CiteULike: sebastien_vigneau's binding-site [8 articles]

Diversity and complexity in DNA recognition by transcription factors.

Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723.

by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk

Distinguishing direct versus indirect transcription factor-DNA interactions.

Genome research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100.

by Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk

posted to transcription-factor transcription nucleosome-positioning nucleosome indirect direct chip-chip binding-site binding-motif by sebastien_vigneau on 2009-11-30 16:18:14 as read

along with 13 people roys oannes nklee djkt vingron venancio owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike

Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder

DNA Res, Vol. 16, No. 5. (1 October 2009), pp. 261-273.

by Alexei A. Sharov, Minoru S. H. Ko

posted to word transcription-factor tf motif k-word ctcf consensus binding-site binding-motif binding by sebastien_vigneau on 2009-10-28 22:59:36 as

along with 3 people and 2 groups nklee operon polivares CTCF BergmanLab

DNA binding site sequence directs glucocorticoid receptor structure and activity.

Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 407-410.

by Sebastiaan H. Meijsing, Miles A. Pufall, Alex Y. So, Darren L. Bates, Lin Chen, Keith R. Yamamoto

posted to binding-site glucocorticoid-receptor gr by sebastien_vigneau on 2009-06-29 21:59:32 as read

along with 7 people and 1 group Annab JustinCrocker fenghezi absterga bpcusack jbhiatt djkt BenosLab

Enhanced position weight matrices using mixture models.

Bioinformatics (Oxford, England), Vol. 21 Suppl 1 (June 2005)

by S. Hannenhalli, L. S. Wang

posted to binding-motif binding-site positional-weight-matrix pwm subclass by sebastien_vigneau on 2009-06-29 21:57:20 as read

Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci.

The Journal of biological chemistry, Vol. 282, No. 46. (16 November 2007), pp. 33336-33345.

by M. Renda, I. Baglivo, B. Burgess-Beusse, et al.S. Esposito, R. Fattorusso, G. Felsenfeld, P. V. Pedone

posted to affinity assymetry binding binding-site cpg cpg-methylation ctcf dna-methylation h19 igf2 methylation orientation zing-finger by sebastien_vigneau on 2009-06-18 23:25:55 as read

along with 1 person and 1 group clearbluespring CTCF

YY1's longer DNA-binding motifs.

Genomics, Vol. 93, No. 2. (February 2009), pp. 152-158.

by Jeong do Kim, Joomyeong Kim

posted to binding-site imprinting inactivation peg3 x-chromosome xist yy1 by sebastien_vigneau on 2009-02-11 20:45:14 as read

along with 2 people and 3 groups agonzale absterga X-chromosome inactivation Imprinting Epigenetics

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218.

by Jason Gertz, Eric D. Siggia, Barak A. Cohen

	Diversity and complexity in DNA recognition by transcription factors. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to transcription-factor transcription binding-site binding-motif by sebastien_vigneau on 2009-11-30 16:20:36 as along with 23 people and 1 group nklee sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys emptyhb tmmurali RockmanLab
	Distinguishing direct versus indirect transcription factor-DNA interactions. [My Copy] Genome research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk posted to transcription-factor transcription nucleosome-positioning nucleosome indirect direct chip-chip binding-site binding-motif by sebastien_vigneau on 2009-11-30 16:18:14 as along with 13 people roys oannes nklee djkt vingron venancio owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike
	Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder [My Copy] DNA Res, Vol. 16, No. 5. (1 October 2009), pp. 261-273. by Alexei A. Sharov, Minoru S. H. Ko posted to word transcription-factor tf motif k-word ctcf consensus binding-site binding-motif binding by sebastien_vigneau on 2009-10-28 22:59:36 as along with 3 people and 2 groups nklee operon polivares CTCF BergmanLab
	DNA binding site sequence directs glucocorticoid receptor structure and activity. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 407-410. by Sebastiaan H. Meijsing, Miles A. Pufall, Alex Y. So, Darren L. Bates, Lin Chen, Keith R. Yamamoto posted to binding-site glucocorticoid-receptor gr by sebastien_vigneau on 2009-06-29 21:59:32 as along with 7 people and 1 group Annab JustinCrocker fenghezi absterga bpcusack jbhiatt djkt BenosLab
	Enhanced position weight matrices using mixture models. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1 (June 2005) by S. Hannenhalli, L. S. Wang posted to binding-motif binding-site positional-weight-matrix pwm subclass by sebastien_vigneau on 2009-06-29 21:57:20 as
	Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci. [My Copy] The Journal of biological chemistry, Vol. 282, No. 46. (16 November 2007), pp. 33336-33345. by M. Renda, I. Baglivo, B. Burgess-Beusse, et al.S. Esposito, R. Fattorusso, G. Felsenfeld, P. V. Pedone posted to affinity assymetry binding binding-site cpg cpg-methylation ctcf dna-methylation h19 igf2 methylation orientation zing-finger by sebastien_vigneau on 2009-06-18 23:25:55 as along with 1 person and 1 group clearbluespring CTCF
	YY1's longer DNA-binding motifs. [My Copy] Genomics, Vol. 93, No. 2. (February 2009), pp. 152-158. by Jeong do Kim, Joomyeong Kim posted to binding-site imprinting inactivation peg3 x-chromosome xist yy1 by sebastien_vigneau on 2009-02-11 20:45:14 as along with 2 people and 3 groups agonzale absterga X-chromosome inactivation Imprinting Epigenetics
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to binding-site promoter transcription-factor by sebastien_vigneau on 2009-01-08 21:51:55 as along with 17 people and 4 groups Vincent_Rouilly pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh roys dpollard druvus pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen

sebastien_vigneau's binding-site [8 articles] Export

sebastien_vigneau's tags

x-chromosome	634
inactivation	590
ctcf	156
imprinting	103
evolution	85
methylation	77
xist	63
stemness	61
chromatin	57
h19	54
rna	51
transcription	50
mirna	47
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epigenetics	44
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germline	34
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pcr	34
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technology	30
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development	22
meiosis	22
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nuclear-localization	20
enhancer	20
drosophila	20
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review	19
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imaging	17
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pgc	14
chip-chip	14
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