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	Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae [My Copy] Genome Research, Vol. 16, No. 5. (May 2006), pp. 627-635. by Markus J. HerrgÃ¥rd, Baek-Seok Lee, Vasiliy Portnoy, Bernhard Palsson posted to transcription_factor regulation metabolic_reconstruction gene_expression by schwartzjmc on 2009-12-28 13:39:37 as along with 9 people and 3 groups michaelbarton JeremyZucker nickluscombe aswin kengg koller raiyar cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
	Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network [My Copy] Nature Biotechnology, Vol. 18, No. 12. (01 December 2000), pp. 1283-1286. by Simon Ostergaard, Lisbeth Olsson, Mark Johnston, Jens Nielsen posted to metabolic_engineering galactose by schwartzjmc on 2009-12-28 13:26:02 as
	Modeling Lactococcus lactis using a genome-scale flux model [My Copy] BMC Microbiology, Vol. 5, No. 1. (2005), 39. by Ana Oliveira, Jens Nielsen, Jochen Forster posted to metabolic_reconstruction fba bacteria by schwartzjmc on 2009-12-28 13:23:18 as along with 2 people and 3 groups bsmagic athleem Bioinformatics bioinplant JJJ
	Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways. [My Copy] PLoS biology, Vol. 6, No. 6. (17 June 2008), e146. by Chen-Shan S. Chin, Victor Chubukov, Emmitt R. Jolly, Joe DeRisi, Hao Li posted to regulation dynamic_model by schwartzjmc on 2009-12-22 16:49:41 as along with 7 people JeremyZucker Fournier34 djkt marck michaelbarton jjray zwang
	Metabolic profiling of the fission yeast S. pombe: quantification of compounds under different temperatures and genetic perturbation [My Copy] Mol. BioSyst., Vol. 6, No. 1. (2010), pp. 172-188. by Tomas Pluskal, Takahiro Nakamura, Alejandro Villar-Briones, Mitsuhiro Yanagida posted to thermodynamics metabolomics by schwartzjmc on 2009-12-18 16:58:47 as
	Boolean network approach to negative feedback loops of the p53 pathways: synchronized dynamics and stochastic limit cycles. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 1. (January 2009), pp. 119-132. by Hao Ge, Min Qian posted to logical_model apoptosis by schwartzjmc on 2009-12-17 13:54:35 as along with 1 person lptolik
	Applications of genome-scale metabolic reconstructions [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Matthew A. Oberhardt, Bernhard O. Palsson, Jason A. Papin posted to metabolic_reconstruction by schwartzjmc on 2009-12-17 11:06:50 as along with 5 people JeremyZucker pjmaybank michaelbarton arne pablocarb
	Localization and interaction of the proteins constituting the GAL genetic switch in Saccharomyces cerevisiae. [My Copy] Eukaryotic cell, Vol. 7, No. 12. (December 2008), pp. 2061-2068. by Raymond Wightman, Rachel Bell, Richard J. Reece posted to galactose by schwartzjmc on 2009-12-15 10:30:13 as
	Gene activation by dissociation of an inhibitor from a transcriptional activation domain. [My Copy] Molecular and cellular biology, Vol. 29, No. 20. (October 2009), pp. 5604-5610. by Fenglei Jiang, Benjamin R. Frey, Margery L. Evans, Jordan C. Friel, James E. Hopper posted to galactose by schwartzjmc on 2009-12-15 10:28:02 as
	SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 21. (1 November 2006), pp. 2704-2705. by Zhike Zi, Edda Klipp posted to software parameter by schwartzjmc on 2009-12-14 15:16:30 as along with 5 people cannin dullhunk jrbanga csgillespie Ronalddonald
	A quantitative model of transcription factor-activated gene expression. [My Copy] Nature structural & molecular biology, Vol. 15, No. 11. (12 November 2008), pp. 1192-1198. by Harold D. Kim, Erin K. O'Shea posted to gene_expression dynamic_model by schwartzjmc on 2009-12-03 12:32:54 as along with 4 people Petersarkies heliopais emptyhb barry
	The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools. [My Copy] Biophysical journal, Vol. 85, No. 1. (July 2003), pp. 16-26. by Iman Famili, Bernhard O. Palsson posted to stoichiometry null_space by schwartzjmc on 2009-12-02 17:00:46 as
	Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 7. (1 April 2005), pp. 1189-1193. by S. A. Rahman, P. Advani, R. Schunk, R. Schrader, Dietmar Schomburg posted to chemical_structure software flux by schwartzjmc on 2009-12-02 10:40:16 as
