satre's textmining [31 articles] Export

Recent papers added to satre's library classified by the tag textmining. You can also see everyone's textmining.

	FACTA: a text search engine for finding associated biomedical concepts. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 21. (1 November 2008), pp. 2559-2560. by Y. Tsuruoka, J. Tsujii, S. Ananiadou posted to annotation bionlp ie informationextraction informationretrieval pathtext pathway ppi textmining by satre on 2008-10-27 05:57:02 as along with 11 people and 2 groups artaban421 idonaldson Effie sobolevnrm ajaymalik henk-cul Gaetan wisdom_love dullhunk nuin guhjy NaCTeM baker-group
	Text mining and its potential applications in systems biology. [My Copy] Trends in Biotechnology (11 October 2006) by Sophia Ananiadou, Douglas B. Kell, Junichi Tsujii posted to bionlp ner system-biology textmining by satre on 2008-07-27 13:52:18 as along with 17 people and 3 groups artaban421 eesruiz liblab henk-cul guhjy irenas jfr yas dullhunk fisherp jacky957 daniel_schober dejori pablomendes pmendes TheresaNiederberger alanrw ImagCom - Biomedical Text Computing dbk-lab T_lab
	A document retrieval system for man-machine interaction [My Copy] In Proceedings of the 1964 19th ACM national conference (1964) by G. Salton posted to informationextraction informationretrieval ner nlp textmining by satre on 2008-07-27 11:49:55 as
	The SMART Retrieval System---Experiments in Automatic Document Processing [My Copy] (1971) by G. Salton posted to informationextraction informationretrieval nlp textmining by satre on 2008-07-27 11:33:12 as along with 3 people kcho baaic ctl
	Developing a Robust Part-of-Speech Tagger for Biomedical Text [My Copy] Advances in Informatics (2005), pp. 382-392. by Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, et al.Tomoko Ohta, John McNaught, Sophia Ananiadou, Jun’ichi Tsujii posted to bionlp maximum-entropy-modeling ner parsing ppi textmining by satre on 2008-07-26 14:21:22 as along with 2 people johnkork farzanehs
	An algorithm for suffix stripping [My Copy] Program, Vol. 14, No. 3. (1997), pp. 313-316. by M. F. Porter posted to informationretrieval nlp stemming textmining by satre on 2008-07-26 13:06:35 as along with 14 people and 2 groups robert85 scorreia_pro cmalek anthropomorphism uki chrisd eddymier irenas bundschu frohike rlai Documentation_IFP_RKA jgronski creswick dbk-lab MITCCI
	Mining MEDLINE: abstracts, sentences, or phrases? [My Copy] Pac Symp Biocomput (2002), pp. 326-337. by J. Ding, D. Berleant, D. Nettleton, E. Wurtele posted to annotation bionlp informationextraction ppi textmining by satre on 2008-07-24 14:39:52 as along with 4 people and 2 groups yas zlu bundschu ianturton T_lab generif_paper
	Biomedical language processing: what's beyond PubMed? [My Copy] Molecular cell, Vol. 21, No. 5. (3 March 2006), pp. 589-594. by Lawrence Hunter, K. Bretonnel Cohen posted to annotation bionlp corpus informationextraction ppi review textmining by satre on 2008-07-24 14:20:59 as along with 16 people and 3 groups billhao Gaetan artaban421 robert85 lmichan gavinhoran ogenex henk-cul farzanehs irenas andytseng yas hpiwowar caporaso jacky957 TheresaNiederberger dbk-lab T_lab biomedical-nlp
	Literature mining and database annotation of protein phosphorylation using a rule-based system [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2759-2765. by Z. Hu, M. Narayanaswamy, K. Ravikumar, K. Vijay-Shanker, C. Wu posted to annotation bionlp phosphorylation rulebased textmining by satre on 2008-07-24 14:14:05 as along with 3 people benny zlu jacky957
	Filling the Gaps Between Tools and Users: A Tool Comparator, Using Protein-Protein Interactions as an Example [My Copy] In Proceedings of the Pacific Symposium on Biocomputing (PSB), No. 13. (2008), pp. 616-627. by Yoshinobu Kano, Ngan Nguyen, Rune Saetre, et al.Kazuhiro Yoshida, Yusuke Miyao, Yoshimasa Tsuruoka, Yuichiro Matsubayashi, Sophia Ananiadou, Jun'ichi Tsujii posted to aimed bionlp corpus dictionary ner parsing ppi svm textmining uima by satre on 2008-07-23 11:52:33 as along with 1 group dbmi-nlp
