shikin's library 525 articles Export

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	Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 48. by Ivan P. Gorlov, Jinyoung Byun, Olga Y. Gorlova, Ana M. Aparicio, Eleni Efstathiou, Christopher J. Logothetis posted to prostate meta-analysis integration cancer by shikin on 2009-09-14 13:27:46 as along with 2 people lwaldron daforerog
	A comprehensive functional analysis of tissue specificity of human gene expression. [My Copy] BMC biology, Vol. 6, No. 1. (2008) by Z. Dezso, Y. Nikolsky, E. Sviridov, et al.W. Shi, T. Serebriyskaya, D. Dosymbekov, A. Bugrim, E. Rakhmatulin, R. J. Brennan, A. Guryanov, K. Li, J. Blake, R. R. Samaha, T. Nikolskaya posted to gene_expression genego pathway-analysis by shikin on 2009-07-06 12:35:42 as along with 8 people and 1 group dolchan grahamc jfr guhjy acanario inesdesantiago imina GeeSharpMinor GeneGo
	Elucidation of differential response networks from toxicogenomics data [My Copy] (23 May 2008) by Z. Dezso, R. Welch, V. Kazandaev, et al.A. Naito, J. Fuscoe, C. Melvin, Y. Dragan, Y. Nikolsky, T. Nikolskaya, A. Bugrim posted to genego pathway-analysis by shikin on 2009-06-16 11:15:10 as along with 1 group GeneGo
	Exploring the human genome with functional maps. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1093-1106. by Curtis Huttenhower, Erin M. Haley, Matthew A. Hibbs, et al.Vanessa Dumeaux, Daniel R. Barrett, Hilary A. Coller, Olga G. Troyanskaya posted to meta-analysis microarray pathway-analysis by shikin on 2009-06-02 19:25:14 as along with 9 people jfr ptrobajo daforerog fenghezi idoerg guhjy pinney grahamc pkonings
	A new summarization method for affymetrix probe level data [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949. by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer posted to affy method normalization statistics by shikin on 2009-05-06 19:29:29 as along with 3 people bertelsen cassj ghattem
	Merging Two Gene Expression Studies via Cross Platform Normalization. [My Copy] Bioinformatics (5 March 2008) by Andrey A A. Shabalin, Håkon Tjelmeland, Cheng Fan, Charles M M. Perou, Andrew B B. Nobel posted to gene_expression meta-analysis microarray by shikin on 2009-01-16 12:51:44 as along with 1 person shigepong
	Regulation of in situ to invasive breast carcinoma transition. [My Copy] Cancer cell, Vol. 13, No. 5. (May 2008), pp. 394-406. by M. Hu, J. Yao, D. K. Carroll, et al.S. Weremowicz, H. Chen, D. Carrasco, A. Richardson, S. Violette, T. Nikolskaya, Y. Nikolsky, E. L. Bauerlein, W. C. Hahn, R. S. Gelman, C. Allred, M. J. Bissell, S. Schnitt, K. Polyak posted to breast cancer genego by shikin on 2008-12-12 16:32:26 as along with 1 group GeneGo
	Cell type-specific DNA methylation patterns in the human breast. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (9 September 2008) by Noga Bloushtain-Qimron, Jun Yao, Eric L L. Snyder, et al.Michail Shipitsin, Lauren L L. Campbell, Sendurai A A. Mani, Min Hu, Haiyan Chen, Vadim Ustyansky, Jessica E E. Antosiewicz, Pedram Argani, Marc K K. Halushka, James A A. Thomson, Paul Pharoah, Angel Porgador, Saraswati Sukumar, Ramon Parsons, Andrea L L. Richardson, Martha R R. Stampfer, Rebecca S S. Gelman, Tatiana Nikolskaya, Yuri Nikolsky, Kornelia Polyak posted to cancer genego genomics methylation by shikin on 2008-09-22 12:36:23 as along with 1 person and 1 group misonneh GeneGo
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to cancer genego genomics systems_biology by shikin on 2008-09-08 14:08:41 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shigepong Roswell Cancer Crosstalk GeneGo
	Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses [My Copy] Science (4 September 2008), 1164368. by Sian Jones, Xiaosong Zhang, D. Williams Parsons, et al.Jimmy C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E. Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer genego genomics pancreas systems_biology by shikin on 2008-09-08 13:52:48 as along with 18 people and 3 groups zufar jbhiatt dolchan wimufi jo_davies srp33 jfr whh98 roys cmzmasek thomaskelder fongkoh AlexanderPico SaraNasser renatomilani brianb songpku giovenko ConklinLab GeneGo Roswell Cancer Crosstalk