	Temperature dependency and temperature compensation in a model of yeast glycolytic oscillations. [My Copy] Biophysical chemistry, Vol. 106, No. 2. (1 November 2003), pp. 179-192. by Peter Ruoff, Melinda K. Christensen, Jana Wolf, Reinhart Heinrich posted to yeast mca dynamic_model control_coefficients by schwartzjmc on 2009-12-01 12:25:37 as
	Modeling gene expression with differential equations. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1999), pp. 29-40. by T. Chen, H. L. He, G. M. Church posted to gene_expression dynamic_model by schwartzjmc on 2009-11-26 11:53:36 as along with 3 people dadiamah nicholasflann pmendes
	Common gene expression strategies revealed by genome-wide analysis in yeast [My Copy] Genome Biology, Vol. 8, No. 10. (19 October 2007), R222. by Jose G. Martinez, Fernando G. Candelas, Jose P. Ortin posted to yeast gene_expression by schwartzjmc on 2009-11-26 11:43:17 as
	Computational systems biology. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210. by Hiroaki Kitano posted to systems_biology by schwartzjmc on 2009-11-25 15:54:41 as along with 26 people and 6 groups dadiamah jporternj tom4m3 schmidtm jaimie nedwards dansullivanblk ggallone daforerog reyez frohike irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc maburkitt shikin Jarman Lab dbk-lab TCR_Signaling SysbioMPI-TCells livingthing GeneGo
	Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production. [My Copy] Applied microbiology and biotechnology, Vol. 73, No. 4. (28 December 2006), pp. 887-894. by Qingzhao Wang, Xun Chen, Yudi Yang, Xueming Zhao posted to fba bacteria by schwartzjmc on 2009-11-25 15:50:54 as along with 3 people JeremyZucker eline_koers lylu
	Control analysis for autonomously oscillating biochemical networks. [My Copy] Biophysical journal, Vol. 82, No. 1 Pt 1. (January 2002), pp. 99-108. by Karin A. Reijenga, Hans V. Westerhoff, Boris N. Kholodenko, Jacky L. Snoep posted to mca by schwartzjmc on 2009-11-19 12:29:57 as
	Control analysis of glycolytic oscillations. [My Copy] Biophysical chemistry, Vol. 62, No. 1-3. (29 November 1996), pp. 15-24. by M. Bier, B. Teusink, B. N. Kholodenko, H. V. Westerhoff posted to yeast mca glycolysis by schwartzjmc on 2009-11-19 12:27:28 as
	Control analysis of metabolic networks. 1. Homogeneous functions and the summation theorems for control coefficients. [My Copy] European journal of biochemistry / FEBS, Vol. 174, No. 3. (15 June 1988), pp. 509-513. by C. Giersch posted to mca by schwartzjmc on 2009-11-19 12:21:47 as
	Caveat emptor: limitations of the automated reconstruction of metabolic pathways in Plasmodium [My Copy] Trends in Parasitology, Vol. 25, No. 1. (January 2009), pp. 37-43. by H. Ginsburg posted to plasmodium metabolic_reconstruction by schwartzjmc on 2009-11-19 11:58:16 as
	Blinded by the Light: The Growing Complexity of p53 [My Copy] Cell, Vol. 137, No. 3. (01 May 2009), pp. 413-431. by Karen H. Vousden, Carol Prives posted to regulation apoptosis by schwartzjmc on 2009-11-19 09:35:08 as along with 2 people TimRooney guhjy
	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 553-562. posted to regulation mrc dynamic_model by schwartzjmc on 2009-11-19 08:54:05 as along with 18 people samubernard mamitamura thegoose rdiaz rsaito guhjy hagechouchin443 gdb tonamswish burak YukaH coela mtagaya bertelsen xingxu TRHvidsten renatomilani antonkratz
	Modelling dynamic processes in yeast [My Copy] Yeast, Vol. 24, No. 11. (2007), pp. 943-959. by Edda Klipp posted to yeast systems_biology dynamic_model by schwartzjmc on 2009-11-18 14:45:37 as along with 2 people pmalkus Katieleonard
	Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures. [My Copy] Nature genetics, Vol. 40, No. 1. (23 January 2008), pp. 113-117. by Daniela Delneri, David C. Hoyle, Konstantinos Gkargkas, et al.Emma J. Cross, Bharat Rash, Leo Zeef, Hui-Sun S. Leong, Hazel M. Davey, Andrew Hayes, Douglas B. Kell, Gareth W. Griffith, Stephen G. Oliver posted to yeast fba by schwartzjmc on 2009-11-16 11:40:47 as along with 4 people and 1 group JeremyZucker Annab michaelbarton dbk dbk-lab
