sbottani's library 545 articles Export

	Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 8. (15 April 2003), pp. 4649-4654. by Keith L. Adams, Richard Cronn, Ryan Percifield, Jonathan F. Wendel posted to no-tag by sbottani on 2009-11-16 16:12:06 as along with 3 people timflutre echinotrix bluto
	Biological systems modeling and analysis: a biomolecular technique of the twenty-first century. [My Copy] Journal of biomolecular techniques : JBT, Vol. 17, No. 4. (September 2006), pp. 252-269. by Gautam Goel, I-Chun C. Chou, Eberhard O. Voit posted to system modeling computational biology by sbottani on 2009-10-11 11:44:38 as along with 1 person athleem
	Molecular paleoscience: systems biology from the past. [My Copy] Advances in enzymology and related areas of molecular biology, Vol. 75 (2007) by Steven A. Benner, Slim O. Sassi, Eric A. Gaucher posted to science of history by sbottani on 2009-10-11 11:40:39 as along with 1 person pablocarb
	The Duration of Meiosis [My Copy] Proceedings of the Royal Society of London. Series B. Biological Sciences, Vol. 178, No. 1052. (3 August 1971), pp. 277-299. by M. D. Bennett posted to no-tag by sbottani on 2009-10-01 14:00:12 as
	The necessary junk: new functions for transposable elements [My Copy] Hum. Mol. Genet., Vol. 16, No. R2. (15 October 2007), pp. R159-167. by Alysson R. Muotri, Maria C. N. Marchetto, Nicole G. Coufal, Fred H. Gage posted to no-tag by sbottani on 2009-09-29 16:13:50 as along with 7 people and 2 groups operon TimRooney andreasapostolides dchughes gpappas RaquelSL ArtemPankin BergmanLab Khavkin's lab
	Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 28, No. 9. (September 2006), pp. 913-922. by Jean-Nicolas N. Volff posted to no-tag by sbottani on 2009-09-29 16:12:57 as along with 3 people and 3 groups dchughes braingrind paulcartwright G4ID Genetics-of-Gambling BergmanLab
	Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 40. (7 October 2008), pp. 15470-15474. by Anupma Sharma, Kevin L. Schneider, Gernot G. Presting posted to no-tag by sbottani on 2009-09-29 16:11:56 as along with 2 people operon bpcusack
	Genomic changes in synthetic Arabidopsis polyploids. [My Copy] The Plant journal : for cell and molecular biology, Vol. 41, No. 2. (January 2005), pp. 221-230. by Andreas Madlung, Anand P. Tyagi, Brian Watson, et al.Hongmei Jiang, Trevor Kagochi, Rebecca W. Doerge, Robert Martienssen, Luca Comai posted to no-tag by sbottani on 2009-09-29 14:46:01 as along with 1 person and 1 group ArtemPankin Khavkin's lab
	Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. [My Copy] Genome research, Vol. 16, No. 10. (October 2006), pp. 1262-1269. by Benoit Piegu, Romain Guyot, Nathalie Picault, et al.Anne Roulin, Abhijit Saniyal, Hyeran Kim, Kristi Collura, Darshan S. Brar, Scott Jackson, Rod A. Wing, Olivier Panaud posted to no-tag by sbottani on 2009-09-29 14:45:08 as along with 2 people timflutre aprasad
	Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. [My Copy] Genome research, Vol. 16, No. 7. (1 July 2006), pp. 934-946. by Brian C. Thomas, Brent Pedersen, Michael Freeling posted to no-tag by sbottani on 2009-09-29 14:44:27 as along with 2 people alhufton dandaman
	Buffering: a possible passive-homeostasis role for redundant DNA. [My Copy] Journal of theoretical biology, Vol. 193, No. 2. (27 July 1998), pp. 197-199. by A. E. Vinogradov posted to no-tag by sbottani on 2009-09-29 14:43:42 as
	The general affinity of lac repressor for E. coli DNA: implications for gene regulation in procaryotes and eucaryotes. [My Copy] Cell, Vol. 4, No. 2. (February 1975), pp. 107-111. by S. Lin, A. D. Riggs posted to no-tag by sbottani on 2009-09-29 14:42:35 as
	A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 88, No. 20. (15 October 1991), pp. 9107-9111. by A. Goldbeter posted to no-tag by sbottani on 2009-09-29 14:41:29 as along with 3 people and 1 group Dangerfc jasonpark1 ajitkumar22 BP205
	Polyploid incidence and evolution. [My Copy] Annual review of genetics, Vol. 34 (2000), pp. 401-437. by S. P. Otto, J. Whitton posted to no-tag by sbottani on 2009-09-29 14:40:34 as along with 2 people echinotrix BioNica
	Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. [My Copy] The Plant cell, Vol. 13, No. 8. (1 August 2001), pp. 1735-1747. by H. Ozkan, A. A. Levy, M. Feldman posted to no-tag by sbottani on 2009-09-29 14:39:51 as along with 3 people and 1 group ArtemPankin echinotrix BioNica Khavkin's lab
