samal's library 37 articles Export

	The statistical significance of nucleotide position-weight matrix matches [My Copy] Comput. Appl. Biosci., Vol. 12, No. 5. (1 October 1996), pp. 431-439. by Jean-Michel Claverie, Stephane Audic posted to algorithm bioinformatics matrix statistics by samal on 2006-09-10 03:27:32 as along with 2 people and 2 groups bsmagic neils Bioinformatics bioinplant
	On counting position weight matrix matches in a sequence, with application to discriminative motif finding. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by S. Sinha posted to motif pattern prediction sequence by samal on 2006-08-31 16:09:20 as along with 3 people wowalz eckart_bindewald xili03
	Semi-supervised clustering by seeding [My Copy] (2002) by S. Basu, A. Banerjee, R. Mooney posted to clustering em semisupervised by samal on 2006-08-22 15:05:33 as along with 4 people sona anon_pl jread82 nklee
	Feature Weighting in <i>k</i>-Means Clustering [My Copy] Mach. Learn., Vol. 52, No. 3. (September 2003), pp. 217-237. by Dharmendra S. Modha, Scott W. Spangler posted to clustering feature selection unsupervised by samal on 2006-08-22 07:50:44 as along with 1 person alexhofmann
	Simultaneous Feature Selection and Clustering Using Mixture Models [My Copy] by Martin H. C. Law, Mario A. T. Figueiredo, Anil K. Jain posted to clustering feature filter selection unsupervised by samal on 2006-08-22 07:32:02 as along with 2 people luispedro alexhofmann
	A New Conceptual Clustering Framework [My Copy] Machine Learning, Vol. 56, No. 1. (21 July 2004), pp. 115-151. by Nina Mishra, Dana Ron, Ram Swaminathan posted to clustering by samal on 2006-08-22 07:31:33 as along with 2 people renatocarmo kazuyah
	A unified framework for model-based clustering [My Copy] (2002) by S. Zhong, J. Ghosh posted to clustering deterministic_annealing by samal on 2006-08-22 07:30:13 as along with 2 people anon_pl lfdoherty
	Mining frequent stem patterns from unaligned RNA sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 20. (15 October 2006), pp. 2480-2487. by M. Hamada, K. Tsuda, T. Kudo, T. Kin, K. Asai posted to clustering motif ncrna structure by samal on 2006-08-22 07:28:40 as along with 6 people and 3 groups timhubbard marcius tardigrade andersbj dquest plofje microRNA BioinfoCIPF SGU-CIPF
	Defining the sequence-recognition profile of DNA-binding molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 4. (24 January 2006), pp. 867-872. by Christopher L. Warren, Natasha C. S. Kratochvil, Karl E. Hauschild, et al.Shane Foister, Mary L. Brezinski, Peter B. Dervan, George N. Phillips, Aseem Z. Ansari posted to array binding factor selex transcription by samal on 2006-08-22 07:09:36 as along with 5 people and 1 group absterga indigoviolet emilyhare stsaft blobbybirdman EisenLab
	Integrated Assessment and Prediction of Transcription Factor Binding [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e70. by Andreas Beyer, Christopher Workman, Jens Hollunder, et al.Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker posted to prediction target tf transcription by samal on 2006-08-22 07:03:55 as along with 10 people and 1 group vingron HawkinsJohnC ajbattle nklee jfr balajis wnpx emilyhare reidy Ao_Li2007 EisenLab
	Linking DNA-binding proteins to their recognition sequences by using protein microarrays. [My Copy] Proc Natl Acad Sci U S A (19 June 2006) by Su-Wen W. Ho, Ghil Jona, Christina T L T. Chen, Mark Johnston, Michael Snyder posted to array protein transcription by samal on 2006-08-22 07:00:23 as along with 4 people and 3 groups emilyhare nickluscombe kengg koller EisenLab EBI-regulation Plantandetc
