saunders's codon [41 articles] Export

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	tRNA over-expression in breast cancer and functional consequences. [My Copy] Nucleic acids research (25 September 2009) by Mariana Pavon-Eternod, Suzanna Gomes, Renaud Geslain, Qing Dai, Marsha Rich R. Rosner, Tao Pan posted to usage trna concentration codon cancer breast by saunders on 2009-11-03 14:23:17 as
	Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation. [My Copy] PLoS genetics, Vol. 5, No. 7. (3 July 2009), e1000548. by Joanna L. Parmley, Martijn A. Huynen posted to usage trna slow human codons codon cluster by saunders on 2009-11-03 14:11:30 as along with 4 people danatcaret hrogers bpcusack djkt
	Rare Codons Cluster [My Copy] PLoS ONE, Vol. 3, No. 10. (15 October 2008), e3412. by Thomas F. Clarke, Patricia L. Clark posted to usage minmax measure codon by saunders on 2009-11-02 09:38:23 as along with 1 person cabbagesofdoom
	Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else? [My Copy] Trends in Genetics, Vol. 21, No. 5. (May 2005), pp. 256-259. by Jean-Vincent Chamary, Laurence D. Hurst posted to usage synonymous exon codon boundaries by saunders on 2009-10-30 12:12:47 as along with 2 people setar bpcusack
	Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals. [My Copy] Molecular biology and evolution, Vol. 24, No. 8. (1 August 2007), pp. 1600-1603. by Joanna L. Parmley, Laurence D. Hurst posted to usage exon codon boundaries by saunders on 2009-10-30 12:04:00 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 8. (13 April 1999), pp. 4482-4487. by Laurent Duret, Dominique Mouchiroud posted to usage exon codon boundaries by saunders on 2009-10-30 11:59:55 as along with 4 people and 1 group robfsouza thegoose2 tharris bjorns C. elegans / WormBase
	Co-variation of tRNA Abundance and Codon Usage inEscherichia coliat Different Growth Rates [My Copy] Journal of Molecular Biology, Vol. 260, No. 5. (2 August 1996), pp. 649-663. by H. Dong posted to usage trna mrna ecoli concentration codon by saunders on 2009-10-27 15:13:25 as
	Studies on the relationships between the synonymous codon usage and protein secondary structural units. [My Copy] Biochemical and biophysical research communications, Vol. 269, No. 3. (24 March 2000), pp. 692-696. by S. K. Gupta, S. Majumdar, T. K. Bhattacharya, T. C. Ghosh posted to usage structure protein codon by saunders on 2009-10-26 18:17:26 as along with 1 person gpalidwor
	Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 39. (26 September 2006), pp. 14412-14416. by Yeong-Shin S. Lin, Jake K. Byrnes, Jenn-Kang K. Hwang, Wen-Hsiung H. Li posted to usage trna gene evolution conversion codon by saunders on 2009-10-26 12:32:05 as along with 1 person bpcusack
	Codon usage and replicative strategies of hepatitis A virus. [My Copy] Virus research, Vol. 127, No. 2. (August 2007), pp. 158-163. by Rosa M. Pintó, Lluis Aragonès, M. Isabel Costafreda, Enric Ribes, Albert Bosch posted to virus usage infection hepatitis deoptimised codon by saunders on 2009-10-26 12:28:53 as
	Slow peptide bond formation by proline and other N-alkylamino acids in translation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 1. (6 January 2009), pp. 50-54. by Michael Y. Pavlov, Richard E. Watts, Zhongping Tan, Virginia W. Cornish, Måns Ehrenberg, Anthony C. Forster posted to slow proline peptide codon bond addition by saunders on 2009-10-26 12:23:51 as
	Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis. [My Copy] PloS one, Vol. 4, No. 4. (2009) by Gong Zhang, Zoya Ignatova posted to usage ribosome domain codon boundaries attenuation by saunders on 2009-10-26 12:13:55 as along with 1 person Vincent_Rouilly
	Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level. [My Copy] Proteins, Vol. 25, No. 2. (June 1996), pp. 237-252. by S. Brunak, J. Engelbrecht posted to usage structure protein machine link learning codon by saunders on 2009-10-23 11:06:15 as along with 2 people jengeldk msafi
	Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Fran Supek, Kristian Vlahovicek posted to usage measure codon by saunders on 2009-10-23 11:00:45 as along with 2 people operon marenzelleria
	Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (2004) by Xiu F. Wan, Dong Xu, Andris Kleinhofs, Jizhong Zhou posted to usage relationship codon cg by saunders on 2009-10-23 10:59:22 as along with 3 people codonusage operon msafi
	Folding type specific secondary structure propensities of synonymous codons Folding type specific secondary structure propensities of synonymous codons [My Copy] Nanobioscience, IEEE Transactions on In Nanobioscience, IEEE Transactions on, Vol. 2, No. 3. (2003), pp. 150-157. by Wanjun Gu, Wanjun Gu, Tong Zhou, et al.Tong Zhou, Jianmin Ma, Jianmin Ma, Xiao Sun, Zuhong Lu posted to usage structure secondary codon by saunders on 2009-10-23 10:58:09 as along with 1 person msafi
	Non-random usage of 'degenerate' codons is related to protein three-dimensional structure [My Copy] pp. 78-82. by A. A. Adzhubei posted to usage structure protein link codon by saunders on 2009-10-23 10:56:09 as along with 1 person msafi
	Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. [My Copy] FEBS letters, Vol. 462, No. 3. (3 December 1999), pp. 387-391. by A. A. Komar, T. Lesnik, C. Reiss posted to usage synonymous ribosome folding codon by saunders on 2009-10-22 15:16:26 as
	Universal function-specificity of codon usage. [My Copy] Nucleic acids research (22 September 2009), gkp792. by Hamed Shateri S. Najafabadi, Hani Goodarzi, Reza Salavati posted to usage translation speed protein expression codon by saunders on 2009-10-06 15:40:14 as along with 1 person hrogers
	The rapid evolution of signal peptides is mainly caused by relaxed selection on non-synonymous and synonymous sites. [My Copy] Gene, Vol. 436, No. 1-2. (1 May 2009), pp. 8-11. by Yu-Dong D. Li, Zhong-Yu Y. Xie, Yi-Ling L. Du, et al.Zhan Zhou, Xu-Ming M. Mao, Long-Xian X. Lv, Yong-Quan Q. Li posted to cai codon evolution peptides signal usage by saunders on 2009-08-06 12:22:28 as
	Genetic robustness at the codon level as a measure of selection. [My Copy] Gene, Vol. 443, No. 1-2. (15 August 2009), pp. 64-69. by Marco Archetti posted to codon evolution usage by saunders on 2009-08-06 12:21:09 as
	Translationally optimal codons associate with structurally sensitive sites in proteins. [My Copy] Molecular biology and evolution, Vol. 26, No. 7. (6 July 2009), pp. 1571-1580. by Tong Zhou, Mason Weems, Claus O. Wilke posted to boundaries buried codon domain mutation residues sensitive usage by saunders on 2009-08-06 12:19:21 as along with 3 people and 1 group paramitamandal djkt bpcusack Journal picks
	Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe. [My Copy] Genes to cells : devoted to molecular & cellular mechanisms, Vol. 14, No. 4. (April 2009), pp. 499-509. by Yasushi Hiraoka, Kenichi Kawamata, Tokuko Haraguchi, Yuji Chikashige posted to codon expression gene multiple organisms usage by saunders on 2009-08-06 12:17:07 as
	Analyzing gene expression from relative codon usage bias in Yeast genome: a statistical significance and biological relevance. [My Copy] Gene, Vol. 443, No. 1-2. (15 August 2009), pp. 121-131. by Shibsankar Das, Uttam Roymondal, Satyabrata Sahoo posted to analysis codon usage yeast by saunders on 2009-08-06 12:15:26 as
	The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications. [My Copy] Nucleic acids research, Vol. 15, No. 3. (11 February 1987), pp. 1281-1295. by P. M. Sharp, W. H. Li posted to adaption cai calculate codon index by saunders on 2009-06-02 16:09:53 as along with 9 people codonusage mgomes qluo antonkratz dswan operon bjorns gpalidwor aaronsmith
	Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. [My Copy] Nature structural & molecular biology, Vol. 16, No. 3. (8 March 2009), pp. 274-280. by Gong Zhang, Magdalena Hubalewska, Zoya Ignatova posted to codon cotranslation experiment folding ribosome usage by saunders on 2009-03-13 10:51:12 as along with 1 person bratwurst
