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	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to binding chromatin dna protein transcription by scjparker on 2009-08-04 02:57:20 as along with 12 people and 2 groups bsamal venancio aalibes fenghezi idonaldson daveGerrard megraw maximilianh djkt isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by ENCODE Project Consortium, Ewan Birney, John A. Stamatoyannopoulos, et al.Anindya Dutta, Roderic Guigó, Thomas R. Gingeras, Elliott H. Margulies, Zhiping Weng, Michael Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christoph M. Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A. Greenbaum, Robert M. Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, Nigel P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D. James, Brett E. Johnson, Ericka M. Johnson, Tristan T. Frum, Elizabeth R. Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C. Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William S. Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S. Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C. Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K. G. Srinivasan, Wing-Kin K. Sung, Hong Sain S. Ooi, Kuo Ping P. Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L. Tress, Alfonso Valencia, Siew Woh W. Choo, Chiou Yu Y. Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G. Clark, James B. Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S. Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M. Myers, Jane Rogers, Peter F. Stadler, Todd M. Lowe, Chia-Lin L. Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E. Antonarakis, Yutao Fu, Eric D. Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Gregory M. Cooper, George Asimenos, Colin N. Dewey, Minmei Hou, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R. Zhang, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D. Trinklein, Zhengdong D. Zhang, Leah Barrera, Rhona Stuart, David C. King, Adam Ameur, Stefan Enroth, Mark C. Bieda, Jonghwan Kim, Akshay A. Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B. Vega, Charlie W. Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J. Oberley, David Inman, Michael A. Singer, Todd A. Richmond, Kyle J. Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Cordelia F. Langford, David A. Nix, Ghia Euskirchen, Stephen Hartman, Alexander E. Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon H. Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K. Glass, M. Geoff Rosenfeld, Shelley Force F. Aldred, Sara J. Cooper, Anason Halees, Jane M. Lin, Hennady P. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yong Yu, Yijun Ruan, Vishwanath R. Iyer, Roland D. Green, Claes Wadelius, Peggy J. Farnham, Bing Ren, Rachel A. Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S. Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M. Kuhn, Donna Karolchik, Lluis Armengol, Christine P. Bird, Paul I. de Bakker, Andrew D. Kern, Nuria Lopez-Bigas, Joel D. Martin, Barbara E. Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B. Hallgrímsdóttir, Julian Huppert, Michael C. Zody, Gonçalo R. Abecasis, Xavier Estivill, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J. de Jong posted to binding chromatin cpg dna enhancers evolution factor gc genomics prediction protein research structure variation by scjparker on 2009-05-30 14:38:49 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr chad_davis kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	Detection of DNA structural motifs in functional genomic elements. [My Copy] Genome Res, Vol. 17, No. 6. (June 2007), pp. 940-946. by J. A. Greenbaum, S. C. Parker, T. D. Tullius posted to binding chromatin cpg dna gc prediction research structure by scjparker on 2009-05-30 14:36:45 as along with 4 people and 1 group akundaje wowalz athma ghattem Bioinformatics
	The relationship between fine scale DNA structure, gc content, and functional elements in 1% of the human genome. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 20 (2008), pp. 199-211. by S. C. Parker, E. H. Margulies, T. D. Tullius posted to cpg dna gc genomics prediction research structure by scjparker on 2009-05-30 14:32:45 as
