sameersoi's library 193 articles Export

	Fine-Scale Phylogenetic Discordance across the House Mouse Genome [My Copy] PLoS Genet, Vol. 5, No. 11. (20 November 2009), e1000729. by Michael A. White, Cécile Ané, Colin N. Dewey, Bret R. Larget, Bret A. Payseur posted to statistics population_genetics evolution by sameersoi on 2009-11-20 22:39:21 as along with 1 person bpcusack
	Solving the Fisher-Wright and Coalescence Problems with a Discrete Markov Chain Analysis [My Copy] Advances in Applied Probability, Vol. 36, No. 4. (2004), pp. 1175-1197. by Samuel R. Buss, Peter Clote posted to statistics population_genetics by sameersoi on 2009-11-20 04:18:18 as
	A genealogical interpretation of principal components analysis. [My Copy] PLoS genetics, Vol. 5, No. 10. (16 October 2009), e1000686. by Gil McVean posted to statistics population_genetics by sameersoi on 2009-11-19 05:46:44 as along with 6 people and 1 group engelhardt djkt bpcusack Geknitics reyez lp2 Journal picks
	The population genetics of structural variation. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Donald F. Conrad, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-11-18 12:50:08 as along with 5 people APRegier guhjy mrkrause rdiaz jlangdon
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to sequencing by sameersoi on 2009-11-12 21:57:48 as along with 41 people and 3 groups Geknitics cthachuk hzoltan chvlyl hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-11-12 21:57:35 as along with 41 people and 7 groups lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans. [My Copy] Nature genetics, Vol. 41, No. 7. (July 2009), pp. 849-853. by Feng Zhang, Mehrdad Khajavi, Anne M. Connolly, Charles F. Towne, Sat Dev D. Batish, James R. Lupski posted to cnv by sameersoi on 2009-11-11 07:36:35 as along with 2 people dbikard fenghezi
	A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation [My Copy] PLoS Genet, Vol. 5, No. 1. (30 January 2009), e1000327. by P. J. Hastings, Grzegorz Ira, James R. Lupski posted to evolution cnv by sameersoi on 2009-11-11 06:07:39 as along with 3 people ahornby jdbowes djkt
	The dynamics of adaptation on correlated fitness landscapes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18638-18643. by Sergey Kryazhimskiy, GaÅ¡per TkaÄik, Joshua B. Plotkin posted to population_genetics evolution by sameersoi on 2009-11-05 17:53:27 as along with 5 people bpcusack tkeitt zwang inquil samubernard
	Experimental determination of the evolvability of a transcription factor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 44. (3 November 2009), pp. 18650-18655. by Sebastian J. Maerkl, Stephen R. Quake posted to evolution by sameersoi on 2009-11-05 17:49:37 as along with 4 people kintoki emptyhb aalibes bpcusack
	Defensins and the dynamic genome: what we can learn from structural variation at human chromosome band 8p23.1. [My Copy] Genome research, Vol. 18, No. 11. (November 2008), pp. 1686-1697. by Edward J. Hollox, John C. Barber, Anthony J. Brookes, John A. Armour posted to human_adaptation evolution cnv by sameersoi on 2009-11-04 05:54:43 as
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to statistics sequencing cnv by sameersoi on 2009-11-03 16:15:29 as along with 17 people and 2 groups seb1 pst owenlancaster robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai heliopais druvus GeeSharpMinor Peiyong n00c gdv desany qayub Orengo Group Journal Picks Journal picks
	Rapid identification of homologous recombinants and determination of gene copy number with reference/query pyrosequencing (RQPS) [My Copy] Genome Research, Vol. 19, No. 11. (November 2009), pp. 2081-2089. by Zhenyi Liu, Anna C. Obenauf, Michael R. Speicher, Raphael Kopan posted to sequencing cnv by sameersoi on 2009-11-02 19:37:05 as
	Phylogenetic MCMC algorithms are misleading on mixtures of trees. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5744. (30 September 2005), pp. 2207-2209. by Elchanan Mossel, Eric Vigoda posted to statistics population_genetics evolution by sameersoi on 2009-10-28 07:33:39 as along with 2 people and 1 group aprasad rvosa FAB-lab
