sameersoi's population_genetics [89 articles] Export

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	Adaptive approximate Bayesian computation [My Copy] (28 Mar 2009) by Mark A. Beaumont, Jean-Marie Cornuet, Jean-Michel Marin, Christian P. Robert posted to statistics population_genetics by sameersoi on 2009-12-17 21:02:34 as along with 1 person dah
	Non-linear regression models for Approximate Bayesian Computation [My Copy] (23 Feb 2009) by M. G. B. Blum, O. Francois posted to statistics population_genetics by sameersoi on 2009-12-17 21:02:13 as along with 1 person dah
	Measuring the Sensitivity of Single-locus "Neutrality Tests" Using a Direct Perturbation Approach [My Copy] Mol Biol Evol, Vol. 27, No. 1. (1 January 2010), pp. 73-89. by Daniel Garrigan, Richard Lewontin, John Wakeley posted to statistics population_genetics by sameersoi on 2009-12-16 22:05:57 as
	Lower Linkage Disequilibrium at CNVs is due to Both Recurrent Mutation and Transposing Duplications [My Copy] Mol Biol Evol, Vol. 27, No. 1. (1 January 2010), pp. 103-111. by Daniel R. Schrider, Matthew W. Hahn posted to population_genetics evolution cnv by sameersoi on 2009-12-16 22:03:36 as along with 1 person dchughes
	An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila [My Copy] PLoS Genet, Vol. 4, No. 9. (19 September 2008), e1000198. by Jeffrey D. Jensen, Kevin R. Thornton, Peter Andolfatto posted to statistics population_genetics by sameersoi on 2009-12-15 07:54:49 as along with 6 people and 1 group ilyashl renewang APRegier maren jbsaltz emptyhb Notre Dame Bioinformatics
	Markov chain Monte Carlo without likelihoods. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15324-15328. by Paul Marjoram, John Molitor, Vincent Plagnol, Simon Tavare posted to statistics population_genetics by sameersoi on 2009-12-15 07:53:20 as along with 4 people rpadams MarkBrewer Xavier tresch
	Approximate Bayesian computation in population genetics. [My Copy] Genetics, Vol. 162, No. 4. (1 December 2002), pp. 2025-2035. by Mark A. Beaumont, Wenyang Zhang, David J. Balding posted to statistics population_genetics by sameersoi on 2009-12-15 07:52:38 as along with 4 people skembel druvus ryanraaum Xavier
	Phylogenomics of primates and their ancestral populations [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 1929-1941. by Adam Siepel posted to statistics population_genetics phylogenetics by sameersoi on 2009-11-30 19:09:13 as along with 4 people and 1 group rvosa djkt aprasad merpublic FAB-lab
	Efficient computation of minimum recombination with genotypes (not haplotypes). [My Copy] Journal of bioinformatics and computational biology, Vol. 5, No. 2a. (April 2007), pp. 181-200. by Yufeng Wu, Dan Gusfield posted to statistics population_genetics phylogenetics by sameersoi on 2009-11-28 22:48:21 as
	Direct maximum parsimony phylogeny reconstruction from genotype data [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 472. by Srinath Sridhar, Fumei Lam, Guy Blelloch, R. Ravi, Russell Schwartz posted to statistics population_genetics phylogenetics by sameersoi on 2009-11-27 18:51:05 as along with 1 person ryanraaum
	A human genome-wide library of local phylogeny predictions for whole-genome inference problems. [My Copy] BMC genomics, Vol. 9 (18 August 2008), 389. by Srinath Sridhar, Russell Schwartz posted to statistics population_genetics evolution by sameersoi on 2009-11-25 20:47:02 as
	Missing the forest for the trees: phylogenetic compression and its implications for inferring complex evolutionary histories. [My Copy] Systematic biology, Vol. 54, No. 1. (February 2005), pp. 146-157. by Cécile Ané, Michael Sanderson posted to statistics population_genetics evolution by sameersoi on 2009-11-23 21:32:24 as
	Fine-Scale Phylogenetic Discordance across the House Mouse Genome [My Copy] PLoS Genet, Vol. 5, No. 11. (20 November 2009), e1000729. by Michael A. White, Cécile Ané, Colin N. Dewey, Bret R. Larget, Bret A. Payseur posted to statistics population_genetics evolution by sameersoi on 2009-11-20 22:39:21 as along with 3 people djkt maren bpcusack
