shikin's library 516 articles Export

	Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R128. by Tatiana Popova, Elodie Manie, Dominique S. Lyonnet, Guillem Rigaill, Emmanuel Barillot, Marc H. Stern posted to snp microarray cnv by shikin on 2009-11-19 18:00:46 as
	Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. [My Copy] Algorithms for molecular biology : AMB, Vol. 4, No. 1. (22 April 2009), 7. by Koji Kadota, Yuji Nakai, Kentaro Shimizu posted to microarray differential_expression comparison by shikin on 2009-11-19 14:53:48 as along with 6 people ericrpaquet bertelsen daforerog dswan renatomilani lptolik
	Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. [My Copy] FEBS letters, Vol. 573, No. 1-3. (27 August 2004), pp. 83-92. by Rainer Breitling, Patrick Armengaud, Anna Amtmann, Pawel Herzyk posted to integration by shikin on 2009-11-19 14:02:52 as along with 10 people zchen daforerog ipark-kaist bertelsen dswan akastrin kengg schuylrp bakakaj 0004573p
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to statistics differential_expression bayesian by shikin on 2009-11-18 18:27:56 as along with 19 people and 1 group schwalb bertelsen jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Stew ihpark giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor posted to microarray integration by shikin on 2009-11-18 11:02:55 as along with 4 people and 2 groups sillitoe dswan heliopais neils Orengo Group Journal Picks Bioinformatics
	Statistical methods of background correction for Illumina BeadArray data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 751-757. by Yang Xie, Xinlei Wang, Michael Story posted to statistics microarray illumina bg_correction bayesian by shikin on 2009-11-17 15:45:44 as along with 8 people and 1 group jfr ptrobajo welliegirl rdiaz Stew heliopais dswan guhjy Bioinformatics - CRUK
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to snp cnv affy by shikin on 2009-11-13 17:42:47 as along with 20 people and 1 group vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted to snp method cnv affy by shikin on 2009-11-12 18:02:50 as along with 14 people sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Illumina WG-6 BeadChip strips should be normalized separately [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 372. by Wei Shi, Ashish Banerjee, Matthew Ritchie, Steve Gerondakis, Gordon Smyth posted to normalization illumina by shikin on 2009-11-11 14:19:29 as along with 2 people heliopais ptrobajo
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted to network ideker by shikin on 2009-11-06 17:48:35 as along with 27 people carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	Functional analysis of OMICs data and small molecule compounds in an integrated "knowledge-based" platform. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 563 (2009), pp. 177-196. by Yuri Nikolsky, Eugene Kirillov, Roman Zuev, Eugene Rakhmatulin, Tatiana Nikolskaya posted to genego by shikin on 2009-11-06 17:31:55 as along with 1 group GeneGo
	Network analysis of human glaucomatous optic nerve head astrocytes. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 24. by Tatiana Nikolskaya, Yuri Nikolsky, Tatiana Serebryiskaya, et al.Svetlana Zvereva, Eugene Sviridov, Zoltan Dezso, Eugene Rahkmatulin, Richard J. Brennan, Nick Yankovsky, Sanjoy K. Bhattacharya, Olga Agapova, M. Rosario Hernandez, Valery I. Shestopalov posted to pathway-analysis genego by shikin on 2009-11-06 17:29:51 as along with 1 person and 1 group tonamswish GeneGo
	PAGE: parametric analysis of gene set enrichment. [My Copy] BMC bioinformatics, Vol. 6 (2005) by Seon-Young Y. Kim, David J. Volsky posted to pathway-analysis gsea by shikin on 2009-11-06 14:13:23 as along with 9 people and 1 group tonamswish mtagaya pradeep2005s ealloza jdiggans waghsk srp33 heliopais giovenko BioinfoCIPF
	Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711. by Rebeqa Gunnarsson, Johan Staaf, Mattias Jansson, et al.Anne Marie M. Ottesen, Hanna Göransson, Ulrika Liljedahl, Ulrik Ralfkiaer, Mahmoud Mansouri, Anne Mette M. Buhl, Karin Ekström E. Smedby, Henrik Hjalgrim, Ann-Christine C. Syvänen, Ake Borg, Anders Isaksson, Jesper Jurlander, Gunnar Juliusson, Richard Rosenquist posted to snp illumina cnv affy by shikin on 2009-10-29 18:51:56 as along with 1 person jfr
	Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (02 October 2008), 409. by Johan Staaf, Johan Vallon-Christersson, David Lindgren, et al.Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Ake Borg, Markus Ringnér posted to snp normalization illumina by shikin on 2009-10-28 17:58:16 as along with 1 person vplagnol
	High-throughput SNP genotyping on universal bead arrays. [My Copy] Mutation research, Vol. 573, No. 1-2. (3 June 2005), pp. 70-82. by Richard Shen, Jian-Bing B. Fan, Derek Campbell, et al.Weihua Chang, Jing Chen, Dennis Doucet, Jo Yeakley, Marina Bibikova, Eliza Wickham Garcia, Celeste McBride, Frank Steemers, Francisco Garcia, Bahram G. Kermani, Kevin Gunderson, Arnold Oliphant posted to snp microarray illumina by shikin on 2009-10-28 16:31:07 as along with 1 person stsaft
	High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays. [My Copy] Genome research, Vol. 17, No. 3. (31 March 2007), pp. 368-376. by Jan Oosting, Esther H. Lips, Ronald van Eijk, et al.Paul H. Eilers, Károly Szuhai, Cisca Wijmenga, Hans Morreau, Tom van Wezel posted to snp illumina by shikin on 2009-10-28 14:30:41 as along with 2 people jfr shigepong
	Statistical issues in the analysis of DNA Copy Number Variations. [My Copy] International journal of computational biology and drug design, Vol. 1, No. 4. (1 January 2008), pp. 368-395. by Nathan E. Wineinger, Richard E. Kennedy, Stephen W. Erickson, Mary K. Wojczynski, Carl E. Bruder, Hemant K. Tiwari posted to statistics cnv by shikin on 2009-10-28 14:14:31 as
	The UCSC genome browser: what every molecular biologist should know. [My Copy] Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.], Vol. Chapter 19 (October 2009) by Mary E. Mangan, Jennifer M. Williams, Robert M. Kuhn, Warren C. Lathe posted to genomics genome_browser by shikin on 2009-10-27 19:09:28 as along with 1 person psique
	Comparison of comparative genomic hybridization technologies across microarray platforms. [My Copy] Journal of biomolecular techniques : JBT, Vol. 20, No. 2. (April 2009), pp. 135-151. by Susan D. Hester, Laura Reid, Norma Nowak, et al.Wendell D. Jones, Joel S. Parker, Kevin Knudtson, William Ward, Jay Tiesman, Nancy D. Denslow posted to cnv by shikin on 2009-10-27 17:49:24 as along with 2 people rdiaz idonaldson
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to snp r cnv affy by shikin on 2009-10-27 17:36:28 as along with 5 people djkt pkonings rdiaz daforerog neils
	High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping. [My Copy] Genome research, Vol. 16, No. 9. (September 2006), pp. 1136-1148. by Daniel A. Peiffer, Jennie M. Le, Frank J. Steemers, et al.Weihua Chang, Tony Jenniges, Francisco Garcia, Kirt Haden, Jiangzhen Li, Chad A. Shaw, John Belmont, Sau Wai W. Cheung, Richard M. Shen, David L. Barker, Kevin L. Gunderson posted to snp microarray illumina cnv by shikin on 2009-10-27 17:24:03 as along with 3 people baizhang jfr jackjackjjj
	Systematic assessment of copy number variant detection via genome-wide SNP genotyping. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1199-1203. by Gregory M. Cooper, Troy Zerr, Jeffrey M. Kidd, Evan E. Eichler, Deborah A. Nickerson posted to snp microarray cnv by shikin on 2009-10-27 17:23:18 as along with 12 people and 1 group sameersoi daforerog psique maren pengchy vplagnol waszak caseybrown Zephyrus misonneh rdiaz guhjy Roswell Cancer Crosstalk
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to snp microarray cnv by shikin on 2009-10-27 16:51:13 as along with 10 people and 4 groups rdiaz waszak jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	The SNP ratio test: pathway analysis of genome-wide association datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2762-2763. by Colm O'Dushlaine, Elaine Kenny, Elizabeth A. Heron, et al.Ricardo Segurado, Michael Gill, Derek W. Morris, Aiden Corvin posted to snp pathway-analysis by shikin on 2009-10-26 18:15:20 as along with 8 people zufar liqbbi daforerog rdiaz natstreet pkonings guhjy druvus
	Moderated effect size and P-value combinations for microarray meta-analyses [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2692-2699. by Guillemette Marot, Jean-Louis Foulley, Claus-Dieter Mayer, Florence Jaffrezic posted to r meta-analysis integration gene_expression by shikin on 2009-10-26 18:01:13 as along with 6 people zufar dswan renatomilani rdiaz nuin daforerog