	Targeted Interrogation of Copy Number Variation using SCIMMkit. [My Copy] Bioinformatics (Oxford, England) (21 October 2009), btp606. by Troy Zerr, Gregory M. Cooper, Evan E. Eichler, Deborah A. Nickerson posted to population_genetics cnv by sameersoi on 2009-10-26 00:37:23 as along with 2 people and 1 group leemachado ppgardne Journal picks
	Measures of variation at DNA repeat loci under a general stepwise mutation model. [My Copy] Theoretical population biology, Vol. 50, No. 3. (December 1996), pp. 345-367. by M. Kimmel, R. Chakraborty posted to statistics population_genetics by sameersoi on 2009-10-15 05:14:25 as along with 2 people Dannycoutinho druvus
	Statistics for microsatellite variation based on coalescence. [My Copy] Theoretical population biology, Vol. 50, No. 3. (December 1996), pp. 325-344. by J. K. Pritchard, M. W. Feldman posted to statistics population_genetics by sameersoi on 2009-10-14 23:31:48 as along with 1 person druvus
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-10-12 18:55:56 as along with 20 people and 1 group Zephyrus gthorisson vplagnol biovils psique chvlyl daed daforerog zufar jessopher DrRichardBadge operon colinveal frohike sf11 polivares dswan qayub bpcusack rdiaz Journal picks
	Gene tree discordance, phylogenetic inference and the multispecies coalescent. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 6. (21 June 2009), pp. 332-340. by James H. Degnan, Noah A. Rosenberg posted to statistics population_genetics evolution by sameersoi on 2009-10-05 22:39:20 as along with 4 people parnell druvus aprasad skembel
	Efficient approximations for learning phylogenetic HMM models from data. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004) by Vladimir Jojic, Nebojsa Jojic, Chris Meek, et al.Dan Geiger, Adam Siepel, David Haussler, D. Heckerman posted to statistics population_genetics by sameersoi on 2009-10-02 20:10:02 as
	Inference of locus-specific ancestry in closely related populations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i213-221. by Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin posted to statistics population_genetics association by sameersoi on 2009-09-28 20:50:41 as
	Methods for High-Density Admixture Mapping of Disease Genes [My Copy] The American Journal of Human Genetics, Vol. 74, No. 5. (May 2004), pp. 979-1000. by N. Patterson, N. Hattangadi, B. Lane, et al.K. Lohmueller, D. Hafler, J. Oksenberg, S. Hauser, M. Smith, S. Obrien, D. Altshuler posted to population_genetics association by sameersoi on 2009-09-28 20:49:45 as along with 3 people ilyashl sriram_s jjannink
	Estimating Local Ancestry in Admixed Populations [My Copy] The American Journal of Human Genetics, Vol. 82, No. 2. (08 February 2008), pp. 290-303. by Sriram Sankararaman, Srinath Sridhar, Gad Kimmel, Eran Halperin posted to statistics population_genetics association by sameersoi on 2009-09-28 19:59:10 as
	On the inference of ancestries in admixed populations [My Copy] Genome Research, Vol. 18, No. 4. (1 April 2008), pp. 668-675. by Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan posted to statistics population_genetics association by sameersoi on 2009-09-28 19:53:40 as along with 2 people renewang gracio
	Detecting Homogeneous Segments in DNA Sequences by Using Hidden Markov Models [My Copy] Journal of the Royal Statistical Society. Series C (Applied Statistics), Vol. 49, No. 2. (2000), pp. 269-285. by Richard J. Boys, Daniel A. Henderson, Darren J. Wilkinson posted to statistics population_genetics evolution by sameersoi on 2009-09-27 22:12:12 as along with 1 person coldmeadow
	Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model [My Copy] PLoS Genet, Vol. 3, No. 2. (23 February 2007), e7. by Asger Hobolth, Ole F. Christensen, Thomas Mailund, Mikkel H. Schierup posted to statistics population_genetics evolution by sameersoi on 2009-09-27 22:10:40 as along with 10 people and 1 group aprasad timflutre jdbowes usagi-kirin nurban nosada17 berthoums kourai mailund lh3 Durbin group