	Solving the Fisher-Wright and Coalescence Problems with a Discrete Markov Chain Analysis [My Copy] Advances in Applied Probability, Vol. 36, No. 4. (2004), pp. 1175-1197. by Samuel R. Buss, Peter Clote posted to statistics population_genetics by sameersoi on 2009-11-20 04:18:18 as
	A genealogical interpretation of principal components analysis. [My Copy] PLoS genetics, Vol. 5, No. 10. (16 October 2009), e1000686. by Gil McVean posted to statistics population_genetics by sameersoi on 2009-11-19 05:46:44 as along with 6 people and 1 group engelhardt djkt bpcusack Geknitics reyez lp2 Journal picks
	The population genetics of structural variation. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Donald F. Conrad, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-11-18 12:50:08 as along with 5 people APRegier guhjy mrkrause rdiaz jlangdon
	Global variation in copy number in the human genome [My Copy] Nature In Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-11-12 21:57:35 as along with 43 people and 7 groups shikin n00c lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	The dynamics of adaptation on correlated fitness landscapes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18638-18643. by Sergey Kryazhimskiy, GaÅ¡per TkaÄik, Joshua B. Plotkin posted to population_genetics evolution by sameersoi on 2009-11-05 17:53:27 as along with 5 people bpcusack tkeitt zwang inquil samubernard
	Phylogenetic MCMC algorithms are misleading on mixtures of trees. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5744. (30 September 2005), pp. 2207-2209. by Elchanan Mossel, Eric Vigoda posted to statistics population_genetics evolution by sameersoi on 2009-10-28 07:33:39 as along with 2 people and 1 group aprasad rvosa FAB-lab
	Targeted Interrogation of Copy Number Variation using SCIMMkit. [My Copy] Bioinformatics (Oxford, England) (21 October 2009), btp606. by Troy Zerr, Gregory M. Cooper, Evan E. Eichler, Deborah A. Nickerson posted to population_genetics cnv by sameersoi on 2009-10-26 00:37:23 as along with 2 people and 1 group leemachado ppgardne Journal picks
	Measures of variation at DNA repeat loci under a general stepwise mutation model. [My Copy] Theoretical population biology, Vol. 50, No. 3. (December 1996), pp. 345-367. by M. Kimmel, R. Chakraborty posted to statistics population_genetics by sameersoi on 2009-10-15 05:14:25 as along with 2 people Dannycoutinho druvus
	Statistics for microsatellite variation based on coalescence. [My Copy] Theoretical population biology, Vol. 50, No. 3. (December 1996), pp. 325-344. by J. K. Pritchard, M. W. Feldman posted to statistics population_genetics by sameersoi on 2009-10-14 23:31:48 as along with 1 person druvus
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature In Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-10-12 18:55:56 as along with 21 people and 1 group n00c Zephyrus gthorisson vplagnol biovils psique chvlyl daed daforerog zufar jessopher DrRichardBadge operon colinveal frohike sf11 polivares dswan qayub bpcusack rdiaz Journal picks
	Gene tree discordance, phylogenetic inference and the multispecies coalescent. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 6. (21 June 2009), pp. 332-340. by James H. Degnan, Noah A. Rosenberg posted to statistics population_genetics evolution by sameersoi on 2009-10-05 22:39:20 as along with 4 people parnell druvus aprasad skembel
	Efficient approximations for learning phylogenetic HMM models from data. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004) by Vladimir Jojic, Nebojsa Jojic, Chris Meek, et al.Dan Geiger, Adam Siepel, David Haussler, D. Heckerman posted to statistics population_genetics by sameersoi on 2009-10-02 20:10:02 as
	Inference of locus-specific ancestry in closely related populations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i213-221. by Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin posted to statistics population_genetics association by sameersoi on 2009-09-28 20:50:41 as
	Methods for High-Density Admixture Mapping of Disease Genes [My Copy] The American Journal of Human Genetics, Vol. 74, No. 5. (May 2004), pp. 979-1000. by N. Patterson, N. Hattangadi, B. Lane, et al.K. Lohmueller, D. Hafler, J. Oksenberg, S. Hauser, M. Smith, S. Obrien, D. Altshuler posted to population_genetics association by sameersoi on 2009-09-28 20:49:45 as along with 3 people ilyashl sriram_s jjannink