	The design of transcription-factor binding sites is affected by combinatorial regulation. [My Copy] Genome Biol, Vol. 6, No. 12. (2005) by Y. Bilu, N. Barkai posted to binding cooperativity factor factors grammar regulation site sites transcription yeast by samal on 2006-08-22 06:39:12 as along with 7 people and 1 group chrn dpollard tabu adepace lewbin nklee xili03 EisenLab
	Statistical Methods in Bioinformatics : An Introduction (Statistics for Biology and Health) [My Copy] (05 March 2006) by Warren J. Ewens, Gregory Grant posted to lab_library methods population_genetics by samal on 2006-08-22 05:27:41 as along with 4 people and 1 group dpollard wnpx hpiwowar echinotrix EisenLab
	PLoS Biology: Plasticity of the cis-Regulatory Input Function of a Gene [My Copy] posted to bacteria evolution expression gene mutation placticity promoter regulation transcription_factor by samal on 2006-08-22 05:25:15 as along with 2 people and 1 group dpollard brixtonmc EisenLab
	Periodicity of SNP distribution around transcription start sites. [My Copy] BMC Genomics, Vol. 7, No. 1. (3 April 2006) by Koichiro Higasa, Kenshi Hayashi posted to chimp human nucleosome promoter snps transcription by samal on 2006-08-22 05:24:28 as along with 1 person and 1 group dpollard EisenLab
	A survey of motif discovery methods in an integrated framework [My Copy] Biology Direct, Vol. 1, No. 1. (06 April 2006), 11. by Geir K. Sandve, Finn Drabløs posted to discovery motif review by samal on 2006-08-22 05:19:48 as along with 11 people and 1 group tomhebbron Scis0000002 maximilianh wowalz AbnerCYH aprasad dpollard yevishere csdhwang idonaldson yoonk EisenLab
	Close sequence comparisons are sufficient to identify human cis-regulatory elements. [My Copy] Genome Res (12 June 2006) by Shyam Prabhakar, Francis Poulin, Malak Shoukry, et al.Veena Afzal, Edward M M. Rubin, Olivier Couronne, Len A A. Pennacchio posted to alignment annotation conserved constraint evolution footprinting human mammal mammals prediction rate selection tfbs transcription turnover by samal on 2006-08-22 05:18:32 as along with 8 people and 2 groups indigoviolet dpollard nickluscombe olympos emptyhb bpcusack mariakmejia kcrawlik EisenLab EBI-regulation
	Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations. [My Copy] J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945. by S. Gunewardena, P. Jeavons, Z. Zhang posted to binding motif prediction structure transcription by samal on 2006-08-20 12:01:00 as along with 2 people and 1 group dpollard nklee EisenLab
	Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. [My Copy] Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343. by P. C. Boutros, A. B. Okey posted to clustering microarray by samal on 2006-08-16 18:31:06 as along with 10 people tonamswish bozdagd jfr metamerist tabu srfairclough akastrin xili03 bertelsen renatomilani
	Network structures and algorithms in Bioconductor [My Copy] Bioinformatics, Vol. 21, No. 1., 135. by Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman posted to network oconductor by samal on 2006-08-16 18:30:10 as along with 1 person tabu
	Functional genomic hypothesis generation and experimentation by a robot scientist [My Copy] Nature, Vol. 427, No. 6971. (15 January 2004), pp. 247-252. by Ross D. King, Kenneth E. Whelan, Ffion M. Jones, et al.Philip G. K. Reiser, Christopher H. Bryant, Stephen H. Muggleton, Douglas B. Kell, Stephen G. Oliver posted to automation biological design experimental for literature-based-discovery robot scientist systems by samal on 2006-08-16 18:28:18 as along with 12 people and 5 groups jdu abhishek_tiwari coela zhenyisx srp33 dbk tmmurali yas jtbates tabu dullhunk JeremyZucker streptomyces dbk-lab T_lab triplehelix MetabolicModeling