	Phylogenetic inference under recombination using Bayesian stochastic topology selection. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 197-203. by Alex Webb, John M. Hancock, Chris C. Holmes posted to statistics population_genetics evolution by sameersoi on 2009-09-27 22:10:06 as along with 2 people aprasad bertrandservin
	Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16057-16062. by Michael DeGiorgio, Mattias Jakobsson, Noah A. Rosenberg posted to statistics population_genetics human_adaptation evolution by sameersoi on 2009-09-27 02:25:36 as along with 3 people and 1 group memerman Geknitics wsjames Oxford Virology
	Germline rates of de novo meiotic deletions and duplications causing several genomic disorders. [My Copy] Nature genetics, Vol. 40, No. 1. (02 January 2008), pp. 90-95. by Daniel J. Turner, Marcos Miretti, Diana Rajan, et al.Heike Fiegler, Nigel P. Carter, Martyn L. Blayney, Stephan Beck, Matthew E. Hurles posted to cnv by sameersoi on 2009-09-23 06:40:33 as along with 3 people noushin ealloza jlangdon
	A chromosomal rearrangement hotspot can be identified from population genetic variation and is coincident with a hotspot for allelic recombination. [My Copy] American journal of human genetics, Vol. 79, No. 5. (November 2006), pp. 890-902. by Sarah J. Lindsay, Mehrdad Khajavi, James R. Lupski, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-09-23 06:35:39 as along with 1 person jermth
	A high-resolution survey of deletion polymorphism in the human genome. [My Copy] Nature genetics, Vol. 38, No. 1. (04 January 2006), pp. 75-81. by Donald F. Conrad, T. Daniel Andrews, Nigel P. Carter, Matthew E. Hurles, Jonathan K. Pritchard posted to population_genetics cnv by sameersoi on 2009-09-23 06:26:25 as along with 6 people and 1 group waszak bpb balajis ashandanj djkt vplagnol Bioinformatics
	Reliabilities of identifying positive selection by the branch-site and the site-prediction methods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6700-6705. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to statistics population_genetics evolution by sameersoi on 2009-09-21 22:40:57 as along with 8 people and 1 group ckenaley djkt rvosa ramiro2k gjuggler bpcusack atphan gulsacan FAB-lab
	Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted to cnv by sameersoi on 2009-09-21 19:13:34 as along with 32 people and 5 groups biovils lp2 daveGerrard timhubbard Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu cisevol caseybrown frohike jandot Roswell Cancer Crosstalk Visiting Position Bioinformatics EisenLab cis-regulatory-evolution
	Coalescent-based association mapping and fine mapping of complex trait loci. [My Copy] Genetics, Vol. 169, No. 2. (February 2005), pp. 1071-1092. by Sebastian Zöllner, Jonathan K. Pritchard posted to statistics population_genetics association by sameersoi on 2009-09-21 16:33:14 as along with 2 people renewang mailund
	Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. [My Copy] American journal of human genetics, Vol. 70, No. 3. (March 2002), pp. 686-707. by A. P. Morris, J. C. Whittaker, D. J. Balding posted to statistics population_genetics association by sameersoi on 2009-09-21 16:32:46 as along with 2 people renewang mailund
	Gene mapping via the ancestral recombination graph. [My Copy] Theoretical population biology, Vol. 62, No. 2. (September 2002), pp. 215-229. by Fabrice Larribe, Sabin Lessard, Nicholas J. Schork posted to statistics population_genetics association by sameersoi on 2009-09-21 16:29:00 as along with 1 person mailund
	Whole genome association mapping by incompatibilities and local perfect phylogenies [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (16 October 2006), 454. by Thomas Mailund, Soren Besenbacher, Mikkel Schierup posted to statistics population_genetics association by sameersoi on 2009-09-21 16:28:21 as along with 2 people druvus mailund
	Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. [My Copy] Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1517-1528. by Badri Padhukasahasram, Jeffrey D. Wall, Paul Marjoram, Magnus Nordborg posted to statistics population_genetics by sameersoi on 2009-09-18 21:27:36 as along with 2 people bertrandservin badripk