	Meta-analysis of genome searches. [My Copy] Annals of human genetics, Vol. 63, No. Pt 3. (May 1999), pp. 263-272. by L. H. Wise, J. S. Lanchbury, C. M. Lewis posted to meta-analysis integration gwas by shikin on 2009-10-26 17:41:52 as along with 1 person and 3 groups beapen Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
	A tutorial on statistical methods for population association studies. [My Copy] Nature reviews. Genetics, Vol. 7, No. 10. (October 2006), pp. 781-791. by David J. Balding posted to statistics gwas by shikin on 2009-10-26 16:54:00 as along with 19 people and 2 groups buyske ilyashl Dulcinea debasis ekostem natstreet druvus Zephyrus daforerog misonneh psique jbsaltz guhjy jermth giovanni joepickrell dbgrant jo_davies kieran101 Roswell Cancer Crosstalk GeschwindLab
	Genome-wide association studies for common diseases and complex traits. [My Copy] Nature reviews. Genetics, Vol. 6, No. 2. (01 February 2005), pp. 95-108. by Joel N. Hirschhorn, Mark J. Daly posted to gwas by shikin on 2009-10-26 16:52:11 as along with 11 people and 1 group fisherp ekostem Zephyrus cheyloveday misonneh pengchy caldavis oilcan indigoviolet massivemayhem dbgrant EisenLab
	Bayesian statistical methods for genetic association studies. [My Copy] Nature reviews. Genetics, Vol. 10, No. 10. (01 October 2009), pp. 681-690. by Matthew Stephens, David J. Balding posted to gwas bayesian by shikin on 2009-10-26 16:48:54 as along with 24 people and 1 group welliegirl Geknitics heliopais Zephyrus nuin matjes pkonings fastjoe23 guhjy maren gregdavisfromnj natstreet TRHvidsten zufar n00c lwaldron megraw rdiaz kimorley leliavski misonneh qayub daforerog druvus Journal picks
	A genotype calling algorithm for affymetrix SNP arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 1. (1 January 2006), pp. 7-12. by Nusrat Rabbee, Terence P. Speed posted to statistics snp affy by shikin on 2009-10-26 16:13:35 as along with 6 people daforerog pcahan1 jfr beniltoncarvalho ashandanj djkt
	SNPchip: R classes and methods for SNP array data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 5. (1 March 2007), pp. 627-628. by Robert B. Scharpf, Jason C. Ting, Jonathan Pevsner, Ingo Ruczinski posted to snp r by shikin on 2009-10-26 16:11:41 as along with 6 people daforerog guhjy jfr Ayest eckart_bindewald cpnP
	Linkage and association: basic concepts. [My Copy] Advances in genetics, Vol. 60 (2008), pp. 51-74. by Ingrid B. Borecki, Michael A. Province posted to gwas by shikin on 2009-10-26 16:05:13 as
	Association methods in human genetics. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 404 (2007), pp. 431-460. by Carl D. Langefeld, Tasha E. Fingerlin posted to method gwas by shikin on 2009-10-26 16:01:05 as
	PLINK: a tool set for whole-genome association and population-based linkage analyses. [My Copy] American journal of human genetics, Vol. 81, No. 3. (September 2007), pp. 559-575. by Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, et al.Lori Thomas, Manuel A. Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I. de Bakker, Mark J. Daly, Pak C. Sham posted to software gwas by shikin on 2009-10-26 15:59:08 as along with 10 people and 3 groups natstreet xingxu maren daforerog ekostem vplagnol misonneh Zephyrus stajich psique Roswell Cancer Crosstalk Mycology parkinson's disease references
	Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. [My Copy] Genome biology, Vol. 9, No. 4. (3 April 2008), R63. by Shin Lin, Benilton Carvalho, David J. Cutler, Dan E. Arking, Aravinda Chakravarti, Rafael A. Irizarry posted to snp bayesian by shikin on 2009-10-26 11:54:02 as along with 5 people rdiaz daforerog maren natstreet jfr
	Pathway and network-based analysis of genome-wide association studies in multiple sclerosis [My Copy] Hum. Mol. Genet., Vol. 18, No. 11. (1 June 2009), pp. 2078-2090. by Sergio E. Baranzini, Nicholas W. Galwey, Joanne Wang, et al.Pouya Khankhanian, Raija Lindberg, Daniel Pelletier, Wen Wu, Bernard M. J. Uitdehaag, Ludwig Kappos, GeneMSA Consortium, Chris H. Polman, Paul M. Matthews, Stephen L. Hauser, Rachel A. Gibson, Jorge R. Oksenberg, Michael R. Barnes posted to pathway-analysis gwas by shikin on 2009-10-26 10:48:20 as along with 4 people nsc129psu zufar daforerog jdbowes
