saunders's structure [53 articles] Export

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	Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins. [My Copy] FEBS letters (6 November 2009) by Magali Frugier, Tania Bour, Maya Ayach, Manuel A. Santos, Joëlle Rudinger-Thirion, Anne Théobald-Dietrich posted to structure plasmodium mrna low complexity co-translationaolding by saunders on 2009-11-18 17:08:10 as
	Control of translation by the conformation of messenger RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 68, No. 3. (March 1971), pp. 570-573. by H. Fukami, K. Imahori posted to translation structure mrna accuracy by saunders on 2009-11-18 17:00:54 as
	The secondary structure of mRNAs from Escherichia coli: its possible role in increasing the accuracy of translation. [My Copy] Nucleic acids research, Vol. 13, No. 1. (11 January 1985), pp. 275-288. by E. G. Shpaer posted to translation structure secondary protein mrna by saunders on 2009-11-18 16:56:22 as
	The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr. [My Copy] Genetics, Vol. 159, No. 2. (October 2001), pp. 623-633. by D. B. Carlini, Y. Chen, W. Stephan posted to translation structure mrna codon by saunders on 2009-11-18 16:49:06 as
	Statistical correlation between protein secondary structure and messenger RNA stem-loop structure. [My Copy] Biopolymers, Vol. 73, No. 1. (January 2004), pp. 16-26. by Mengwen Jia, Liaofu Luo, Ciquan Liu posted to structure stem secondary protein mrna loop by saunders on 2009-11-18 16:12:32 as along with 1 person bpcusack
	MONSSTER: a method for folding globular proteins with a small number of distance restraints. [My Copy] Journal of molecular biology, Vol. 265, No. 2. (17 January 1997), pp. 217-241. by J. Skolnick, A. Kolinski, A. R. Ortiz posted to structure restraints prediction by saunders on 2009-11-18 11:26:11 as
	Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model. [My Copy] Proteins, Vol. 32, No. 4. (1 September 1998), pp. 475-494. by A. Kolinski, J. Skolnick posted to structure restraints prediction by saunders on 2009-11-18 11:23:49 as along with 2 people wilbur dgront
	Progress and challenges in protein structure prediction [My Copy] Curr. Opin. Struct. Biol. In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Yang Zhang posted to template structure review prediction free by saunders on 2009-11-18 11:02:15 as along with 11 people ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb kgutwin chad_davis barry phoenixzxl marck zwang
	EVA: Large-scale analysis of secondary structure prediction [My Copy] Proteins: Structure, Function, and Genetics, Vol. 45, No. S5. (2001), pp. 192-199. by Burkhard Rost, Volker A. Eyrich posted to structure secondary scale large eva analysis by saunders on 2009-11-17 14:41:39 as
	Backbone Dynamics of the Monomeric λ Repressor Denatured State Ensemble under Nondenaturing Conditions† [My Copy] Biochemistry, Vol. 46, No. 5. (1 February 2007), pp. 1141-1151. by Preeti Chugha, Terrence G. Oas posted to structure nmr native n-terminal methionine helix by saunders on 2009-11-17 10:17:28 as
	GTOP: a database of protein structures predicted from genome sequences. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 294-298. by Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, et al.Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, Ken Nishikawa posted to structure protein mrna gtop database by saunders on 2009-11-12 18:33:15 as along with 1 person tny
	The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, et al.Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa posted to structure protein mrna gtop database by saunders on 2009-11-12 18:32:14 as along with 2 people tprpip guhjy
	A brighter future for protein structure prediction [My Copy] Nature Structural & Molecular Biology, Vol. 6, No. 2. (01 February 1999), pp. 108-111. by Patrice Koehl, Michael Levitt posted to structure protein prediction holy grail by saunders on 2009-11-12 17:44:40 as
	Predicting protein three-dimensional structure [My Copy] Current Opinion in Biotechnology, Vol. 10, No. 6. (1 December 1999), pp. 583-588. by J. Moult posted to structure protein prediction holy grail by saunders on 2009-11-12 17:43:59 as
	Progress in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 7, No. 3. (June 1997), pp. 377-387. by D. T. Jones posted to structure protein prediction holy grail by saunders on 2009-11-12 17:40:00 as along with 1 person j3xucite
	Protein structure prediction begins well but ends badly [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2009), NA. by Rhodri Saunders, Charlotte M. Deane posted to tertiary structure secondary protein prediction casp bias by saunders on 2009-11-12 14:21:03 as along with 1 group OPIG
	The Levinthal paradox: yesterday and today. [My Copy] Folding & design, Vol. 2, No. 4. (1997) by M. Karplus posted to structure restriction nonrandom levinthal folding by saunders on 2009-11-10 13:58:42 as along with 1 person faccioli
	Structural determinants of protein folding. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 14. (1 July 2009), pp. 2341-2361. by Tse Siang S. Kang, R. Manjunatha Kini posted to structure review protein function folding by saunders on 2009-11-10 13:51:48 as along with 1 person skywalkerus02