	Detecting selective sweeps: a new approach based on hidden markov models. [My Copy] Genetics, Vol. 181, No. 4. (9 April 2009), pp. 1567-1578. by Simon Boitard, Christian Schlötterer, Andreas Futschik posted to statistics population_genetics human_adaptation by sameersoi on 2009-09-18 21:27:16 as along with 4 people ilyashl druvus sriesenfeld djkt
	On adaptive stratification [My Copy] (4 Sep 2009) by Pierre Etoré, Gersende Fort, Benjamin Jourdain, Eric Moulines posted to statistics by sameersoi on 2009-09-13 03:41:38 as
	Mechanisms of change in gene copy number [My Copy] Nature Reviews Genetics, Vol. 10, No. 8. (01 August 2009), pp. 551-564. by P. J. Hastings, James R. Lupski, Susan M. Rosenberg, Grzegorz Ira posted to cnv by sameersoi on 2009-09-09 21:12:29 as along with 13 people and 1 group biovils Zephyrus xingxu qayub nicolesoranzo pkonings jandot rdiaz misonneh fenghezi daforerog ppgardne psique Journal picks
	Linkage disequilibrium between two high-frequency deletion polymorphisms: implications for association studies involving the glutathione-S transferase (GST) genes. [My Copy] PLoS genetics, Vol. 5, No. 5. (May 2009) by Yongzhong Zhao, Michael Marotta, Evan E. Eichler, Charis Eng, Hisashi Tanaka posted to population_genetics cnv association by sameersoi on 2009-09-09 06:29:13 as
	Refining the 22q11.2 deletion breakpoints in DiGeorge syndrome by aCGH. [My Copy] Cytogenetic and genome research, Vol. 124, No. 2. (2009), pp. 113-120. by D. C. Bittel, S. Yu, H. Newkirk, et al.N. Kibiryeva, A. Holt, M. G. Butler, L. D. Cooley posted to cnv association by sameersoi on 2009-09-09 06:28:48 as
	Quantitative analysis of single nucleotide polymorphisms within copy number variation. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Soohyun Lee, Simon Kasif, Zhiping Weng, Charles R. Cantor posted to population_genetics cnv by sameersoi on 2009-09-09 06:26:10 as
	Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. [My Copy] Genetics, Vol. 152, No. 3. (July 1999), pp. 1079-1089. by S. Schneider, L. Excoffier posted to statistics population_genetics by sameersoi on 2009-09-09 03:41:34 as
	An empirical exploration of the (delta mu)2 genetic distance for 213 human microsatellite markers. [My Copy] American journal of human genetics, Vol. 65, No. 4. (October 1999), pp. 1125-1133. by G. Cooper, W. Amos, R. Bellamy, et al.M. R. Siddiqui, A. Frodsham, A. V. Hill, D. C. Rubinsztein posted to statistics population_genetics by sameersoi on 2009-09-09 00:06:38 as along with 1 person druvus
	Searching for Evidence of Positive Selection in the Human Genome Using Patterns of Microsatellite Variability [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1143-1153. by Bret A. Payseur, Asher D. Cutter, Michael W. Nachman posted to statistics population_genetics human_adaptation by sameersoi on 2009-09-08 23:54:05 as
	Characterization of demographic expansions from pairwise comparisons of linked microsatellite haplotypes. [My Copy] Genetics, Vol. 181, No. 3. (March 2009), pp. 1013-1019. by Miguel Navascués, Olivier J. Hardy, Concetta Burgarella posted to statistics population_genetics by sameersoi on 2009-09-08 23:00:31 as
	A probabilistic approach for SNP discovery in high-throughput human resequencing data [My Copy] Genome Research, Vol. 19, No. 9. (15 September 2009), pp. 1542-1552. by Rose Hoberman, Joana Dias, Bing Ge, et al.Eef Harmsen, Michael Mayhew, Dominique J. Verlaan, Tony Kwan, Ken Dewar, Mathieu Blanchette, Tomi Pastinen posted to statistics sequencing by sameersoi on 2009-09-02 18:01:24 as along with 7 people druvus megraw guhjy n00c fenghezi natstreet djkt
	Mobile elements create structural variation: Analysis of a complete human genome [My Copy] Genome Research, Vol. 19, No. 9. (13 September 2009), pp. 1516-1526. by Jinchuan Xing, Yuhua Zhang, Kyudong Han, et al.Abdel H. Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, Lynn B. Jorde posted to cnv by sameersoi on 2009-09-02 17:57:49 as along with 10 people and 1 group operon n00c djkt APRegier dchughes fenghezi jandot Dulcinea natstreet JustinCrocker Journal picks