semin's library 269 articles Export

	Allosteric modulation of DNA by small molecules [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 32. (11 August 2009), pp. 13175-13179. by David M. Chenoweth, Peter B. Dervan posted to no-tag by semin on 2009-08-24 12:51:42 as along with 1 person ubcg08l
	Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3234-3240. by D. Park, S. Lee, D. Bolser, et al.M. Schroeder, M. Lappe, D. Oh, J. Bhak posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP) [My Copy] Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1138-1150. by Wan Kim, Dan Bolser, Jong Park posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. [My Copy] Bioinformatics, Vol. 16, No. 2. (February 2000), pp. 117-124. by S. A. Teichmann, C. Chothia, G. M. Church, J. Park posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	PSIbase: a database of Protein Structural Interactome map (PSIMAP) [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543. by Sungsam Gong, Giseok Yoon, Insoo Jang, et al.Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Quantification of the variation in percentage identity for protein sequence alignments [My Copy] BMC Bioinformatics, Vol. 7 (19 September 2006), 415. by Ps Raghava, Geoffrey Barton posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	A simple physical model for the prediction and design of protein-DNA interactions. [My Copy] J Mol Biol, Vol. 344, No. 1. (12 November 2004), pp. 59-70. by J. J. Havranek, C. M. Duarte, D. Baker posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. [My Copy] Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 477-486. by S. Ahmad, M. M. Gromiha, A. Sarai posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Knowledge-Based Elastic Potentials for Docking Drugs or Proteins with Nucleic Acids [My Copy] Biophys. J., Vol. 88, No. 2. (1 February 2005), pp. 1166-1190. by Wei Ge, Bohdan Schneider, Wilma Olson posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity. [My Copy] J Mol Biol, Vol. 320, No. 5. (26 July 2002), pp. 991-1009. by N. M. Luscombe, J. M. Thornton posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Protein-DNA recognition patterns and predictions. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 34 (2005), pp. 379-398. by A. Sarai, H. Kono posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains. [My Copy] J Mol Biol, Vol. 327, No. 4. (4 April 2003), pp. 781-796. by A. C. Cheng, W. W. Chen, C. N. Fuhrmann, A. D. Frankel posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Rotamer libraries in the 21st century. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 4. (August 2002), pp. 431-440. by R. L. Dunbrack posted to file-import-09-06-23 by semin on 2009-06-23 20:52:35 as
	Structural features of protein-nucleic acid recognition sites. [My Copy] Biochemistry, Vol. 38, No. 7. (16 February 1999), pp. 1999-2017. by K. Nadassy, S. J. Wodak, J. Janin posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure. [My Copy] Proteins, Vol. 61, No. 2. (1 November 2005), pp. 258-271. by D. Lejeune, N. Delsaux, B. Charloteaux, A. Thomas, R. Brasseur posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. [My Copy] Biophys J, Vol. 63, No. 3. (September 1992), pp. 751-759. by H. M. Berman, W. K. Olson, D. L. Beveridge, et al.J. Westbrook, A. Gelbin, T. Demeny, S. H. Hsieh, A. R. Srinivasan, B. Schneider posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	The role of water in protein-DNA recognition. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 343-361. by B. Jayaram, T. Jain posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	Themes in RNA-protein recognition. [My Copy] J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 255-270. by D. E. Draper posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	Wet and dry interfaces: the role of solvent in protein-protein and protein-DNA recognition. [My Copy] Structure, Vol. 7, No. 12. (15 December 1999) by J. Janin posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	Review: Protein Design--Where We Were, Where We Are, Where We're Going [My Copy] Journal of Structural Biology, Vol. 134, No. 2-3. (May 2001), pp. 269-281. by Navin Pokala, Tracy Handel posted to file-import-09-06-23 by semin on 2009-06-23 20:52:34 as
	De novo protein design: fully automated sequence selection. [My Copy] Science, Vol. 278, No. 5335. (3 October 1997), pp. 82-87. by B. I. Dahiyat, S. L. Mayo posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	Protein structure: geometry, topology and classification [My Copy] Reports on Progress in Physics, Vol. 64, No. 4. (2001), pp. 517-590. by William Taylor, Alex May, Nigel Brown, András Aszódi posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	Electrostatics and dynamics of proteins [My Copy] Reports of Progress in Physics, Vol. 66 (2003), pp. 737-787. by T. Simonson posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	Physical aspects of protein dynamics [My Copy] Reports on Progress in Physics, Vol. 66, No. 2. (2003), pp. 103-129. by Fritz Parak posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. [My Copy] Genomics, Vol. 1, No. 2. (October 1987), pp. 174-181. by E. S. Lander, P. Green, J. Abrahamson, et al.A. Barlow, M. J. Daly, S. E. Lincoln, L. Newburg posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by W. Kabsch, C. Sander posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	Is the evolution of insulin Darwinian or due to selectively neutral mutation? [My Copy] Nature, Vol. 257, No. 5523. (18 September 1975), pp. 197-203. by T. L. Blundell, S. P. Wood posted to file-import-09-06-23 by semin on 2009-06-23 20:52:33 as