	Computational methods for identification of recurrent copy number alteration patterns by array CGH. [My Copy] Cytogenetic and genome research, Vol. 123, No. 1-4. (2008), pp. 343-351. by S. P. Shah posted to cnv by shikin on 2009-10-08 15:24:35 as along with 1 person rdiaz
	Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 September 2009), 307. by Petri Toronen, Pauli Ojala, Pekka Marttinen, Liisa Holm posted to gene_set enrichment by shikin on 2009-10-08 15:05:08 as along with 2 people antonkratz barriot
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to gsea gene_set enrichment by shikin on 2009-10-08 13:51:55 as along with 17 people and 1 group ptrobajo zufar srp33 vingron dipenps arjun_citeulike guhjy pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2348-2354. by Galina V. Glazko, Frank Emmert-Streib posted to gene_set gene_expression enrichment by shikin on 2009-10-08 13:25:36 as along with 8 people zufar rdiaz brianb m509396 dswan natstreet guhjy neils
	metahdep: meta-analysis of hierarchically dependent gene expression studies [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2619-2620. by John R. Stevens, Gabriel Nicholas posted to r microarray meta-analysis integration by shikin on 2009-10-02 19:32:16 as along with 3 people dswan daforerog guhjy
	A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy. [My Copy] BMC genomics, Vol. 9 (26 February 2008), 98. by Xiangrong Kong, Valeria Mas, Kellie J. Archer posted to microarray integration by shikin on 2009-10-02 19:31:14 as along with 3 people guhjy jfr kengg
	Novel and simple transformation algorithm for combining microarray data sets. [My Copy] BMC bioinformatics, Vol. 8 (25 June 2007), 218. by Ki-Yeol Y. Kim, Dong Hyuk H. Ki, Ha Jin J. Jeong, Hei-Cheul C. Jeung, Hyun Cheol C. Chung, Sun Young Y. Rha posted to microarray integration by shikin on 2009-10-02 19:30:25 as along with 6 people pengchy guhjy jfr shigepong fmenolascina GeeSharpMinor
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to statistics method gene_expression by shikin on 2009-10-02 13:53:02 as along with 12 people and 1 group jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	Model-based variance-stabilizing transformation for Illumina microarray data. [My Copy] Nucleic acids research, Vol. 36, No. 2. (4 February 2008), gkm1075. by Simon M. Lin, Pan Du, Wolfgang Huber, Warren A. Kibbe posted to normalization illumina by shikin on 2009-10-02 11:15:26 as along with 5 people ptrobajo heliopais jfr neveaire guhjy
	lumi: a pipeline for processing Illumina microarray. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1547-1548. by Pan Du, Warren A. Kibbe, Simon M. Lin posted to r qc normalization illumina by shikin on 2009-10-02 09:48:59 as along with 6 people daforerog ptrobajo heliopais jfr guhjy Stew
	Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression. [My Copy] Journal of biomolecular techniques : JBT, Vol. 19, No. 2. (April 2008), pp. 122-128. by Meijuan Li, Cavan Reilly posted to qc microarray affy by shikin on 2009-09-28 15:51:15 as along with 1 person jfr
	MDQC: a new quality assessment method for microarrays based on quality control reports. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 23. (1 December 2007), pp. 3162-3169. by Gabriela V. Cohen Freue, Zsuzsanna Hollander, Enqing Shen, et al.Ruben H. Zamar, Robert Balshaw, Andreas Scherer, Bruce McManus, Paul Keown, W. Robert McMaster, Raymond T. Ng posted to qc microarray by shikin on 2009-09-28 15:49:11 as along with 4 people zufar guhjy aviad_work waszak
	arrayMagic: two-colour cDNA microarray quality control and preprocessing. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 4. (15 February 2005), pp. 554-556. by Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka posted to r qc microarray by shikin on 2009-09-28 15:34:01 as

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gene_expression	92
systems_biology	92
microarray	79
genomics	78
statistics	73
cancer	52
meta-analysis	52
thesis	45
network	36
pathway-analysis	33
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
affy	18
snp	18
enrichment	17
breast	16
toxicology	16
normalization	15
gwas	13
diabetes	12
gene_association	12
illumina	12
integration	12
nephrotoxicity	11
rage	10
bayesian	9
gsea	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
coexpression	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1

shikin's library 516 articles Export

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