	Genome-wide analysis of mammalian promoter architecture and evolution. [My Copy] Nature genetics, Vol. 38, No. 6. (28 June 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. Semple, Martin S. Taylor, Pär G. Engström, Martin C. Frith, Alistair R. Forrest, Wynand B. Alkema, Sin Lam L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted to cage comparative-analysis genome human mammals motif promoter transcription by samal on 2006-08-11 16:01:51 as along with 19 people and 4 groups rsaito guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 nklee djkt jfr xwbcn dchughes tabu nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
	Generalized Nonparametric Mixed-Effect Models: Computation and Smoothing Parameter Selection [My Copy] Journal of Computational & Graphical Statistics, Vol. 14, No. 2. (June 2005), pp. 485-504. by Chong Gu, Ping Ma posted to mixed-effect models nonparametric by samal on 2006-08-11 10:02:38 as along with 2 people gagliol jclau
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to bivoc chip genomics network networks thesis transcriptional_regulation yeast by samal on 2006-08-11 09:59:21 as along with 32 people and 2 groups viren4388 mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	Degeneracy and complexity in biological systems. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 24. (20 November 2001), pp. 13763-13768. by G. M. Edelman, J. A. Gally posted to coding complexity genevariation networks by samal on 2006-08-11 09:58:20 as along with 3 people sugarexpletive snuppepuppan bayesian
	Locally Efficient Semiparametric Estimators for Generalized Skew-Elliptical Distributions [My Copy] Journal of the American Statistical Association, Vol. 100, No. 471. (September 2005), pp. 980-989. by Yanyuan Ma, Marc G. Genton, Anastasios A. Tsiatis posted to skew-elliptical by samal on 2006-08-11 09:54:08 as
	Studying complex biological systems using multifactorial perturbation. [My Copy] Nat Rev Genet, Vol. 4, No. 2. (February 2003), pp. 145-151. by R. C. Jansen posted to biological complex multifactorial perturbation studying systems using by samal on 2006-08-11 09:51:23 as along with 5 people snuppepuppan tmmurali jfr qfwills phoenixzxl
	Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease [My Copy] Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 243-253. by Norbert Hubner, Caroline A. Wallace, Heike Zimdahl, et al.Enrico Petretto, Herbert Schulz, Fiona Maciver, Michael Mueller, Oliver Hummel, Jan Monti, Vaclav Zidek, Alena Musilova, Vladimir Kren, Helen Causton, Laurence Game, Gabriele Born, Sabine Schmidt, Anita Muller, Stuart A. Cook, Theodore W. Kurtz, John Whittaker, Michal Pravenec, Timothy J. Aitman posted to medicine mesophysics pags sease by samal on 2006-08-11 09:50:19 as along with 8 people ajbattle cscweb snuppepuppan kentsis neveaire caseybrown thomaskelder jo_davies
	Robustness as a measure of plausibility in models of biochemical networks. [My Copy] J Theor Biol, Vol. 216, No. 1. (7 May 2002), pp. 19-30. by M. Morohashi, A. E. Winn, M. T. Borisuk, H. Bolouri, J. Doyle, H. Kitano posted to networks robustness by samal on 2006-08-11 09:49:43 as along with 3 people and 1 group camster snuppepuppan monod dbk-lab
	Noise Propagation in Gene Networks [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969. by Juan M. Pedraza, Alexander van Oudenaarden posted to avano_lab expression gene genecircuits geneticnetworks genevariation networks noise stochastic syntheticbiology by samal on 2006-08-11 09:49:05 as along with 17 people balabu boko4ikameto winterschlaefer cjryan jimeet rklancer snuppepuppan JKelly555 madhadron jiyu mhucka timflutre margaritis brianb suizan jiny dylanwalker
	An architecture for biological information extraction and representation. [My Copy] Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 430-438. by A. Vailaya, P. Bluvas, R. Kincaid, A. Kuchinsky, M. Creech, A. Adler posted to abstracts bib bio ie information-extraction nlp textmining by samal on 2006-08-11 09:43:53 as along with 4 people and 2 groups lh49 snuppepuppan irenas yas dbk-lab T_lab