	A pause for thought along the co-translational folding pathway. [My Copy] Trends in biochemical sciences (6 November 2008) by Anton A A. Komar posted to co-translation codon folding review by saunders on 2009-01-06 17:11:51 as along with 1 person dchughes
	CodonO: codon usage bias analysis within and across genomes. [My Copy] Nucleic Acids Res (30 May 2007) by Michael C C. Angellotti, Shafquat B B. Bhuiyan, Guorong Chen, Xiu-Feng F. Wan posted to codon mrna rate translation usage by saunders on 2008-07-17 11:42:19 as along with 3 people and 1 group operon papamicd kiara Bioinformatics
	Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination. [My Copy] Biochemistry and cell biology = Biochimie et biologie cellulaire, Vol. 85, No. 2. (April 2007), pp. 218-226. by Y. Zheng, W. M. Zhao, H. Wang, et al.Y. B. Zhou, Y. Luan, M. Qi, Y. Z. Cheng, W. Tang, J. Liu, H. Yu, X. P. Yu, Y. J. Fan, X. Yang posted to codon expression mrna usage by saunders on 2008-04-15 15:28:58 as
	Contextual constraints on synonymous codon choice. [My Copy] Journal of molecular biology, Vol. 163, No. 3. (25 January 1983), pp. 363-376. by D. J. Lipman, W. J. Wilbur posted to codon constraints mrna third usage by saunders on 2008-04-14 16:37:56 as
	Excessive clustering of third codon position pyrimidines in prokaryotes. [My Copy] Journal of biomolecular structure & dynamics, Vol. 25, No. 6. (June 2008), pp. 647-654. by A. E. Rapoport, E. N. Trifonov posted to codon position pyrimidines third usage by saunders on 2008-04-14 16:36:20 as
	Distribution of rare triplets along mRNA and their relation to protein folding. [My Copy] J Biomol Struct Dyn, Vol. 20, No. 3. (December 2002), pp. 413-420. by C. H. Makhoul, E. N. Trifonov posted to codon folding mrna protein structure usage by saunders on 2008-04-14 16:35:04 as along with 1 person gpalidwor
	[Analysis of the primary structure of mRNA from Escherichia coli: occurrence of nucleotides on the 3'-side of the codon] [My Copy] Molekuliarnaia biologiia, Vol. 19, No. 3. (n 1985), pp. 791-799. by E. G. Shpaer posted to codon mrna usage by saunders on 2008-04-14 16:34:33 as
	Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes. [My Copy] Gene, Vol. 18, No. 3. (June 1982), pp. 199-209. by H. Grosjean, W. Fiers posted to codon degenerate trna usage by saunders on 2008-04-14 16:34:02 as
	Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis. [My Copy] Biochem Biophys Res Commun, Vol. 354, No. 3. (16 March 2007), pp. 693-699. by B. Kahali, S. Basak, T. C. Ghosh posted to codon mrna protein sse usage by saunders on 2008-01-09 16:14:27 as
	Nucleic acid composition, codon usage, and the rate of synonymous substitution in protein-coding genes. [My Copy] J Mol Evol, Vol. 28, No. 4. (April 1989), pp. 286-298. by A. Ticher, D. Graur posted to codon mrna protein sse usage by saunders on 2008-01-09 15:58:14 as
	Non-random usage of 'degenerate' codons is related to protein three-dimensional structure. [My Copy] FEBS Lett, Vol. 399, No. 1-2. (9 December 1996), pp. 78-82. by A. A. Adzhubei, I. A. Adzhubei, I. A. Krasheninnikov, S. Neidle posted to codon mrna protein sse usage by saunders on 2008-01-09 15:58:02 as along with 1 person gpalidwor
	The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens. [My Copy] Biosystems, Vol. 73, No. 2. (February 2004), pp. 89-97. by W. Gu, T. Zhou, J. Ma, X. Sun, Z. Lu posted to codon mrna protein sse usage by saunders on 2008-01-09 15:15:53 as
	The relationship between synonymous codon usage and protein structure. [My Copy] FEBS Lett, Vol. 434, No. 1-2. (28 August 1998), pp. 93-96. by T. Xie, D. Ding, X. Tao, D. Dafu posted to codon mrna protein sse usage by saunders on 2008-01-09 15:15:29 as along with 1 person operon