	Sympatric natural Saccharomyces cerevisiae and S. paradoxus populations have different thermal growth profiles. [My Copy] FEMS yeast research, Vol. 4, No. 4-5. (January 2004), pp. 521-525. by Joseph Y. Sweeney, Heidi A. Kuehne, Paul D. Sniegowski posted to yeast population_genetics by schwartzjmc on 2009-11-16 11:37:39 as along with 1 person dbensasson
	Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. [My Copy] FEMS yeast research, Vol. 1, No. 4. (January 2002), pp. 299-306. by Paul D. Sniegowski, Peter G. Dombrowski, Ethan Fingerman posted to yeast population_genetics by schwartzjmc on 2009-11-16 11:28:58 as
	The nature of systems biology. [My Copy] Trends in microbiology, Vol. 15, No. 1. (17 January 2007), pp. 45-50. by Frank J. Bruggeman, Hans V. Westerhoff posted to systems_biology by schwartzjmc on 2009-11-13 10:47:54 as along with 13 people and 5 groups babakap alorena eldan jwm jmeppley wnpx rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
	The Automation of Science [My Copy] Science, Vol. 324, No. 5923. (3 April 2009), pp. 85-89. by Ross D. King, Jem Rowland, Stephen G. Oliver, et al.Michael Young, Wayne Aubrey, Emma Byrne, Maria Liakata, Magdalena Markham, Pinar Pir, Larisa N. Soldatova, Andrew Sparkes, Kenneth E. Whelan, Amanda Clare posted to yeast logical_model fba by schwartzjmc on 2009-11-11 11:33:28 as along with 60 people and 2 groups agomez leliavski ngehlenborg yuifu singhsh Sergey_gerbek yyfwuhan antonkratz CulCog ckai1 jcaddy thegoose tommcdonagh tonamswish qwermish axeltan ocs TobiasAbenius CameronNeylon guhjy davidcsterratt bcondon Scis0000002 kevinemamy TRHvidsten emiko Zephyrus arne muraken vagoskar katiehumphry Effie robertknight acrmartins psique dbikard tyrell_turing Tomste renatomilani subhacom druvus ramanuja sen_cheng coela VGreiff hagechouchin443 Benja austin stober rdiaz Fortran napvasconcelos mikel_egana allysonlister dullhunk fgibson pkonings JeremyZucker jbhiatt tmmurali NaCTeM MetabolicModeling
	An improved algorithm for stoichiometric network analysis: theory and applications. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 7. (1 April 2005), pp. 1203-1210. by R. Urbanczik, C. Wagner posted to em by schwartzjmc on 2009-11-06 15:05:51 as
	Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns [My Copy] Genome Research, Vol. 19, No. 10. (October 2009), pp. 1872-1883. by Christoph Kaleta, LuÃs F. de Figueiredo, Stefan Schuster posted to em by schwartzjmc on 2009-11-06 14:26:10 as along with 3 people and 1 group daveGerrard TRHvidsten fpattyn Neuroblastoma
	Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 18. (15 September 2008), pp. 2044-2050. by Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr posted to logical_model fba bacteria by schwartzjmc on 2009-11-06 14:14:22 as along with 6 people pjmaybank abhishek_tiwari kalvala guhjy Ema nuin
	Systems Biology Reveals New Strategies for Personalizing Cancer Medicine and Confirms the Role of PTEN in Resistance to Trastuzumab [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6713-6720. by Dana Faratian, Alexey Goltsov, Galina Lebedeva, et al.Anatoly Sorokin, Stuart Moodie, Peter Mullen, Charlene Kay, In H. Um, Simon Langdon, Igor Goryanin, David J. Harrison posted to mrc dynamic_model drug by schwartzjmc on 2009-11-04 18:50:18 as along with 4 people karthikraman bertelsen ericrpaquet frohike
	A Genome-scale Metabolic Model of Arabidopsis thaliana and Some of its Properties [My Copy] Plant Physiol. (15 September 2009), pp.109.141267. by Mark G. Poolman, Laurent Miguet, Lee J. Sweetlove, David A. Fell posted to plant metabolic_reconstruction arabidopsis by schwartzjmc on 2009-11-04 17:18:55 as along with 1 person pjmaybank
	Assessing the dynamics of nuclear glucocorticoid-receptor complex: adding flexibility to gene expression modeling. [My Copy] Journal of pharmacokinetics and pharmacodynamics, Vol. 34, No. 3. (June 2007), pp. 333-354. by Anasuya Hazra, Debra C. DuBois, Richard R. Almon, William J. Jusko posted to dynamic_model pharmacokinetics glucocorticoid_receptor by schwartzjmc on 2009-11-03 10:03:32 as
