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Reply: On the value of haplotype-based genotype–phenotype analysis and on data transformation in pharmacogenetics and -genomicsby: David J. Balding
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AbstractI welcome the comments of Vormfelde and Brockmöller, which I do not view as entirely contradicting me but as going further than I had space to do in my introductory article. However, I would like to put forward several caveats on their observations. Haplotype analyses can often convey advantages over analysing one SNP at a time, particularly when, as I noted on page 787 of my Review1, there are multiple, tightly linked functional variants acting in cis.
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