	Folding type specific secondary structure propensities of synonymous codons. [My Copy] IEEE Trans Nanobioscience, Vol. 2, No. 3. (September 2003), pp. 150-157. by W. Gu, T. Zhou, J. Ma, X. Sun, Z. Lu posted to codon mrna sse usage by saunders on 2008-01-09 15:13:29 as along with 1 person gpalidwor
	Synonymous codon usage in different protein secondary structural classes of human genes: implication for increased non-randomness of GC3 rich genes towards protein stability. [My Copy] J Biosci, Vol. 32, No. 5. (August 2007), pp. 947-963. by P. Mukhopadhyay, S. Basak, T. C. Ghosh posted to codon mrna sse usage by saunders on 2008-01-09 15:08:42 as

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bibtex-import	153
protein	68
folding	52
structure	43
codon	41
usage	38
prediction	29
co-translation	24
mrna	18
secondary	17
model	13
ribosome	13
review	10
sse	9
experiment	7
bias	6
cotranslation	6
hp	6
trna	6
boundaries	5
crowding	5
evolution	5
stability	5
translation	5
vivo	5
casp	4
database	4
function	4
lattice	4
molecular	4
mutation	4
synonymous	4
translocation	4
2d	3
3d	3
chaperones	3
domains	3
exon	3
expression	3
fragments	3
global	3
grail	3
holy	3
kinetics	3
nmr	3
progress	3
rosetta	3
sequence	3
signal	3
slow	3
speed	3
uniprot	3
vectorial	3
assessment	2
cai	2
carlo	2
casp7	2
chaperone	2
codons	2
concentration	2
contact	2
cooperativity	2
domain	2
eva	2
evidence	2
fragment	2
funnel	2
gdt_ts	2
gene	2
gtop	2
levinthal	2
link	2
measure	2
monte	2
nonrandom	2
n-terminal	2
nucleotide	2
pause	2
pdb	2
rna	2
scoring	2
sec	2
server	2
tertiary	2
third	2
time	2
vienna	2
x-ray	2
abcb1	1
acetylation	1
adaption	1
addition	1
algorithm	1
alignment	1
alignments	1
alphabet	1
amino	1
analysis	1
angstrom	1
astral	1
attenuation	1
background	1
bacteria	1
binding	1
biology	1
bond	1
breast	1
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calculate	1
cancer	1
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casp6	1
casp8	1
cg	1
chain	1
chemistry	1
chimera	1
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cluster	1
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comparison	1
computational	1
conserved	1
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cotranslational	1
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cross-reference	1
cut-off	1
degenerate	1
degradation	1
deoptimised	1
dfire	1
difference	1
directionality	1
distribution	1
dope	1
dssp	1
dynamics	1
dyson	1
ecoli	1
effects	1
electron	1
embl	1
endoplasmic	1
energy	1
evaluation	1
experimental	1
formation	1
free	1
fret	1
gfp	1
glycan	1
groel	1
groes	1
helices	1
hepatitis	1
human	1
hydrophobicity	1
hypothesis	1
in	1
index	1
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initiation	1
i-tasser	1
jpred	1
kinetic	1
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local	1
loop	1
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machine	1
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mdr1	1
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microscopy	1
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minmax	1
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modelling	1
multiple	1
myoglobin	1
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network	1
nuclei	1
order	1
organisms	1
p22	1
peptide	1
peptides	1
phd	1
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picr	1
position	1
prion	1
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psipred	1
pyrimidines	1
rate	1
reference	1
relationship	1
residues	1
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reticulum	1
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samt_99	1
scop	1
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space	1
srp	1
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tasser	1
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terminal	1
termini	1
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tmscore	1
transition	1
trembl	1
tructure	1
unstructured	1
virus	1
visualisation	1
vitro	1
water	1
yeast	1
zhang	1

saunders's codon [41 articles] Export

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