shantanu's library 28 articles Export

	Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions. [My Copy] Int J Pept Protein Res, Vol. 7, No. 6. (1975), pp. 445-459. by H. Taketomi, Y. Ueda, N. Gō posted to no-tag by shantanu on 2007-11-21 03:48:24 as along with 1 person dgront
	Having a BLAST with bioinformatics (and avoiding BLASTphemy). [My Copy] Genome Biol, Vol. 2, No. 10. (2001) by A. Pertsemlidis, J. W. Fondon posted to bioinformatics genomics by shantanu on 2007-10-18 17:41:59 as along with 10 people and 2 groups sandfire orzenil karbak ziquje prtmht textoris cjeans sujaikumar scottstensland hpaces Bioinformatics MathBio
	Knowledge-based prediction of DNA atomic structure from nucleic sequence. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 16, No. 2. (2005), pp. 12-21. by Marcos J. Araúzo-Bravo, Akinori Sarai posted to bioinformatics dna dna_structure by shantanu on 2007-10-18 17:40:36 as along with 1 person and 2 groups echcram structural_bioinformatics Bioinformatics
	Linear algebra operators for GPU implementation of numerical algorithms [My Copy] In SIGGRAPH '05: ACM SIGGRAPH 2005 Courses (2005) by Jens Krüger, Rüdiger Westermann posted to algorithms computer_science gpu mathematics by shantanu on 2007-10-18 17:39:32 as
	Bending and curvature calculations in B-DNA. [My Copy] Nucleic Acids Res, Vol. 22, No. 24. (11 December 1994), pp. 5497-5503. by D. S. Goodsell, R. E. Dickerson posted to dna dna_structure by shantanu on 2007-10-18 17:38:43 as along with 2 people inesdesantiago nucleosome
	Single-nucleosome mapping of histone modifications in S. cerevisiae. [My Copy] PLoS Biol, Vol. 3, No. 10. (October 2005) by C. L. Liu, T. Kaplan, M. Kim, et al.S. Buratowski, S. L. Schreiber, N. Friedman, O. J. Rando posted to chromatin histone histone_modifications nucleosome yeast by shantanu on 2007-10-18 17:37:50 as along with 3 people and 1 group zhlei nucleosome olympos Chromatin
	New and Notable: DNA Sequence Mediates Nucleosome Structure and Stability. [My Copy] Biophys J (12 October 2007) by Shantanu Sharma, Nikolay V V. Dokholyan posted to chromatin dna histone nucleosome publications by shantanu on 2007-10-18 17:32:48 as along with 1 person and 1 group aalibes Chromatin
	Gene splice sites correlate with nucleosome positions. [My Copy] Gene, Vol. 352 (6 June 2005), pp. 57-62. by S. Kogan, E. N. Trifonov posted to chromatin histone nucleosome nucleosome_positioning by shantanu on 2007-09-30 18:15:50 as along with 2 people and 1 group Cortel nucleosome Chromatin
	Global nucleosome occupancy in yeast [My Copy] Genome Biology, Vol. 5, No. 9. (2004), R62. by Bradley Bernstein, Chih Liu, Emily Humphrey, Ethan Perlstein, Stuart Schreiber posted to chromatin histone nucleosome nucleosome_positioning by shantanu on 2007-09-30 18:15:07 as along with 4 people and 2 groups humburg hagechouchin443 nucleosome kengg Plantandetc Chromatin
	Molecular Dynamic Simulations of Cisplatin- and Oxaliplatin-d(GG) Intrastand Cross-links Reveal Differences in their Conformational Dynamics. [My Copy] J Mol Biol (23 August 2007) by Shantanu Sharma, Peng Gong, Brenda Temple, Debadeep Bhattacharyya, Nikolay V V. Dokholyan, Stephen G G. Chaney posted to anticancer cancer cisplatin dna_structure drug oxaliplatin publications by shantanu on 2007-09-30 18:06:41 as along with 4 groups structural_bioinformatics MathBio Bioinformatics Computational-Neurobiology
	Time Scheduling of Transit Systems With Transfer Considerations Using Genetic Algorithms [My Copy] Evolutionary Computation, Vol. 6, No. 1. (1998), pp. 1-24. by Kalyanmoy Deb, Partha Chakroborty posted to algorithms computer_science genetic_algorithms by shantanu on 2007-08-29 20:52:53 as along with 1 person and 10 groups aitter structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Numerics Optimization
	Epigenetic Consequences of Nucleosome Dynamics [My Copy] Cell, Vol. 111, No. 3. (1 November 2002), pp. 281-284. by Kami Ahmad, Steven Henikoff posted to epigenetics nucleosome by shantanu on 2007-08-20 03:33:16 as along with 1 person and 8 groups balicea structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Nucleosome remodelers on track [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 9., pp. 732-733. by Peter B. Becker posted to nucleosome remodeling by shantanu on 2007-08-20 03:31:38 as along with 8 groups structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Protein folding: Then and now. [My Copy] Arch Biochem Biophys (8 June 2007) by Yiwen Chen, Feng Ding, Huifen Nie, et al.Adrian W W. Serohijos, Shantanu Sharma, Kyle C C. Wilcox, Shuangye Yin, Nikolay V V. Dokholyan posted to protein_folding publications by shantanu on 2007-07-02 01:12:30 as along with 1 person and 8 groups choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	The path of DNA in the kinetochore. [My Copy] Curr Biol, Vol. 16, No. 8. (18 April 2006) by K. Bloom, S. Sharma, N. V. Dokholyan posted to centromere chromatin dna histone nucleosome publications