	Estimating Local Ancestry in Admixed Populations [My Copy] The American Journal of Human Genetics, Vol. 82, No. 2. (08 February 2008), pp. 290-303. by Sriram Sankararaman, Srinath Sridhar, Gad Kimmel, Eran Halperin posted to statistics population_genetics association by sameersoi on 2009-09-28 19:59:10 as
	On the inference of ancestries in admixed populations [My Copy] Genome Research, Vol. 18, No. 4. (1 April 2008), pp. 668-675. by Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan posted to statistics population_genetics association by sameersoi on 2009-09-28 19:53:40 as along with 2 people renewang gracio
	Detecting Homogeneous Segments in DNA Sequences by Using Hidden Markov Models [My Copy] Journal of the Royal Statistical Society. Series C (Applied Statistics), Vol. 49, No. 2. (2000), pp. 269-285. by Richard J. Boys, Daniel A. Henderson, Darren J. Wilkinson posted to statistics population_genetics evolution by sameersoi on 2009-09-27 22:12:12 as along with 1 person coldmeadow
	Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model [My Copy] PLoS Genet, Vol. 3, No. 2. (23 February 2007), e7. by Asger Hobolth, Ole F. Christensen, Thomas Mailund, Mikkel H. Schierup posted to statistics population_genetics evolution by sameersoi on 2009-09-27 22:10:40 as along with 10 people and 1 group aprasad timflutre jdbowes usagi-kirin nurban nosada17 berthoums kourai mailund lh3 Durbin group
	Phylogenetic inference under recombination using Bayesian stochastic topology selection. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 197-203. by Alex Webb, John M. Hancock, Chris C. Holmes posted to statistics population_genetics evolution by sameersoi on 2009-09-27 22:10:06 as along with 2 people aprasad bertrandservin
	Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16057-16062. by Michael DeGiorgio, Mattias Jakobsson, Noah A. Rosenberg posted to statistics population_genetics human_adaptation evolution by sameersoi on 2009-09-27 02:25:36 as along with 3 people and 1 group memerman Geknitics wsjames Oxford Virology
	A chromosomal rearrangement hotspot can be identified from population genetic variation and is coincident with a hotspot for allelic recombination. [My Copy] American journal of human genetics, Vol. 79, No. 5. (November 2006), pp. 890-902. by Sarah J. Lindsay, Mehrdad Khajavi, James R. Lupski, Matthew E. Hurles posted to population_genetics cnv by sameersoi on 2009-09-23 06:35:39 as along with 1 person jermth
	A high-resolution survey of deletion polymorphism in the human genome. [My Copy] Nature genetics, Vol. 38, No. 1. (04 January 2006), pp. 75-81. by Donald F. Conrad, T. Daniel Andrews, Nigel P. Carter, Matthew E. Hurles, Jonathan K. Pritchard posted to population_genetics cnv by sameersoi on 2009-09-23 06:26:25 as along with 6 people and 1 group waszak bpb balajis ashandanj djkt vplagnol Bioinformatics
	Reliabilities of identifying positive selection by the branch-site and the site-prediction methods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6700-6705. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to statistics population_genetics evolution by sameersoi on 2009-09-21 22:40:57 as along with 8 people and 1 group ckenaley djkt rvosa ramiro2k gjuggler bpcusack atphan gulsacan FAB-lab
	Coalescent-based association mapping and fine mapping of complex trait loci. [My Copy] Genetics, Vol. 169, No. 2. (February 2005), pp. 1071-1092. by Sebastian Zöllner, Jonathan K. Pritchard posted to statistics population_genetics association by sameersoi on 2009-09-21 16:33:14 as along with 2 people renewang mailund
	Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. [My Copy] American journal of human genetics, Vol. 70, No. 3. (March 2002), pp. 686-707. by A. P. Morris, J. C. Whittaker, D. J. Balding posted to statistics population_genetics association by sameersoi on 2009-09-21 16:32:46 as along with 2 people renewang mailund
