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	Structure and evolution of online social networks [My Copy] In KDD '06: Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining (2006), pp. 611-617. by Ravi Kumar, Jasmine Novak, Andrew Tomkins posted to social_networks networks model_based growth_models by saket on 2009-12-03 15:51:04 as along with 44 people and 6 groups 07111013 Iully meikipp thegoose andreacapocci pms dexter_shen pkusjcer yiah aalves bomi apepe adeenaa kerriciminera agulli A_Olympia rickl elsantosneto ladamic dartar donade styliani senioritis krisl merazzle zpinhead azygmunt manu_ds sjones mook3000 abl mylit rcrane yihsuan cursonivel1 dneal xingxu jac191 katja lcaroso cauimkrao rezaferry rrbarb tnhh Philosophy_of_Information Blog_and_Wiki_Research AGH-IISG cursonivel1 Networked Systems Lab Social Web
	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted to survey networks modules functional_modules function_prediction clusterings by saket on 2009-10-03 07:37:28 as along with 5 people and 1 group jperkins TRHvidsten grahamc jsuchit carlk Orengo Group Journal Picks
	Portraits of Complex Networks [My Copy] (28 Feb 2008) by J. P. Bagrow, E. M. Bollt, J. D. Skufca, D. ben-Avraham posted to visualization networks by saket on 2009-09-21 03:10:23 as along with 2 people jaspervoskuilen carlk
	Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (27 November 2004), 51. by Johannes Berg, Michael Lassig, Andreas Wagner posted to evolution model_based networks time_machine by saket on 2009-08-06 17:39:44 as along with 8 people sergiun chica kaarsinogen diamantis phoenixzxl j3xucite timflutre iris_2001
	Evolution and dynamics of protein interactions and networks [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 349-357. by E. Levy, J. Pereiraleal posted to evolution modules networks time_machine by saket on 2009-08-04 22:08:23 as along with 8 people chica carlk paolomarcatili guhjy neils cabbagesofdoom marck zdai
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to compression modules networks summarize by saket on 2009-08-04 22:02:47 as along with 24 people and 2 groups colmryan carlk diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Mycology OPIG
	Comparison of protein interaction networks reveals species conservation and divergence [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 October 2006), 457. by Zhi Liang, Meng Xu, Maikun Teng, Liwen Niu posted to conserved_modules evolution networks time_machine by saket on 2009-08-04 19:36:58 as along with 7 people and 1 group thegoose thegoose2 tharris balajis biehl cerca carlk C. elegans / WormBase
	Detection of functional modules from protein interaction networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 54, No. 1. (1 January 2004), pp. 49-57. by Jose B. Pereira-Leal, Anton J. Enright, Christos A. Ouzounis posted to modules networks by saket on 2009-07-15 22:38:03 as along with 4 people carlk ujh opheliav wnpx
	Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 926-932. by Geraldine Del Mondo, Damien Eveillard, Irena Rusu posted to clusterings intra_modules modules networks by saket on 2009-05-14 21:03:07 as along with 3 people dpsuslo8 kintoki phoenixzxl
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to function_prediction microarray modules networks by saket on 2009-05-06 16:23:18 as along with 4 people jfr yaredo tmmurali phoenixzxl
	Summarizing Multiple Gene Trees Using Cluster Networks [My Copy] In WABI '08: Proceedings of the 8th international workshop on Algorithms in Bioinformatics (2008), pp. 296-305. by Daniel H. Huson, Regula Rupp posted to dag networks summarize trees by saket on 2009-04-21 04:13:58 as
	Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length [My Copy] Journal of Computational Biology, Vol. 14, No. 6. (2007), pp. 817-838. by Benny Chor, Tamir Tuller posted to compression evolution networks time_machine by saket on 2009-02-16 15:20:35 as along with 2 people carlk jiny
	From the Cover: The network of sequence flow between protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 28. (10 July 2007), pp. 11627-11632. by Leonid Meyerguz, Jon Kleinberg, Ron Elber posted to networks protein_structure by saket on 2008-11-27 03:15:12 as along with 2 people carlk j3xucite
	Social Insect Networks [My Copy] Science, Vol. 301, No. 5641. (26 September 2003), pp. 1867-1870. by Jennifer H. Fewell posted to evolutionary_biology networks social_animals by saket on 2008-11-26 21:04:31 as along with 3 people jbsaltz lshaw artur
	Evidence for dynamically organized modularity in the yeast protein\|[ndash]\|protein interaction network [My Copy] Nature, Vol. 430, No. 6995. (09 June 2004), pp. 88-93. by Jing-Dong J. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. M. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted to microarray modules networks by saket on 2008-11-24 19:01:09 as along with 31 people and 2 groups aceol daveGerrard colmryan mgomes lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
	Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking [My Copy] Research in Computational Molecular Biology (2007), pp. 92-106. by Joshua Grochow, Manolis Kellis posted to motifs networks by saket on 2008-11-18 02:51:48 as along with 4 people nurban mjoach tmmurali carlk
	Identification of functional modules from conserved ancestral protein protein interactions [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i149-158. by J. Dutkowski, J. Tiuryn posted to boolean_networks complexes evolution modules networks software time_machine by saket on 2008-11-14 20:06:09 as along with 2 people grahamc Pao-Yang