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to dna enhancers evolution genomics prediction research structure by scjparker on 2009-05-30 14:21:58 as along with 40 people and 6 groups provero rsaito daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Quantification of the yeast transcriptome by single-molecule sequencing [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 652-658. by Doron Lipson, Tal Raz, Alix Kieu, et al.Daniel R. Jones, Eldar Giladi, Edward Thayer, John F. Thompson, Stan Letovsky, Patrice Milos, Marie Causey posted to rna sequencing transcription by scjparker on 2009-07-16 22:49:50 as along with 9 people pmalkus venancio roys psique xingxu guhjy shikin fenghezi neils
	Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 28. (14 July 2009), pp. 11667-11672. by Ahmad M. Khalil, Mitchell Guttman, Maite Huarte, et al.Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E. Bernstein, Alexander van Oudenaarden, Aviv Regev, Eric S. Lander, John L. Rinn posted to binding chromatin rna by scjparker on 2009-07-16 22:48:47 as along with 8 people and 1 group frohike jwfoley inesdesantiago xianjun daforerog clearbluespring wsjames fenghezi Oxford Virology
	Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability [My Copy] Science (New York, N.Y.) In Science, Vol. 324, No. 5931. (29 May 2009), pp. 1213-1216. by Marcelo D. Vinces, Matthieu Legendre, Marina Caldara, Masaki Hagihara, Kevin J. Verstrepen posted to chromatin dna evolution genomics repeats transcription by scjparker on 2009-05-30 14:20:34 as along with 15 people and 1 group n00c xianjun absterga orzenil gjuggler bpcusack pkonings cisevol fenghezi cambray APRegier antonkratz JustinCrocker leliavski jjray cis-regulatory-evolution
	CROC: Finding Chromosomal Clusters in Eukaryotic Genomes [My Copy] Bioinformatics (23 April 2009), btp248. by Miguel Pignatelli, Florenci Serras, Andres Moya, Roderic Guigo, Montserrat Corominas posted to dna evolution genomics research by scjparker on 2009-05-28 18:10:23 as along with 1 person operon
	Identifying novel constrained elements by exploiting biased substitution patterns [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i54-62. by Manuel Garber, Mitchell Guttman, Michele Clamp, Michael C. Zody, Nir Friedman, Xiaohui Xie posted to dna evolution genomics research by scjparker on 2009-05-28 17:47:39 as along with 1 person djkt
	Predicting functionality of protein-DNA interactions by integrating diverse evidence [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i137-144. by Duygu Ucar, Andreas Beyer, Srinivasan Parthasarathy, Christopher T. Workman posted to binding dna factor genomics prediction protein research transcription by scjparker on 2009-05-28 17:46:21 as along with 3 people dquest ashishanand TRHvidsten
	Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000112. by Deanna M. Church, Leo Goodstadt, LaDeana W. Hillier, et al.Michael C. Zody, Steve Goldstein, Xinwe She, Carol J. Bult, Richa Agarwala, Joshua L. Cherry, Michael DiCuccio, Wratko Hlavina, Yuri Kapustin, Peter Meric, Donna Maglott, Zoë Birtle, Ana C. Marques, Tina Graves, Shiguo Zhou, Brian Teague, Konstantinos Potamousis, Christopher Churas, Michael Place, Jill Herschleb, Ron Runnheim, Daniel Forrest, James Amos-Landgraf, David C. Schwartz, Ze Cheng, Kerstin Lindblad-Toh, Evan E. Eichler, Chris P. Ponting, The Mouse Genome Sequencing Consortium posted to genomics mouse research by scjparker on 2009-05-27 15:38:02 as along with 4 people ocs aprasad djkt dchughes
	A Broken Trust: Lessons from the Vaccine–Autism Wars [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000114. by Liza Gross posted to autism commentary research vaccine by scjparker on 2009-05-27 15:30:35 as along with 9 people and 1 group Zephyrus rdiaz bethannmclaughlin emptyhb nuin silberbauer barry dchughes neils McCammon
	Recognition of AT-Rich DNA Binding Sites by the MogR Repressor [My Copy] Vol. 17, No. 5. (13 May 2009), pp. 769-777. by Aimee Shen, Darren E. Higgins, Daniel Panne posted to dna factor structure transcription by scjparker on 2009-05-12 23:04:57 as
	Histone modifications at human enhancers reflect global cell-type-specific gene expression [My Copy] Nature, Vol. 459, No. 7243. (18 March 2009), pp. 108-112. by Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, et al.Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren posted to enhancers genomics by scjparker on 2009-05-12 22:03:28 as along with 17 people and 2 groups rpatward akakak suizifish RyuOgawa inesdesantiago gdb djkt tonamswish t08681mn akundaje leliavski fenghezi TRHvidsten humburg frohike idonaldson sebastien_vigneau Epigenetics CTCF