	A probabilistic view of gene function. [My Copy] Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564. by A. G. Fraser, E. M. Marcotte posted to bio bioinformatics gene gene-function networks probabilistic textmining by samal on 2006-08-11 09:27:44 as along with 10 people and 1 group bertelsen snuppepuppan ziquje lfriedl opheliav wnpx grahamc massivemayhem bootsy vietanh0 kdl
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted to collins collins_lab development evolution expression gene gene-expression gene_expression molecular-signaling morphogenesis networks noise regulation regulatory-cascades transcription transcriptional_regulation by samal on 2006-08-11 09:14:59 as along with 18 people and 2 groups genocad bertelsen Scis0000002 raik rklancer snuppepuppan guhjy okarsligil bayesian balicea madhadron balabu johncumbers mmt proulx dbikard nklee tmmurali Bioinformatics SynBioSys
	Integration of text- and data-mining using ontologies successfully selects disease gene candidates [My Copy] Nucl. Acids Res., Vol. 33, No. 5. (14 March 2005), pp. 1544-1552. by Nicki Tiffin, Janet F. Kelso, Alan R. Powell, Hong Pan, Vladimir B. Bajic, Winston A. Hide posted to disease findingtargets by samal on 2006-08-11 09:08:28 as along with 3 people carelcad snuppepuppan craigtalbert
	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. [My Copy] American journal of human genetics, Vol. 78, No. 6. (June 2006), pp. 1011-1025. by L. Franke, H. van Bakel, L. Fokkens, E. D. de Jong, M. Egmont-Petersen, C. Wijmenga posted to bio findingtargets human nettwork networks pathway by samal on 2006-08-11 09:07:06 as along with 10 people and 1 group eesruiz saket agonzale jfr snuppepuppan guhjy lfriedl tabu mmt raiyar kdl
	Unknown [My Copy] by Skew posted to skew-elliptical by samal on 2006-01-17 08:50:49 as
	Generalized Skew-Elliptical Distributions [My Copy] by And T. Quadratic posted to no-tag by samal on 2006-01-17 08:40:29 as

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transcription	9
clustering	7
networks	7
motif	5
gene	4
human	4
prediction	4
binding	3
bio	3
evolution	3
expression	3
promoter	3
regulation	3
selection	3
array	2
bioinformatics	2
biological	2
factor	2
feature	2
findingtargets	2
genevariation	2
mammals	2
network	2
noise	2
skew-elliptical	2
structure	2
systems	2
textmining	2
transcriptional_regulation	2
unsupervised	2
yeast	2
abstracts	1
algorithm	1
alignment	1
annotation	1
automation	1
avano_lab	1
bacteria	1
bib	1
bivoc	1
cage	1
chimp	1
chip	1
coding	1
collins	1
collins_lab	1
comparative-analysis	1
complex	1
complexity	1
conserved	1
constraint	1
cooperativity	1
design	1
deterministic_annealing	1
development	1
discovery	1
disease	1
em	1
experimental	1
factors	1
filter	1
footprinting	1
for	1
genecircuits	1
gene_expression	1
gene-expression	1
gene-function	1
geneticnetworks	1
genome	1
genomics	1
grammar	1
ie	1
information-extraction	1
lab_library	1
literature-based-discovery	1
mammal	1
matrix	1
medicine	1
mesophysics	1
methods	1
microarray	1
mixed-effect	1
models	1
molecular-signaling	1
morphogenesis	1
multifactorial	1
mutation	1
ncrna	1
nettwork	1
nlp	1
nonparametric	1
nucleosome	1
oconductor	1
pags	1
pathway	1
pattern	1
perturbation	1
placticity	1
population_genetics	1
probabilistic	1
protein	1
rate	1
regulatory-cascades	1
review	1
robot	1
robustness	1
scientist	1
sease	1
selex	1
semisupervised	1
sequence	1
site	1
sites	1
snps	1
statistics	1
stochastic	1
studying	1
syntheticbiology	1
target	1
tf	1
tfbs	1
thesis	1
transcription_factor	1
turnover	1
using	1

samal's library 37 articles Export

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