by shantanu on 2007-05-05 17:46:09 as along with 8 groups structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	iFold: a platform for interactive folding simulations of proteins. [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694. by S. Sharma, F. Ding, H. Nie, et al.D. Watson, A. Unnithan, J. Lopp, D. Pozefsky, N. V. Dokholyan posted to protein_folding publications simulation by shantanu on 2007-04-26 00:50:16 as along with 1 person and 8 groups plofje structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Multiscale Modeling of Nucleosome Dynamics [My Copy] Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1457-1470. by Shantanu Sharma, Feng Ding, Nikolay V. Dokholyan posted to chromatin dna histone nucleosome publications simulation by shantanu on 2007-04-26 00:49:03 as along with 5 people and 9 groups afenley aalibes choonpeng skoch3 phisics structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Koch_Lab
	A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4280-4288. by Yang Xie, Wei Pan, Arkady B. Khodursky posted to microarray by shantanu on 2006-06-28 04:43:23 as along with 6 people and 8 groups rdiaz paszkows klaudius dquest shigepong shikin structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Recent advances in Cys-loop receptor structure and function [My Copy] Nature, Vol. 440, No. 7083. (23 March 2006), pp. 448-455. by Steven M. Sine, Andrew G. Engel posted to protein_structure by shantanu on 2006-04-05 19:20:33 as along with 1 person and 8 groups barry structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2860-2874. by N. M. Luscombe, R. A. Laskowski, J. M. Thornton posted to protein_dna protein_structure by shantanu on 2006-02-07 18:32:29 as along with 3 people and 8 groups kaarsinogen semin medic0747 structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Binding MOAD (Mother Of All Databases). [My Copy] Proteins (21 June 2005) by Liegi Hu, Mark L L. Benson, Richard D D. Smith, Michael G G. Lerner, Heather A A. Carlson posted to databases by shantanu on 2006-02-03 00:38:53 as along with 5 people and 10 groups BragilMassoud sangeetha caporaso papatonyhill higueruelo structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology biomedical-nlp insilicodrug
	How hormone receptor-DNA binding affects nucleosomal DNA: the role of symmetry. [My Copy] Biophys J, Vol. 72, No. 5. (May 1997), pp. 2056-2067. by T. C. Bishop, D. Kosztin, K. Schulten posted to dna_structure nucleosome by shantanu on 2006-01-31 23:26:03 as along with 8 groups structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Histone acetylation in chromatin structure and transcription [My Copy] Nature, Vol. 389, No. 6649. (1997), pp. 349-352. by Michael Grunstein posted to histone transcription by shantanu on 2006-01-31 21:44:13 as along with 1 person and 8 groups olympos structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Automatic 3D Protein Structure Classification without Structural Alignment [My Copy] Journal of Computational Biology, Vol. 12, No. 9. (2005), pp. 1221-1241. by Zeyar Aung, Kian-Lee Tan posted to protein_structure by shantanu on 2006-01-28 07:29:58 as along with 2 people and 8 groups ana barry structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Helix to helix packing in proteins. [My Copy] J Mol Biol, Vol. 145, No. 1. (5 January 1981), pp. 215-250. by C. Chothia, M. Levitt, D. Richardson posted to protein_structure by shantanu on 2006-01-28 07:28:09 as along with 1 person and 8 groups ana structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Small-world view of the amino acids that play a key role in protein folding. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002) by M. Vendruscolo, N. V. Dokholyan, E. Paci, M. Karplus posted to protein_folding by shantanu on 2006-01-25 05:03:12 as along with 3 people and 8 groups ana barry choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to yeast by shantanu on 2006-01-25 04:59:31 as along with 31 people and 10 groups aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Structure alignment via Delaunay tetrahedralization. [My Copy] Proteins (26 April 2005) by Jeffrey Roach, Shantanu Sharma, Maryna Kapustina, Charles W W. Carter posted to publications structure_alignment by shantanu on 2006-01-25 04:52:11 as along with 3 people and 9 groups BragilMassoud ana barry MuraLab structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology

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nucleosome	9
histone	7
publications	7
chromatin	6
dna	5
dna_structure	4
protein_structure	4
protein_folding	3
algorithms	2
bioinformatics	2
computer_science	2
nucleosome_positioning	2
simulation	2
yeast	2
anticancer	1
cancer	1
centromere	1
cisplatin	1
databases	1
drug	1
epigenetics	1
genetic_algorithms	1
genomics	1
gpu	1
histone_modifications	1
mathematics	1
microarray	1
oxaliplatin	1
protein_dna	1
remodeling	1
structure_alignment	1
transcription	1

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