	A synonymous polymorphism in a common MDR1 (ABCB1) haplotype shapes protein function. [My Copy] Biochimica et biophysica acta, Vol. 1794, No. 5. (May 2009), pp. 860-871. by King Leung L. Fung, Michael M. Gottesman posted to synonymous structure protein mutation mdr1 abcb1 by saunders on 2009-11-10 13:48:44 as
	Structural conservation of a short, functional, peptide-sequence motif. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 14 (2009), pp. 1143-1151. by Susan Fox-Erlich, Martin R. Schiller, Michael R. Gryk posted to unstructured structure signalling conserved by saunders on 2009-11-10 13:47:54 as
	Studies on the relationships between the synonymous codon usage and protein secondary structural units. [My Copy] Biochemical and biophysical research communications, Vol. 269, No. 3. (24 March 2000), pp. 692-696. by S. K. Gupta, S. Majumdar, T. K. Bhattacharya, T. C. Ghosh posted to usage structure protein codon by saunders on 2009-10-26 18:17:26 as along with 1 person gpalidwor
	Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level. [My Copy] Proteins, Vol. 25, No. 2. (June 1996), pp. 237-252. by S. Brunak, J. Engelbrecht posted to usage structure protein machine link learning codon by saunders on 2009-10-23 11:06:15 as along with 2 people jengeldk msafi
	Folding type specific secondary structure propensities of synonymous codons Folding type specific secondary structure propensities of synonymous codons [My Copy] Nanobioscience, IEEE Transactions on In Nanobioscience, IEEE Transactions on, Vol. 2, No. 3. (2003), pp. 150-157. by Wanjun Gu, Wanjun Gu, Tong Zhou, et al.Tong Zhou, Jianmin Ma, Jianmin Ma, Xiao Sun, Zuhong Lu posted to usage structure secondary codon by saunders on 2009-10-23 10:58:09 as along with 1 person msafi
	Non-random usage of 'degenerate' codons is related to protein three-dimensional structure [My Copy] pp. 78-82. by A. A. Adzhubei posted to usage structure protein link codon by saunders on 2009-10-23 10:56:09 as along with 1 person msafi
	Comparison of predicted and experimentally determined secondary structure of adenyl kinase. [My Copy] Nature, Vol. 250, No. 462. (12 July 1974), pp. 140-142. by G. E. Schulz, C. D. Barry, J. Friedman, et al.P. Y. Chou, G. D. Fasman, A. V. Finkelstein, V. I. Lim, O. B. Pititsyn, E. A. Kabat, T. T. Wu, M. Levitt, B. Robson, K. Nagano posted to structure secondary prediction bias by saunders on 2009-09-24 12:05:31 as
	Evaluation of secondary structure predictions in proteins. [My Copy] Biochimica et biophysica acta, Vol. 491, No. 1. (28 March 1977), pp. 333-338. by J. A. Lenstra posted to structure secondary prediction by saunders on 2009-09-24 11:56:15 as
	An assessment of protein secondary structure prediction methods based on amino acid sequence. [My Copy] Biochimica et biophysica acta, Vol. 439, No. 2. (9 August 1976), pp. 261-273. by P. Argos, J. Schwarz, J. Schwarz posted to structure secondary prediction bias by saunders on 2009-09-24 11:55:08 as
	A critical evaluation of methods for prediction of protein secondary structures. [My Copy] Annual review of biophysics and biophysical chemistry, Vol. 17 (1988), pp. 1-21. by G. E. Schulz posted to structure secondary prediction bias by saunders on 2009-09-24 10:53:23 as
	TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 98, No. 18. (28 August 2001), pp. 10125-10130. by Daisuke Kihara, Hui Lu, Andrzej Kolinski, Jeffrey Skolnick posted to prediction protein speed structure by saunders on 2009-05-05 11:57:37 as along with 1 person j3xucite
	Protein structure prediction and structural genomics. [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 93-96. by D. Baker, A. Sali posted to prediction progress protein speed structure time by saunders on 2009-05-05 11:56:07 as along with 11 people and 2 groups mijam newton1234 taikoo ana vavi dgront sriram_s mirzazadeh mingzhi granujilla janasont structural_bioinformatics Bioinformatics
	Protein secondary structure prediction with a neural network. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 1. (January 1989), pp. 152-156. by L. H. Holley, M. Karplus posted to amino bias prediction protein secondary structure terminal by saunders on 2009-04-02 16:21:12 as
	A physical basis for protein secondary structure. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 25. (7 December 1999), pp. 14258-14263. by R. Srinivasan, G. D. Rose posted to effects folding mediated protein sequence structure by saunders on 2009-04-02 16:17:59 as along with 2 people and 1 group Diego_Prada Einat structural_bioinformatics
	Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution. [My Copy] Proteins, Vol. 55, No. 1. (1 April 2004), pp. 107-114. by Y. Xia, M. Levitt posted to evolution folding model sequence simplified structure by saunders on 2009-02-26 15:13:36 as along with 1 person aalibes