	Systematic discovery of functional modules and context-specific functional annotation of human genome. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i222-229. by Yu Huang, Haifeng Li, Haiyan Hu, et al.Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong J. Zhou posted to algorithms evolution function_prediction microarray modules motifs networks random_walks by saket on 2008-11-14 19:32:38 as along with 7 people meanerelk ptrobajo Borelli carlk jeremymiller cswinburne cabbagezs
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to evolution fly microarray modules networks worm yeast by saket on 2008-11-14 19:08:09 as along with 25 people and 7 groups icecrown sficklin roys thegoose2 cswinburne carlk pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 96. by King I. Jordan, Lee Katz, Dee Denver, Todd J. Streelman posted to evolution microarray networks by saket on 2008-11-14 18:18:44 as along with 1 person lskatz
	Revisiting ldquoscale-freerdquo networks [My Copy] BioEssays, Vol. 27, No. 10. (October 2005), pp. 1060-1068. by E. F. Keller posted to networks small_world by saket on 2008-11-14 18:13:06 as along with 13 people and 5 groups zufar panisson A_Olympia AbnerCYH dartar dpf cmmorel yish yoh merazzle andreacapocci jmarcelino thecolourblue logics of knowledge mathgamespatterns dtl vds-arg eni
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to algorithms core_attachment function_prediction gene_ontology microarray modules networks overlapping_modules by saket on 2008-11-12 21:49:46 as along with 7 people dolchan jfr diamantis imina renatomilani lptolik jonesn
	Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 472. by Tao Xu, Linfang Du, Yan Zhou posted to gene_ontology microarray modules networks by saket on 2008-11-12 21:35:49 as along with 7 people Borsti MarcoAlvarez sgoetz cgaugain kshameer barriot phoenixzxl
	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2608-2614. by Ta-Tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost posted to microarray ml networks ppi_prediction by saket on 2008-11-12 21:08:25 as along with 12 people jperkins kiekyon jfr cgaugain guhjy iris_2001 pengchy natstreet grahamc phoenixzxl neils renatomilani
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted to evolution modularity networks by saket on 2008-11-04 18:14:52 as along with 22 people and 7 groups karthikraman roys rsantana vtraag anphony ocs mcphee marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk Modularity in evolutionary algorithms MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to complexes core_attachment modularity networks by saket on 2008-11-04 17:48:37 as along with 31 people and 10 groups aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps [My Copy] Bioinformatics, No. 21. (June 2005), pp. 302-310. by Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh posted to algorithms function_prediction lp networks by saket on 2008-06-01 04:11:50 as
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by P. M. Kim, L. J. Lu, Y. Xia, M. B. Gerstein posted to domains evolution networks protein_structure by saket on 2008-06-01 04:08:10 as along with 24 people and 2 groups daveGerrard ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili structural_bioinformatics kdl
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia S. Guimaraes, Raja Jothi, Elena Zotenko, Teresa M. Przytycka posted to ddi domains lp networks ppi_prediction by saket on 2008-06-01 04:06:30 as along with 6 people dfdong qluo marti cerca phoenixzxl carlk
	Reuse of structural domain-domain interactions in protein networks [My Copy] BMC Bioinformatics, Vol. 8 (18 July 2007), 259. by Benjamin Schuster-Bockler, Alex Bateman posted to ddi domains networks ppi_prediction by saket on 2008-06-01 04:05:16 as along with 2 people zwang carlk
	The small-world phenomenon: an algorithm perspective [My Copy] In STOC '00: Proceedings of the thirty-second annual ACM symposium on Theory of computing (2000), pp. 163-170. by Jon Kleinberg posted to algorithms networks small_world by saket on 2008-06-01 04:03:59 as along with 11 people and 1 group jabl matteodellamico AbnerCYH muraken jaspervoskuilen emersonmello ransombriggs dstrelau gvdh carlk chibatching GCSeg
	Evolutionary dynamics on graphs [My Copy] Nature, Vol. 433, No. 7023. (20 January 2005), pp. 312-316. by Erez Lieberman, Christoph Hauert, Martin A. Nowak posted to evolutionary_biology game_theory networks by saket on 2008-06-01 04:03:25 as along with 19 people and 5 groups cosmizer halukbingol anarinsk vtraag qwermish mague bpb Borelli shivakumar3_14 cmm pbellec kehan zono jaspervoskuilen timflutre marcusfrean tomrevilla balicea davidchavalarias Soslab biodiversity_conservation Bioinformatics FAB-lab GrassBase
	Graphs over time: densification laws, shrinking diameters and possible explanations [My Copy] In KDD '05: Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining (2005), pp. 177-187. by Jure Leskovec, Jon Kleinberg, Christos Faloutsos posted to evolution networks by saket on 2008-06-01 04:00:50 as along with 14 people and 2 groups HenryR A_Olympia ChaTo scis0000001 bigbossman griota somasanyal flavian_vasile PaulBHartzog koles mpotamias theus styliani balicea Philosophy_of_Information Blog_and_Wiki_Research
	Many Random Walks Are Faster Than One [My Copy] (20 Nov 2007) by Noga Alon, Chen Avin, Michal Koucky, Gady Kozma, Zvi Lotker, Mark R. Tuttle posted to algorithms cover_time networks random_walks by saket on 2008-06-01 02:07:44 as
	Cost-effective outbreak detection in networks [My Copy] In KDD '07: Proceedings of the 13th ACM SIGKDD international conference on Knowledge discovery and data mining (2007), pp. 420-429. by Jure Leskovec, Andreas Krause, Carlos Guestrin, Christos Faloutsos, Jeanne Vanbriesen, Natalie Glance posted to algorithms blogs diffusion networks by saket on 2008-06-01 02:06:43 as along with 5 people andreacapocci krisl kubyaddi ladamic domakesaythink

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