pp. 718-727. by U. Arnason, A. Gullberg, A. Janke posted to animals divergence evolution hominidae mammals primates rates source-trees vertebrates by rvosa on 2008-02-07 00:05:06 as
	Molecular dates and the mammalian radiation [My Copy] Trends in Ecology & Evolution, Vol. 14, No. 7. (1999), pp. 278-278. by J. D. Archibald posted to animals carnivora divergence mammals radiation rates vertebrates by rvosa on 2008-02-07 00:05:06 as

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animals	606
vertebrates	463
mammals	447
phylogeny	434
primates	422
methods	235
evolution	235
source-trees	125
dna	125
genetics	118
algorithms	116
mitochondrial	105
comparative	103
likelihood	93
rates	91
data-mining	90
substitution-models	90
speciation	89
divergence	85
invertebrates	85
morphology	82
behaviour	80
classification	80
phyloinformatics	80
biodiversity	77
diversification	76
software	76
sequence-evolution	74
humans	73
clock-like	68
insects	68
programming	65
reconstruction	64
encephalization	62
ecology	58
hominidae	58
genome	57
sequence	57
taxonomy	57
fossils	55
selection	55
models	54
bayesian	52
adaptation	51
parsimony	51
topology	49
biogeography	49
nuclear	49
parasitism	49
databases	48
dbhack1	48
protein	46
supertree	45
characters	42
sociality	40
phylogenomics	37
plants	36
sexual	36
amino-acid	33
inference	32
xml	32
markov-chains	32
monte-carlo	31
morphometrics	31
anthropology	31
extinction	29
bacteria	29
population-genetics	29
life-history	28
mrp	28
nexml	27
alignment	27
contrasts	25
ratio-test	25
karyotyping	20
population	20
lemuridae	20
radiation	20
ontology	19
simulation	19
strepsirrhines	18
rodents	18
conservation	17
statistics	16
birds	16
specialization	14
hybridization	13
viruses	13
predation	12
polymorphism	12
fungi	12
colobinae	12
homology	12
weighting	12
rna	12
networks	12
vision	11
carnivora	11
cebidae	10
graph	10
restriction	10
phenetics	9
platyrrhines	9
fishes	9
recombination	9
estimation	8
polymerase-chain-reaction	8
chiroptera	8
proteomics	7
mice	7
lexicostatistics	7
competition	7
cercopithecidae	6
regions	6
lizards	6
metabolomics	5
alcids	5
variability	5
cercopithecinae	5
cells	4
cheirogaleidae	4
rats	4
graphics	4
catarrhines	4
sine	3
haplorhini	3
cetartiodactyla	2
hylobates	2
tarsiidae	2
dogs	1
nucleic	1
philosophy	1
line	1
shrews	1
fingerprinting	1
songbirds	1
microarray	1
cattle	1

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