	Simulating protein evolution in sequence and structure space. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207. by Y. Xia, M. Levitt posted to evolution sequence space structure by saunders on 2009-02-26 15:12:34 as along with 13 people and 4 groups idoerg yuslinaz betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart analogAI insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted to dssp protein structure by saunders on 2009-01-15 10:51:52 as along with 32 people barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	The influence of amino-acid sequence on protein structure. [My Copy] Biophysical journal, Vol. 5, No. 6. (November 1965), pp. 809-822. by A. V. Guzzo posted to background prediction protein secondary structure by saunders on 2009-01-06 12:16:20 as
	Improving the accuracy of protein secondary structure prediction using structural alignment [My Copy] BMC Bioinformatics, Vol. 7 (14 June 2006), 301. by Scott Montgomerie, Shan Sundararaj, Warren J. Gallin, David S. Wishart posted to prediction secondary structure by saunders on 2009-01-06 12:11:03 as along with 1 person papamicd
	Combining local-structure, fold-recognition, and new fold methods for protein structure prediction. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 491-496. by K. Karplus, R. Karchin, J. Draper, et al.J. Casper, Y. Mandel-Gutfreund, M. Diekhans, R. Hughey posted to fragments prediction structure by saunders on 2009-01-06 10:06:49 as along with 2 people eckart_bindewald j3xucite
	Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by C. Bystroff, Y. Shao posted to prediction protein server structure by saunders on 2009-01-06 10:03:23 as
	Free modeling with Rosetta in CASP6. [My Copy] Proteins (26 September 2005) by Philip Bradley, Lars Malmström, Bin Qian, et al.Jack Schonbrun, Dylan Chivian, David E E. Kim, Jens Meiler, Kira M S M. Misura, David Baker posted to casp fragment prediction rosetta structure by saunders on 2009-01-06 10:02:12 as along with 5 people and 2 groups jwm marcius dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
	Ab initio modeling of small proteins by iterative TASSER simulations [My Copy] BMC Biology, Vol. 5 (08 May 2007), 17. by Sitao Wu, Jeffrey Skolnick, Yang Zhang posted to fragment prediction structure tasser tertiary by saunders on 2009-01-06 09:54:11 as along with 2 people kgutwin j3xucite
	EVA: large-scale analysis of secondary structure prediction. [My Copy] Proteins, Vol. Suppl 5 (2001), pp. 192-199. by B. Rost, V. A. Eyrich posted to eva prediction secondary structure by saunders on 2009-01-06 09:44:56 as
	EVA: Evaluation of protein structure prediction servers. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3311-3315. by I. Y. Koh, V. A. Eyrich, M. A. Marti-Renom, et al.D. Przybylski, M. S. Madhusudhan, N. Eswar, O. Graña, F. Pazos, A. Valencia, A. Sali, B. Rost posted to eva prediction secondary structure by saunders on 2009-01-06 09:41:26 as along with 3 people and 2 groups marcius penka dgront BioinfoCIPF SGU-CIPF
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted to prediction protein rosetta structure by saunders on 2008-07-08 15:02:11 as along with 7 people mijam granujilla bullli502 nigham thaliana dgront JimmyMac
	Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. [My Copy] Proteins, Vol. 47, No. 2. (1 May 2002), pp. 228-235. by G. Pollastri, D. Przybylski, B. Rost, P. Baldi posted to prediction secondary sspro2 structure by saunders on 2008-07-01 16:47:27 as
	Hidden Markov models for detecting remote protein homologies [My Copy] Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 846-856. by K. Karplus, C. Barrett, R. Hughey posted to prediction samt_99 secondary structure by saunders on 2008-07-01 16:44:42 as along with 7 people and 2 groups ldiambra treangen j3xucite ana dgront rabio granujilla structural_bioinformatics Bioinformatics
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted to prediction psipred secondary structure by saunders on 2008-07-01 16:42:25 as along with 11 people rpetrenko kgutwin pjcite chad_davis wouterboomsma j3xucite dgront rabio rph dandaman granujilla
	Alignments grow, secondary structure prediction improves. [My Copy] Proteins, Vol. 46, No. 2. (1 February 2002), pp. 197-205. by D. Przybylski, B. Rost posted to phdpsi prediction secondary structure by saunders on 2008-07-01 16:36:55 as
	PHD: predicting one-dimensional protein structure by profile-based neural networks. [My Copy] Methods in enzymology, Vol. 266 (1996), pp. 525-539. by B. Rost posted to phd prediction protein structure by saunders on 2008-07-01 16:34:41 as
	Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. [My Copy] Proteins, Vol. 34, No. 4. (1 March 1999), pp. 508-519. by J. A. Cuff, G. J. Barton posted to jpred prediction secondary structure by saunders on 2008-07-01 16:32:58 as

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bibtex-import	153
protein	71
folding	53
structure	53
codon	42
usage	38
prediction	32
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mrna	24
secondary	20
model	13
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review	11
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vitro	1
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zhang	1

saunders's structure [53 articles] Export

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