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to metabolic_reconstruction bacteria by schwartzjmc on 2009-10-19 15:39:28 as along with 15 people freesci robfsouza michaelbarton venancio apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl roys
	Drug-therapy networks and the prediction of novel drug targets [My Copy] Journal of Biology, Vol. 7, No. 6. (31 July 2008), 20. by Zoltan Spiro, Istvan Kovacs, Peter Csermely posted to drug by schwartzjmc on 2009-10-15 15:07:29 as
	SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 39. by Andreas Drager, Nadine Hassis, Jochen Supper, Adrian Schroder, Andreas Zell posted to dynamic_model software by schwartzjmc on 2009-10-04 16:23:35 as along with 3 people sivakumarkc guhjy bootsy
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted to topology by schwartzjmc on 2009-10-01 13:52:42 as along with 23 people and 4 groups tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang carlk RobMills Diego_Prada marcio streptomyces dbk-lab kdl Bioinformatics
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted to topology systems_biology by schwartzjmc on 2009-10-01 13:51:53 as along with 40 people and 10 groups daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais shikin hryk streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to topology by schwartzjmc on 2009-10-01 13:51:34 as along with 73 people and 10 groups kubyaddi antonkratz jaspervoskuilen Sergey_gerbek nurban balabu ocs mjoach makrehchi poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim complex networks GEB Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
	Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 795-806. by Paola Picotti, Bernd Bodenmiller, Lukas N. Mueller, Bruno Domon, Ruedi Aebersold posted to yeast proteomics by schwartzjmc on 2009-09-09 16:21:19 as along with 2 people absterga brianb
	New strategy for the representation and the integration of biomolecular knowledge at a cellular scale. [My Copy] Nucleic Acids Res, Vol. 32, No. 12. (2004), pp. 3581-3589. by Roland Barriot, Jérôme Poix, Alexis Groppi, et al.Aurélien Barré, Nicolas Goffard, David Sherman, Isabelle Dutour, Antoine de Daruvar posted to integration by schwartzjmc on 2009-09-04 15:46:51 as along with 1 person greg
	From minimal signed circuits to the dynamics of Boolean regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. i220-226. by Elisabeth Remy, Paul Ruet posted to stability regulation cycle by schwartzjmc on 2009-08-30 10:42:08 as
	Functional States of the genome-scale Escherichia coli transcriptional regulatory system. [My Copy] PLoS computational biology, Vol. 5, No. 6. (5 June 2009), e1000403. by Erwin P. Gianchandani, Andrew R. Joyce, Bernhard Ø. Palsson, Jason A. Papin posted to topology regulation bacteria by schwartzjmc on 2009-08-14 17:42:00 as along with 3 people roys TRHvidsten trfield
	Subnetwork analysis reveals dynamic features of complex (bio)chemical networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 49. (4 December 2007), pp. 19175-19180. by Carsten Conradi, Dietrich Flockerzi, Jörg Raisch, Jörg Stelling posted to dynamic_model topology stability em by schwartzjmc on 2009-08-14 17:03:18 as along with 3 people zwang roys mclarenv
	The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Sergio Grimbs, Joachim Selbig, Sascha Bulik, Hermann-Georg G. Holzhütter, Ralf Steuer posted to dynamic_model topology stability regulation by schwartzjmc on 2009-08-14 16:58:47 as along with 5 people and 1 group agomez JeremyZucker cjeans zwang Ema MetabolicModeling
	A Role for Casein Kinase 2 in the Mechanism Underlying Circadian Temperature Compensation [My Copy] Cell, Vol. 137, No. 4. (15 May 2009), pp. 749-760. by Arun Mehra, Mi Shi, Christopher L. Baker, Hildur V. Colot, Jennifer J. Loros, Jay C. Dunlap posted to neurospora circadian by schwartzjmc on 2009-08-12 17:21:54 as
	Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 7. by Tobias Christensen, Ana Oliveira, Jens Nielsen posted to logical_model glycolysis regulation yeast by schwartzjmc on 2009-08-06 12:46:35 as along with 2 people ptrobajo arne

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