	Genomic Convergence toward Diploidy in Saccharomyces cerevisiae [My Copy] PLoS Genet, Vol. 2, No. 9. (22 September 2006), e145. by Aleeza C. Gerstein, Hye-Jung E. Chun, Alex Grant, Sarah P. Otto posted to no-tag by sbottani on 2009-09-29 14:39:07 as along with 3 people Annab bpcusack aprasad
	Gene dosage balance in cellular pathways: implications for dominance and gene duplicability. [My Copy] Genetics, Vol. 168, No. 1. (September 2004), pp. 569-574. by Reiner A. Veitia posted to no-tag by sbottani on 2009-09-29 14:38:12 as along with 2 people bpcusack pmendes
	Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. [My Copy] Genome research, Vol. 16, No. 7. (July 2006), pp. 805-814. by Michael Freeling, Brian C. Thomas posted to no-tag by sbottani on 2009-09-29 14:33:56 as
	Organismal complexity, protein complexity, and gene duplicability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15661-15665. by Jing Yang, Richard Lusk, Wen-Hsiung H. Li posted to no-tag by sbottani on 2009-09-29 14:32:57 as along with 1 person bpcusack
	Dosage sensitivity and the evolution of gene families in yeast. [My Copy] Nature, Vol. 424, No. 6945. (10 July 2003), pp. 194-197. by Balázs Papp, Csaba Pál, Laurence D. Hurst posted to yeast_saccharomyces_cerevisiae gene_duplication by sbottani on 2009-09-29 14:31:40 as
	Exploring the etiology of haploinsufficiency. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 24, No. 2. (February 2002), pp. 175-184. by Reiner A. Veitia posted to transcription_factor theoretical_analysis synergy genetic_dominance gene_expression_levels by sbottani on 2009-09-29 14:30:35 as along with 2 people ramensky bpcusack
	The problem of the eukaryotic genome size. [My Copy] Biochemistry. Biokhimii͡a, Vol. 73, No. 13. (December 2008), pp. 1519-1552. by L. I. Patrushev, I. G. Minkevich posted to no-tag by sbottani on 2009-09-29 14:28:58 as
	Ploidy regulation of gene expression. [My Copy] Science (New York, N.Y.), Vol. 285, No. 5425. (9 July 1999), pp. 251-254. by T. Galitski, A. J. Saldanha, C. A. Styles, E. S. Lander, G. R. Fink posted to no-tag by sbottani on 2009-09-29 14:28:33 as along with 3 people Annab rdowell behindtherabbit
	Skeletal DNA and the evolution of genome size. [My Copy] Annual review of biophysics and bioengineering, Vol. 11 (1982), pp. 273-302. by T. Cavalier-Smith posted to no-tag by sbottani on 2009-09-29 14:27:24 as
	Nuclear DNA content and minimum generation time in herbaceous plants. [My Copy] Proceedings of the Royal Society of London. Series B, Containing papers of a Biological character. Royal Society (Great Britain), Vol. 181, No. 63. (6 June 1972), pp. 109-135. by M. D. Bennett posted to nuclear_dna_content herbaceous_plants generation_time by sbottani on 2009-09-29 14:22:58 as
	The time and duration of meiosis. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 277, No. 955. (21 March 1977), pp. 201-226. by M. D. Bennett posted to no-tag by sbottani on 2009-09-29 14:21:28 as
	The skeletal function of non-genic nuclear DNA: new evidence from ancient cell chimaeras. [My Copy] Genetica, Vol. 106, No. 1-2. (1999), pp. 3-13. by T. Cavalier-Smith, M. J. Beaton posted to no-tag by sbottani on 2009-09-29 14:18:02 as
	The desoxyribonucleic acid content of animal cells and its evolutionary significance. [My Copy] The Journal of general physiology, Vol. 34, No. 4. (20 March 1951), pp. 451-462. by A. E. MIRSKY, H. RIS posted to no-tag by sbottani on 2009-09-29 14:16:59 as
	Altruistic DNA. About protective functions of the abundant DNA in the eukaryotic genome and its role in stabilizing genetic information. [My Copy] Biochemistry and molecular biology international, Vol. 41, No. 4. (April 1997), pp. 851-860. by L. I. Patrushev posted to no-tag by sbottani on 2009-09-29 14:16:14 as
	Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica [My Copy] Genome Research, Vol. 17, No. 7. (1 July 2007), pp. 992-1004. by Andrew J. Gentles, Matthew J. Wakefield, Oleksiy Kohany, et al.Wanjun Gu, Mark A. Batzer, David D. Pollock, Jerzy Jurka posted to no-tag by sbottani on 2009-09-29 14:11:09 as along with 3 people and 2 groups operon dchughes FMoncini G4ID Genetics-of-Gambling
	Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. [My Copy] Nature genetics, Vol. 33, No. 1. (January 2003), pp. 102-106. by Khalil Kashkush, Moshe Feldman, Avraham A. Levy posted to no-tag by sbottani on 2009-09-29 14:10:02 as along with 1 person bpcusack