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer genego genomics systems_biology by shikin on 2008-09-08 13:52:08 as along with 15 people and 2 groups VGreiff stubrown Zephyrus zufar dolchan frohike caseybrown wimufi jfr srp33 renatomilani brianb aheilbut songpku giovenko GeneGo Roswell Cancer Crosstalk
	Computational systems biology. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210. by Hiroaki Kitano posted to systems_biology by shikin on 2008-05-19 17:14:50 as along with 25 people and 6 groups schwartzjmc jporternj tom4m3 schmidtm jaimie nedwards dansullivanblk ggallone daforerog reyez frohike irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc maburkitt Jarman Lab dbk-lab TCR_Signaling SysbioMPI-TCells livingthing GeneGo
	Technological platforms for microarray gene expression profiling. [My Copy] Advances in experimental medicine and biology, Vol. 593 (2007), pp. 12-18. by S. Mandruzzato posted to microarray by shikin on 2008-05-04 15:13:54 as
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to hood systems_biology by shikin on 2008-05-04 13:29:16 as along with 14 people and 3 groups pmendes myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar thomaskelder Bioinformatics steinmetzlab GeneGo
	Genetics of gene expression and its effect on disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 423-428. by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, et al.Amy S. Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, G. Bragi Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H. Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P. Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G. Gislason, Tryggvi Stefansson, Bjorn G. Leifsson, Unnur Thorsteinsdottir, John R. Lamb, Jeffrey R. Gulcher, Marc L. Reitman, Augustine Kong, Eric E. Schadt, Kari Stefansson posted to gene_expression genego genomics systems_biology by shikin on 2008-03-19 11:29:37 as along with 20 people and 2 groups nicholso Zephyrus greg daforerog athma zufar druvus brianb djkt lp2 jo_davies caseybrown ptrobajo vplagnol smbe2008 echinotrix natstreet sanchezbuelna guhjy Borelli 4th_floor_JC GeneGo
	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W340-344. by Ignacio Medina, David Montaner, Nuria Bonifaci, et al.Miguel Angel A. Pujana, José Carbonell, Joaquin Tarraga, Fatima Al-Shahrour, Joaquin Dopazo posted to snp pathway-analysis gwas gsea by shikin on 2009-11-24 20:49:01 as along with 6 people zufar daed ptrobajo daforerog kimorley guhjy
	Pathway analysis of seven common diseases assessed by genome-wide association. [My Copy] Genomics, Vol. 92, No. 5. (16 November 2008), pp. 265-272. by Ali Torkamani, Eric J. Topol, Nicholas J. Schork posted to pathway-analysis gwas gene_association by shikin on 2009-11-24 20:48:09 as along with 6 people daed gderwin daforerog zufar guhjy jdbowes
	Genetic control of human brain transcript expression in Alzheimer disease. [My Copy] American journal of human genetics, Vol. 84, No. 4. (April 2009), pp. 445-458. by Jennifer A. Webster, J. Raphael Gibbs, Jennifer Clarke, et al.Monika Ray, Weixiong Zhang, Peter Holmans, Kristen Rohrer, Alice Zhao, Lauren Marlowe, Mona Kaleem, Donald S. McCorquodale, Cindy Cuello, Doris Leung, Leslie Bryden, Priti Nath, Victoria L. Zismann, Keta Joshipura, Matthew J. Huentelman, Diane Hu-Lince, Keith D. Coon, David W. Craig, John V. Pearson, NACC-Neuropathology Group, Christopher B. Heward, Eric M. Reiman, Dietrich Stephan, John Hardy, Amanda J. Myers posted to snp gene_expression gene_association by shikin on 2009-11-24 20:44:52 as along with 2 people jeremymiller daforerog