	Closing gaps in the human genome using sequencing by synthesis [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R60. by Manuel Garber, Michael Zody, Harindra Arachchi, et al.Aaron Berlin, Sante Gnerre, Lisa Green, Niall Lennon, Chad Nusbaum posted to dna genomics sequencing by scjparker on 2009-06-03 04:05:02 as along with 5 people and 1 group n00c APRegier ppgardne kiekyon jasontsai Journal picks
	Predicting and understanding the stability of G-quadruplexes [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i374-1382. by Oliver Stegle, Linda Payet, Jean-Louis Mergny, David J. Mackay, Julian H. Leon posted to dna prediction research structure transcription by scjparker on 2009-05-28 18:01:56 as
	Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i348-355. by Shai Lubliner, Eran Segal posted to binding chromatin dna genomics nucleosomes prediction by scjparker on 2009-05-28 17:59:26 as along with 2 people roys humburg
	BIPA: a database for protein-nucleic acid interaction in 3D structures. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1559-1560. by S. Lee, T. L. Blundell posted to binding dna factor protein research structure by scjparker on 2009-05-28 18:13:59 as along with 3 people higueruelo medic0747 phoenixzxl
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to binding dna evolution factor genomics prediction protein research by scjparker on 2009-05-28 17:56:30 as along with 9 people and 3 groups bsamal dquest Stew marti Lombardo_7 megraw operon nuin AlexBateman EisenLab Bioinformatics - CRUK Journal picks
	Autism genome-wide copy number variation reveals ubiquitin and neuronal genes. [My Copy] Nature, Vol. 459, No. 7246. (28 May 2009), pp. 569-573. by Joseph T. Glessner, Kai Wang, Guiqing Cai, et al.Olena Korvatska, Cecilia E. Kim, Shawn Wood, Haitao Zhang, Annette Estes, Camille W. Brune, Jonathan P. Bradfield, Marcin Imielinski, Edward C. Frackelton, Jennifer Reichert, Emily L. Crawford, Jeffrey Munson, Patrick M. Sleiman, Rosetta Chiavacci, Kiran Annaiah, Kelly Thomas, Cuiping Hou, Wendy Glaberson, James Flory, Frederick Otieno, Maria Garris, Latha Soorya, Lambertus Klei, Joseph Piven, Kacie J. Meyer, Evdokia Anagnostou, Takeshi Sakurai, Rachel M. Game, Danielle S. Rudd, Danielle Zurawiecki, Christopher J. McDougle, Lea K. Davis, Judith Miller, David J. Posey, Shana Michaels, Alexander Kolevzon, Jeremy M. Silverman, Raphael Bernier, Susan E. Levy, Robert T. Schultz, Geraldine Dawson, Thomas Owley, William M. McMahon, Thomas H. Wassink, John A. Sweeney, John I. Nurnberger, Hilary Coon, James S. Sutcliffe, Nancy J. Minshew, Struan F. Grant, Maja Bucan, Edwin H. Cook, Joseph D. Buxbaum, Bernie Devlin, Gerard D. Schellenberg, Hakon Hakonarson posted to autism disease genomics variation by scjparker on 2009-05-28 14:14:07 as along with 8 people rdiaz daforerog pkonings fenghezi dswan neils jbhiatt psique
	Common genetic variants on 5p14.1 associate with autism spectrum disorders. [My Copy] Nature, Vol. 459, No. 7246. (28 May 2009), pp. 528-533. by Kai Wang, Haitao Zhang, Deqiong Ma, et al.Maja Bucan, Joseph T. Glessner, Brett S. Abrahams, Daria Salyakina, Marcin Imielinski, Jonathan P. Bradfield, Patrick M. Sleiman, Cecilia E. Kim, Cuiping Hou, Edward Frackelton, Rosetta Chiavacci, Nagahide Takahashi, Takeshi Sakurai, Eric Rappaport, Clara M. Lajonchere, Jeffrey Munson, Annette Estes, Olena Korvatska, Joseph Piven, Lisa I. Sonnenblick, Ana I. Alvarez Retuerto, Edward I. Herman, Hongmei Dong, Ted Hutman, Marian Sigman, Sally Ozonoff, Ami Klin, Thomas Owley, John A. Sweeney, Camille W. Brune, Rita M. Cantor, Raphael Bernier, John R. Gilbert, Michael L. Cuccaro, William M. McMahon, Judith Miller, Matthew W. State, Thomas H. Wassink, Hilary Coon, Susan E. Levy, Robert T. Schultz, John I. Nurnberger, Jonathan L. Haines, James S. Sutcliffe, Edwin H. Cook, Nancy J. Minshew, Joseph D. Buxbaum, Geraldine Dawson, Struan F. Grant, Daniel H. Geschwind, Margaret A. Pericak-Vance, Gerard D. Schellenberg, Hakon Hakonarson posted to autism disease dna genomics variation by scjparker on 2009-05-28 14:11:12 as along with 6 people daforerog pkonings fenghezi jbhiatt psique wimufi

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