	Genomic scrap yard: how genomes utilize all that junk. [My Copy] Gene, Vol. 259, No. 1-2. (23 December 2000), pp. 61-67. by W. Makałowski posted to no-tag by sbottani on 2009-09-29 14:05:45 as
	Genome canalization: the coevolution of transposable and interspersed repetitive elements with single copy DNA. [My Copy] Genetica, Vol. 86, No. 1-3. (1992), pp. 215-246. by R. M. von Sternberg, G. E. Novick, G. P. Gao, R. J. Herrera posted to no-tag by sbottani on 2009-09-29 14:04:51 as along with 1 person aprasad
	Eukaryotic transposable elements and genome evolution. [My Copy] Trends in genetics : TIG, Vol. 5, No. 4. (April 1989), pp. 103-107. by D. J. Finnegan posted to no-tag by sbottani on 2009-09-29 14:03:43 as
	Selfish DNA: the ultimate parasite. [My Copy] Nature, Vol. 284, No. 5757. (17 April 1980), pp. 604-607. by L. E. Orgel, F. H. Crick posted to no-tag by sbottani on 2009-09-29 14:02:23 as along with 1 person timflutre
	Selfish genes, the phenotype paradigm and genome evolution. [My Copy] Nature, Vol. 284, No. 5757. (17 April 1980), pp. 601-603. by W. F. Doolittle, C. Sapienza posted to no-tag by sbottani on 2009-09-29 14:01:01 as
	So much "junk" DNA in our genome. [My Copy] Brookhaven symposia in biology, Vol. 23 (1972), pp. 366-370. by S. Ohno posted to junk dna by sbottani on 2009-09-29 13:59:59 as along with 1 person and 1 group cisevol BergmanLab
	Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma. [My Copy] Biological reviews of the Cambridge Philosophical Society, Vol. 76, No. 1. (February 2001), pp. 65-101. by T. R. Gregory posted to c-value by sbottani on 2009-09-29 13:58:19 as along with 1 person brant
	The constancy of desoxyribose nucleic acid in plant nuclei. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 36, No. 11. (November 1950), pp. 643-654. by H. SWIFT posted to no-tag by sbottani on 2009-09-29 13:56:57 as
	Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects [My Copy] Trends in Genetics, Vol. 24, No. 8. (August 2008), pp. 390-397. by R. Veitia, S. Bottani, J. Birchler posted to dosage gene by sbottani on 2009-07-08 22:01:48 as along with 3 people guhjy marck bpcusack
	Conceptual modeling in systems biology fosters empirical findings: the mRNA lifecycle. [My Copy] PLoS ONE, Vol. 2, No. 9. (2007) by D. Dori, M. Choder posted to modeling by sbottani on 2009-05-20 07:01:16 as along with 1 person guhjy
	A fast, robust and tunable synthetic gene oscillator. [My Copy] Nature (29 October 2008) by Jesse Stricker, Scott Cookson, Matthew R R. Bennett, William H H. Mather, Lev S S. Tsimring, Jeff Hasty posted to biology genetic oscillations syncthetic by sbottani on 2009-04-14 15:26:40 as along with 12 people and 3 groups jasonpark1 austin margaritis lflorez stasaki stringertheory allysonlister joseph_x_zhou yxue jbhiatt grahamc dbikard BP205 bioNetwork_sysBio SynBioSys
	Increasing the efficiency of bacterial transcription simulations: when to exclude the genome without loss of accuracy [My Copy] BMC Bioinformatics, Vol. 9 (12 September 2008), 373. by Marco A. J. Iafolla, Guang Q. Dong, David R. Mcmillen posted to modelling models quantitative regulation by sbottani on 2008-12-15 10:10:24 as along with 2 people dolchan lptolik
	GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach [My Copy] BMC Bioinformatics, Vol. 9 (24 September 2008), 395. by Li Shen, Jie Liu, Wei Wang posted to logic organization regulation by sbottani on 2008-12-15 10:04:45 as along with 2 people ajgentles sjung
	Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e45. by Andrea Ciliberto, Fabrizio Capuani, John J. Tyson posted to no-tag by sbottani on 2008-12-10 23:33:44 as along with 3 people and 3 groups ajitkumar22 yonatanf kengg SynBioSys Centre de Recherches Interdisciplinaires Plantandetc
	Long term adaptation of a microbial population to a permanent metabolic constraint: overcoming thymineless death by experimental evolution of Escherichia coli. [My Copy] BMC biotechnology, Vol. 1 (2001) by V. A. de Crécy-Lagard, J. Bellalou, R. Mutzel, P. Marlière posted to biology synthetic by sbottani on 2008-12-08 15:03:25 as along with 1 person dbikard
	Bacterial physiology, regulation and mutational adaptation in a chemostat environment. [My Copy] Advances in microbial physiology, Vol. 53 (2008), pp. 169-229. by T. Ferenci posted to no-tag by sbottani on 2008-12-08 15:00:37 as
	Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), pp. 6688-6719. by Eugene V. Koonin, Yuri I. Wolf posted to genomics by sbottani on 2008-11-29 21:37:49 as along with 10 people and 2 groups pkm skembel Huub_odc druvus johanviklund Katje nklee barriot neils aramata Centre de Recherches Interdisciplinaires microbiology_nijmegen
	A role for E2F1 in the induction of ARF, p53, and apoptosis during thymic negative selection. [My Copy] Cell Growth Differ, Vol. 10, No. 12. (Dec 1999), pp. 829-38. by J. W. Zhu, D. Deryckere, F. X. Li, Y. Y. Wan, J. Degregori posted to animals antigen antigens apoptosis biosynthesis c57bl carrier cd4-positive cd8-positive cell cycle damage dexamethasone dna dna-binding doxorubicin factors gland govt inbred knockout mice non-us p14arf p53 phs protein proteins receptors research retroviridae superantigens support t-cell t-lymphocytes thymus transcription transgenic us viral by sbottani on 2008-10-23 12:48:58 as
	Direct sensing of heat and oxidation by Drosophila heat shock transcription factor. [My Copy] Mol Cell, Vol. 2, No. 1. (Jul 1998), pp. 101-108. by M. Zhong, A. Orosz, C. Wu posted to adaptation animals binding cells conformation cultured dna dna-binding drosophila expression factors gene heat hydrogen insect melanogaster oxidation-reduction oxidative peroxide physiological protein proteins regulation stress transcription by sbottani on 2008-10-23 12:48:58 as

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proteins	210
models	196
support	192
gene	187
govt	182
expression	177
genetic	167
regulation	156
transcription	138
non-us	134
research	125
protein	123
us	122
animals	118
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biological	102
cell	98
dna	95
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phs	88
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saccharomyces	79
coli	78
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binding	74
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molecular	64
rna	64
sequence	63
non-phs	58
cells	53
p53	53
signal	53
transduction	53
tumor	52
computer	51
acid	48
biology	46
feedback	46
regions	46
simulation	46
nuclear	45
promoter	45
suppressor	44
proto-oncogene	43
kinetics	42
mutation	41
messenger	40
analysis	35
cycle	35
data	35
base	33
repressor	33
sites	32
genome	27
mice	27
nucleic	27
c-mdm2	26
processes	26
conformation	25
mathematics	25
algorithms	24
amino	24
damage	24
phosphorylation	24
recombinant	24
cultured	23
operon	23
stochastic	23
trans-activation	23
line	22
computational	21
polymerase	21
regulator	21
biochemical	20
drosophila	20
kinases	20
plasmids	20
clocks	19
fusion	19
time	19
nucleus	18
theoretical	18
trans-activators	18
evolution	17
factor	17
luminescent	17
profiling	17
synthetic	17
databases	16
diffusion	16
fluorescent	16
human	16
oligonucleotide	16
transfection	16
array	15
apoptosis	14
chromosomes	14
eukaryotic	14
fluorescence	14
green	14
macromolecular	14
phenotype	14
protein-serine-threonine	14
biosynthesis	13
chain	13
endopeptidases	13
engineering	13
enzymes	13
physiology	13
regulatory	13
structure	13
systems	13
transport	13
insect	12
mapping	12
software	12
specificity	12
techniques	12
viral	12
and	11
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complexes	11
developmental	11
division	11
drug	11
endopeptidase	11
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ii	11
kinase	11
lac	11
melanogaster	11
neoplasms	11
statistical	11
study	11
substances	11
tertiary	11
bacteria	10
blotting	10
membrane	10
reaction	10
serine	10
system	10
body	9
chromatin	9
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cysteine	9
dna-directed	9
enzyme	9
gov	9
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lactose	9
microscopy	9
networks	9
peptide	9
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relationship	9
t	9
theory	9
adenosine	8
chemical	8
circadian	8
culture	8
down-regulation	8
mass	8
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multienzyme	8
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p14arf	8
patterning	8
polymerases	8
proteasome	8
radiation	8
rhythm	8
acids	7
amp	7
biophysics	7
cyclic	7
cytoplasm	7
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electrophoresis	7
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hela	7
homeodomain	7
metabolism	7