	Structural evidence for gene duplication in the evolution of the acid proteases. [My Copy] Nature, Vol. 271, No. 5646. (16 February 1978), pp. 618-621. by J. Tang, M. N. James, I. N. Hsu, J. A. Jenkins, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Gene and protein structure of a [beta]-crystallin polypeptide in murine lens: relationship of exons and structural motifs [My Copy] Nature, Vol. 302, No. 5906. (24 March 1983), pp. 310-315. by George Inana, Joram Piatigorsky, Barbara Norman, Christine Slingsby, Tom Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Three-dimensional structure, specificity and catalytic mechanism of renin [My Copy] Nature, Vol. 304, No. 5923. (21 July 1983), pp. 273-275. by Tom Blundell, Bancinyane Sibanda, Laurence Pearl posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Solvent-induced distortions and the curvature of [alpha]-helices [My Copy] Nature, Vol. 306, No. 5940. (17 November 1983), pp. 281-283. by Tom Blundell, David Barlow, Nivedita Borkakoti, Janet Thornton posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Evolution and the tertiary structure of proteins. [My Copy] Annu Rev Biophys Bioeng, Vol. 13 (1984), pp. 453-492. by M. Bajaj, T. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Evolution in the insulin family: molecular clocks that tell the wrong time. [My Copy] Biochem Soc Symp, Vol. 49 (1984), pp. 45-54. by M. Bajaj, T. Blundell, S. Wood posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Structural and evolutionary analysis of HLA-D-region products [My Copy] Nature, Vol. 310, No. 5974. (19 July 1984), pp. 235-238. by P. Travers, T. L. Blundell, M. J. E. Sternberg, W. F. Bodmer posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Knowledge-based prediction of protein structures and the design of novel molecules. [My Copy] Nature, Vol. 326, No. 6111. (1 1987), pp. 347-352. by T. L. Blundell, B. L. Sibanda, M. J. Sternberg, J. M. Thornton posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling. [My Copy] Protein Eng, Vol. 1, No. 3. (June 1987), pp. 159-171. by T. J. Hubbard, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. [My Copy] Protein Eng, Vol. 1, No. 5. (v 1987), pp. 377-384. by M. J. Sutcliffe, I. Haneef, D. Carney, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:32 as
	Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains. [My Copy] Protein Eng, Vol. 1, No. 5. (v 1987), pp. 385-392. by M. J. Sutcliffe, F. R. Hayes, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering. [My Copy] J Mol Biol, Vol. 206, No. 4. (20 April 1989), pp. 759-777. by B. L. Sibanda, T. L. Blundell, J. M. Thornton posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Molecular anatomy: phyletic relationships derived from three-dimensional structures of proteins. [My Copy] J Mol Evol, Vol. 30, No. 1. (January 1990), pp. 43-59. by M. S. Johnson, M. J. Sutcliffe, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction. [My Copy] Proc Biol Sci, Vol. 241, No. 1301. (22 August 1990), pp. 132-145. by J. Overington, M. S. Johnson, A. Sali, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	A variable gap penalty function and feature weights for protein 3-D structure comparisons. [My Copy] Protein Eng, Vol. 5, No. 1. (January 1992), pp. 43-51. by Z. Y. Zhu, A. Sali, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds. [My Copy] Protein Sci, Vol. 1, No. 2. (February 1992), pp. 216-226. by J. Overington, D. Donnelly, M. S. Johnson, A. Sali, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Domain flexibility in aspartic proteinases [My Copy] Proteins: Structure, Function, and Genetics, Vol. 12, No. 2. (1992), pp. 158-170. by Andrej ?ali, B. Veerapandian, Jon Cooper, David Moss, Theo Hofmann, Tom Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Modeling alpha-helical transmembrane domains: the calculation and use of substitution tables for lipid-facing residues. [My Copy] Protein Sci, Vol. 2, No. 1. (January 1993), pp. 55-70. by D. Donnelly, J. P. Overington, S. V. Ruffle, J. H. Nugent, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:31 as
	Fragment Ranking in Modelling of Protein Structure : Conformationally Constrained Environmental Amino Acid Substitution Tables [My Copy] Journal of Molecular Biology, Vol. 229, No. 1. (5 January 1993), pp. 194-220. by Christopher Topham, Alasdair Mcleod, Frank Eisenmenger, John Overington, Mark Johnson, Tom Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:30 as
	Modelling of the lignin peroxidase LIII of Phlebia radiata: use of a sequence template generated from a 3-D structure. [My Copy] Protein Eng, Vol. 6, No. 2. (February 1993), pp. 177-182. by A. M. Hoffrén, M. Saloheimo, P. Thomas, et al.J. P. Overington, M. S. Johnson, J. K. Knowles, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:30 as
	Exploration of subsite binding specificity of human cathepsin D through kinetics and rule-based molecular modeling. [My Copy] Protein Sci, Vol. 2, No. 2. (February 1993), pp. 264-276. by P. E. Scarborough, K. Guruprasad, C. Topham, et al.G. R. Richo, G. E. Conner, T. L. Blundell, B. M. Dunn posted to file-import-09-06-23 by semin on 2009-06-23 20:52:30 as
	Catching a common fold. [My Copy] Protein Sci, Vol. 2, No. 6. (June 1993), pp. 877-883. by T. L. Blundell, M. S. Johnson posted to file-import-09-06-23 by semin on 2009-06-23 20:52:30 as
	Alignment and searching for common protein folds using a data bank of structural templates. [My Copy] J Mol Biol, Vol. 231, No. 3. (5 June 1993), pp. 735-752. by M. S. Johnson, J. P. Overington, T. L. Blundell posted to file-import-09-06-23 by semin on 2009-06-23 20:52:30 as

Note: You may cite this page as: http://www.citeulike.org/user/semin

Result page: 1 2 3 4 5 6 Next

file-import-09-06-23	268
database	10
alignment	5
protein-na_interaction	3
protein-rna_interaction	3
tlb_mb_review_2009	3
protein-dna_interaction	2
baton	1
classification	1
comparative_modelling	1
evolution	1
fgf	1
interaction	1
interactomics	1
protein	1
protein-protein	1
protein-protein_interaction	1
snp	1
tlb	1

semin's library 269 articles Export

semin's tags