	Gene mapping via the ancestral recombination graph. [My Copy] Theoretical population biology, Vol. 62, No. 2. (September 2002), pp. 215-229. by Fabrice Larribe, Sabin Lessard, Nicholas J. Schork posted to statistics population_genetics association by sameersoi on 2009-09-21 16:29:00 as along with 1 person mailund
	Whole genome association mapping by incompatibilities and local perfect phylogenies [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (16 October 2006), 454. by Thomas Mailund, Soren Besenbacher, Mikkel Schierup posted to statistics population_genetics association by sameersoi on 2009-09-21 16:28:21 as along with 2 people druvus mailund
	Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. [My Copy] Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1517-1528. by Badri Padhukasahasram, Jeffrey D. Wall, Paul Marjoram, Magnus Nordborg posted to statistics population_genetics by sameersoi on 2009-09-18 21:27:36 as along with 2 people bertrandservin badripk
	Detecting selective sweeps: a new approach based on hidden markov models. [My Copy] Genetics, Vol. 181, No. 4. (9 April 2009), pp. 1567-1578. by Simon Boitard, Christian Schlötterer, Andreas Futschik posted to statistics population_genetics human_adaptation by sameersoi on 2009-09-18 21:27:16 as along with 4 people ilyashl druvus sriesenfeld djkt
	Linkage disequilibrium between two high-frequency deletion polymorphisms: implications for association studies involving the glutathione-S transferase (GST) genes. [My Copy] PLoS genetics, Vol. 5, No. 5. (May 2009) by Yongzhong Zhao, Michael Marotta, Evan E. Eichler, Charis Eng, Hisashi Tanaka posted to population_genetics cnv association by sameersoi on 2009-09-09 06:29:13 as
	Quantitative analysis of single nucleotide polymorphisms within copy number variation. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Soohyun Lee, Simon Kasif, Zhiping Weng, Charles R. Cantor posted to population_genetics cnv by sameersoi on 2009-09-09 06:26:10 as
	Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. [My Copy] Genetics, Vol. 152, No. 3. (July 1999), pp. 1079-1089. by S. Schneider, L. Excoffier posted to statistics population_genetics by sameersoi on 2009-09-09 03:41:34 as
	An empirical exploration of the (delta mu)2 genetic distance for 213 human microsatellite markers. [My Copy] American journal of human genetics, Vol. 65, No. 4. (October 1999), pp. 1125-1133. by G. Cooper, W. Amos, R. Bellamy, et al.M. R. Siddiqui, A. Frodsham, A. V. Hill, D. C. Rubinsztein posted to statistics population_genetics by sameersoi on 2009-09-09 00:06:38 as along with 1 person druvus
	Searching for Evidence of Positive Selection in the Human Genome Using Patterns of Microsatellite Variability [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1143-1153. by Bret A. Payseur, Asher D. Cutter, Michael W. Nachman posted to statistics population_genetics human_adaptation by sameersoi on 2009-09-08 23:54:05 as
	Characterization of demographic expansions from pairwise comparisons of linked microsatellite haplotypes. [My Copy] Genetics, Vol. 181, No. 3. (March 2009), pp. 1013-1019. by Miguel Navascués, Olivier J. Hardy, Concetta Burgarella posted to statistics population_genetics by sameersoi on 2009-09-08 23:00:31 as
	Adaptations to climate in candidate genes for common metabolic disorders. [My Copy] PLoS genetics, Vol. 4, No. 2. (15 February 2008) by Angela M. Hancock, David B. Witonsky, Adam S. Gordon, et al.Gidon Eshel, Jonathan K. Pritchard, Graham Coop, Anna Di Rienzo posted to population_genetics human_adaptation association by sameersoi on 2009-09-01 17:43:55 as along with 1 person and 1 group xingxu Fasting, food and evolution
	Targets of Balancing Selection in the Human Genome [My Copy] Mol Biol Evol In Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2755-2764. by Aida M. Andres, Melissa J. Hubisz, Amit Indap, et al.Dara G. Torgerson, Jeremiah D. Degenhardt, Adam R. Boyko, Ryan N. Gutenkunst, Thomas J. White, Eric D. Green, Carlos D. Bustamante, Andrew G. Clark, Rasmus Nielsen posted to population_genetics human_adaptation by sameersoi on 2009-08-30 05:43:15 as along with 3 people and 1 group djkt qayub aprasad Journal picks