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post-translational	7
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tests	7
ubiquitin	7
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bacteriophage	6
beta-galactosidase	6
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dynamics	6
factual	6
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galactose	6
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hydrolases	6
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lambda	6
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neural	6
rats	6
restriction	6
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subtilis	6
thermodynamics	6
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biochemistry	5
chromatography	5
chromosome	5
disease	5
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frames	5
heat-shock	5
homology	5
hydrogen-ion	5
in	5
internet	5
ionizing	5
isopropyl	5
meiosis	5
nerve	5
net	5
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of	5
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plant	5
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point	5
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rays	5
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spectrum	5
structure-activity	5
thiogalactoside	5
triphosphatases	5
two-hybrid	5
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active	4
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arabidopsis	4
ataxia	4
atp-binding	4
b	4
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blood	4
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elegans	4
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nitrogen	4
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results	4
reverse	4
ribosomal	4
site-directed	4
situ	4
structural	4
substrate	4
superhelical	4
telangiectasia	4
temperature	4
theorem	4
transcriptase	4
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transporters	4
triphosphate	4
ubiquitins	4
up-regulation	4
variation	4
weight	4
zinc	4
alleles	3
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antigens	3
assay	3
bioreactors	3
capillary	3
carbon	3
carlo	3
clp	3
codon	3
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deoxyribonuclease	3
distribution	3
doxorubicin	3
electron	3
enzymologic	3
equipment	3
extracts	3
extramural	3
family	3
forecasting	3
gram-negative	3
half-life	3
heat	3
helix-loop-helix	3
hydrogen	3
i	3
iii	3
image	3
immunoblotting	3
inbred	3
induction	3
information	3
leucine	3
ligases	3
liquid	3
lysogeny	3
male	3
method	3
monte	3
multigene	3
multiple	3
nf-kappa	3
nih	3
oocytes	3
operator	3
oscillations	3
oscillometry	3
phosphoric	3
phosphoserine	3
physiological	3
pressure	3
probability	3
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small	3
social	3
spectrometry	3
stress	3
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tfii	3
tfiia	3
transfer	3
transforming	3
transgenic	3
ultraviolet	3
vibrio	3
acetylcysteine	2
adaptation	2
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animal	2
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arabinose	2
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c	2
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count	2
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cs	2
cyanobacteria	2
cyclin-dependent	2
dehydrogenase	2
development	2
diploidy	2
diseases	2
dominant	2
duplication	2
ecosystem	2
electrospray	2
electrostatics	2
embryo	2
entropy	2
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etoposide	2
factor-alpha	2
food	2
fourier	2
fractions	2
gamma	2
genetically	2
genotype	2
glycolysis	2
haploidy	2
high	2
history	2
hormones	2
hsp40	2
hsp70	2
ic	2
i-kappa	2
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inhibitor	2
interpretation	2
intestine	2
ionization	2
isoelectric	2
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linear	2
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modeling	2
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multiprotein	2
myc	2
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neurological	2
neurons	2
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northern	2
notch	2
oligodeoxyribonucleotides	2
oncogenes	2
p21	2
peptides	2
permeability	2
phylogeny	2
poisson	2
polyacrylamide	2
polymers	2
polymorphism	2
polyomavirus	2
progression	2
puces	2
quaternary	2
regulon	2
retroviridae	2
roots	2
s	2
schizosaccharomyces	2

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