	AliBaba: PubMed as a graph. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 19. (1 October 2006), pp. 2444-2445. by C. Plake, T. Schiemann, M. Pankalla, J. Hakenberg, U. Leser posted to bionlp ppi textmining by satre on 2008-07-22 22:43:17 as along with 7 people and 2 groups daforerog Scis0000002 guhjy ianturton avivagabriel dagmar A_Hoogendam dIEMoSIRIS compneur
	Discovering patterns to extract protein-protein interactions from the literature: Part II. [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3294-3300. by Y. Hao, X. Zhu, M. Huang, M. Li posted to biocreative bionlp corpus parsing ppi textmining by satre on 2008-07-22 22:21:54 as along with 3 people arafalov davidandrzej natsu
	Detecting gene relations from Medline abstracts. [My Copy] Pac Symp Biocomput (2001), pp. 483-495. by M. Stephens, M. Palakal, S. Mukhopadhyay, R. Raje, J. Mostafa posted to bionlp ner ppi textmining by satre on 2008-07-22 21:53:55 as along with 2 people and 2 groups henk-cul yas dbmi-nlp T_lab
	Normalizing biomedical terms by minimizing ambiguity and variability [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008) by Yoshimasa Tsuruoka, John Mcnaught, Sophia Ananiadou posted to bionlp dictionary ner textmining by satre on 2008-07-22 19:05:53 as along with 7 people and 2 groups Effie schwartzjmc cisevol yas dullhunk vlachmore guhjy NaCTeM BergmanLab
	Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. [My Copy] Bioinformatics (12 August 2007) by Yoshimasa Tsuruoka, John McNaught, Jun'ichi Tsujii, Sophia Ananiadou posted to bionlp dictionary ner rulebased textmining by satre on 2008-07-22 19:04:25 as along with 5 people schwartzjmc guhjy dullhunk bhaddow vlachmore
	Extracting human protein interactions from MEDLINE using a full-sentence parser. [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611. by N. Daraselia, A. Yuryev, S. Egorov, S. Novichkova, A. Nikitin, I. Mazo posted to bionlp parsing ppi textmining by satre on 2008-07-22 18:59:46 as along with 8 people and 2 groups henk-cul liblab bqchinh irenas Enro miguel natsu zlu dbmi-nlp dbk-lab
	A text-mining perspective on the requirements for electronically annotated abstracts [My Copy] FEBS Letters, Vol. 582, No. 8. (09 April 2008), pp. 1178-1181. by F. Leitner, A. Valencia posted to annotation biocreative bionlp ppi textmining by satre on 2008-07-22 16:27:49 as along with 5 people liblab henk-cul dullhunk ianturton guhjy
	OpenDMAP: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-specific gene expression [My Copy] BMC Bioinformatics, Vol. 9 (31 January 2008), 78. by Lawrence Hunter, Zhiyong Lu, James Firby, et al.William A. Baumgartner, Helen L. Johnson, Philip V. Ogren, Bretonnel K. Cohen posted to biocreative bionlp ner ppi textmining uima by satre on 2008-07-22 14:54:31 as along with 6 people and 2 groups Effie druvus sobolevnrm thomaskelder guhjy yas NaCTeM baker-group
	PIE: an online prediction system for protein-protein interactions from text [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W411-415. by Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang posted to bionlp ppi textmining by satre on 2008-07-22 14:40:56 as along with 4 people thegoose2 neils tharris guhjy
	Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (7 June 2005) by James W. Cooper, Aaron Kershenbaum posted to bionlp ibm ppi rulebased svm textmining by satre on 2008-07-22 12:46:44 as along with 2 people snuppepuppan pggm
	Automatic extraction of biological information from scientific text: protein-protein interactions. [My Copy] Proc Int Conf Intell Syst Mol Biol (1999), pp. 60-67. by C. Blaschke, M. A. Andrade, C. Ouzounis, A. Valencia posted to bionlp ner ppi textmining by satre on 2008-07-22 11:57:46 as along with 6 people and 3 groups Enro miguel yas helliontroy bundschu TheresaNiederberger T_lab biomedical-nlp generif_paper
	Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts. [My Copy] Genome informatics. Workshop on Genome Informatics, Vol. 9 (1998), pp. 62-71. by T. Sekimizu, H. S. Park, J. Tsujii posted to bionlp parsing ppi rulebased textmining by satre on 2008-07-22 08:25:43 as
	Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model. [My Copy] International journal of bioinformatics research and applications, Vol. 4, No. 1. (2008), pp. 64-80. by D. Zhou, Y. He, C. K. Kwoh posted to bionlp ppi svm textmining by satre on 2008-07-22 07:58:17 as
	Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model [My Copy] Computational Science – ICCS 2006 (2006), pp. 718-725. by Deyu Zhou, Yulan He, Chee Kwoh posted to bionlp ppi svm textmining by satre on 2008-07-22 03:07:27 as
	Extracting Protein-Protein Interaction Information from Biomedical Text with SVM [My Copy] IEICE - Trans. Inf. Syst., Vol. E89-D, No. 8. (2006), pp. 2464-2466. by Tomohiro Mitsumori, Masaki Murata, Yasushi Fukuda, Kouichi Doi, Hirohumi Doi posted to bionlp ppi svm textmining by satre on 2008-07-22 03:03:44 as along with 2 people and 1 group henk-cul farzanehs dbmi-nlp
	Accomplishments and challenges in literature data mining for biology. [My Copy] Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561. by L. Hirschman, J. C. Park, J. Tsujii, L. Wong, C. H. Wu posted to bionlp textmining by satre on 2008-07-21 15:11:32 as along with 7 people and 6 groups irenas Enro yas benny kehan caporaso vlachmore dbk-lab biodiversity_conservation Bioinformatics T_lab biomedical-nlp GrassBase
	Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts. [My Copy] Genome informatics. Workshop on Genome Informatics, Vol. 10 (1999), pp. 104-112. by S. K. Ng, M. Wong posted to bionlp dictionary ner pathtext ppi textmining ui-system by satre on 2008-07-21 15:09:46 as
	RelEx--Relation extraction using dependency parse trees [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 365-371. by Katrin Fundel, Robert Kuffner, Ralf Zimmer posted to textmining ppi parsing bionlp by satre on 2008-07-19 07:12:54 as along with 10 people eesruiz pault henk-cul ogenex johnkork farzanehs bhaddow vlachmore TheresaNiederberger gilesc
	Learning Relations from Biomedical Corpora Using Dependency Trees [My Copy] Knowledge Discovery and Emergent Complexity in Bioinformatics (2007), pp. 61-80. by Sophia Katrenko, Pieter Adriaans posted to aimed bionlp ppi textmining by satre on 2008-07-19 07:01:10 as along with 1 person bqchinh
	New challenges for text mining: mapping between text and manually curated pathways [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008), S5. by Kanae Oda, Jin D. Kim, Tomoko Ohta, et al.Daisuke Okanohara, Takuya Matsuzaki, Yuka Tateisi, Jun'ichi Tsujii posted to bionlp pathtext ppi textmining by satre on 2008-07-19 04:18:01 as along with 5 people and 1 group Effie guhjy yas mariakmejia maralena NaCTeM
	A survey of current work in biomedical text mining [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 57-71. by Aaron M. Cohen, William R. Hersh posted to bionlp review textmining by satre on 2008-07-18 17:59:15 as along with 30 people and 9 groups artaban421 lmichan daforerog guelke eesruiz svozil blogbrain fitzgeraldp2 henk-cul lauras mitko vkwn cisevol irenas carlblesius route145 yas natsu t11 hpiwowar fisherp biblio24 bhaddow johnkork c061978 kkaiser benfqt farzanehs lillejul TheresaNiederberger Bioinformatics BergmanLab dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab Evidence-based-medicine IEG

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bionlp	44
ppi	38
textmining	31
ner	19
nlp	13
informationextraction	10
corpus	10
annotation	9
parsing	9
dictionary	8
review	7
rulebased	7
biocreative	7
informationretrieval	6
svm	6
ie	5
pathway	4
pos	4
uima	4
database	3
pathtext	3
ui-system	3
aimed	3
machinelearning	2
stemming	2
survey	2
fulltext	2
system-biology	2
biology	1
medicalrecords	1
akane	1
evaluation	1
relationextraction	1
pasbio	1
ontology	1
go-code-assignmen	1
memm	1
crf	1
unsupervised	1
phosphorylation	1
ibm	1
maximum-entropy-modeling	1
learning	1

satre's textmining [31 articles] Export

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