	Using genome-wide pathway analysis to unravel the etiology of complex diseases. [My Copy] Genetic epidemiology, Vol. 33, No. 5. (July 2009), pp. 419-431. by Clara C. Elbers, Kristel R. van Eijk, Lude Franke, et al.Flip Mulder, Yvonne T. van der Schouw, Cisca Wijmenga, N. Charlotte Onland-Moret posted to pathway-analysis gwas by shikin on 2009-11-24 20:38:56 as along with 7 people and 1 group daed guhjy thomaskelder ptrobajo AlexanderPico jdbowes pkonings ConklinLab
	High-resolution mapping of expression-QTLs yields insight into human gene regulation. [My Copy] PLoS genetics, Vol. 4, No. 10. (10 October 2008), e1000214. by Jean-Baptiste B. Veyrieras, Sridhar Kudaravalli, Su Yeon Y. Kim, et al.Emmanouil T. Dermitzakis, Yoav Gilad, Matthew Stephens, Jonathan K. Pritchard posted to snp gwas gene_expression gene_association by shikin on 2009-11-24 20:35:28 as along with 9 people sameersoi athma guhjy bertrandservin xingxu lp2 larbiza caseybrown djkt
	Statistical methods of background correction for Illumina BeadArray data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 751-757. by Yang Xie, Xinlei Wang, Michael Story posted to statistics microarray illumina bg_correction bayesian by shikin on 2009-11-17 15:45:44 as along with 8 people and 1 group jfr ptrobajo welliegirl rdiaz Stew heliopais dswan guhjy Bioinformatics - CRUK
	Statistical issues in the analysis of DNA Copy Number Variations. [My Copy] International journal of computational biology and drug design, Vol. 1, No. 4. (1 January 2008), pp. 368-395. by Nathan E. Wineinger, Richard E. Kennedy, Stephen W. Erickson, Mary K. Wojczynski, Carl E. Bruder, Hemant K. Tiwari posted to statistics cnv by shikin on 2009-10-28 14:14:31 as
	Genome-wide association studies for common diseases and complex traits. [My Copy] Nature reviews. Genetics, Vol. 6, No. 2. (01 February 2005), pp. 95-108. by Joel N. Hirschhorn, Mark J. Daly posted to gwas by shikin on 2009-10-26 16:52:11 as along with 11 people and 1 group fisherp ekostem Zephyrus cheyloveday misonneh pengchy caldavis oilcan indigoviolet massivemayhem dbgrant EisenLab
	Bayesian statistical methods for genetic association studies. [My Copy] Nature reviews. Genetics, Vol. 10, No. 10. (01 October 2009), pp. 681-690. by Matthew Stephens, David J. Balding posted to gwas bayesian by shikin on 2009-10-26 16:48:54 as along with 24 people and 1 group welliegirl Geknitics heliopais Zephyrus nuin matjes pkonings fastjoe23 guhjy maren gregdavisfromnj natstreet TRHvidsten zufar n00c lwaldron megraw rdiaz kimorley leliavski misonneh qayub daforerog druvus Journal picks
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to statistics method gene_expression by shikin on 2009-10-02 13:53:02 as along with 12 people and 1 group jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by Johannes Rainer, Fatima Sanchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski posted to r microarray gene_expression by shikin on 2009-09-28 15:29:19 as along with 5 people daforerog guhjy rschulz jfr rdiaz
	Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (22 April 2007), pp. 485-499. by Benilton Carvalho, Henrik Bengtsson, Terence P. Speed, Rafael A. Irizarry posted to snp illumina affy by shikin on 2009-09-28 13:25:51 as along with 4 people daforerog GeeSharpMinor guhjy jfr
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted to snp r illumina by shikin on 2009-09-28 11:50:54 as along with 7 people carolep jsatkosk daforerog djkt dswan rdiaz torfinnnome
	Recent developments in public proteomic MS repositories and pipelines. [My Copy] Proteomics, Vol. 9, No. 4. (February 2009), pp. 861-881. by Jennifer A. Mead, Luca Bianco, Conrad Bessant posted to proteomics method database by shikin on 2009-09-24 16:34:43 as along with 2 people guhjy fishtank
	Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 16. (15 August 2007), pp. 2063-2072. by R. Maglietta, A. Piepoli, D. Catalano, et al.F. Licciulli, M. Carella, S. Liuni, G. Pesole, F. Perri, N. Ancona posted to statistics gsea enrichment classification by shikin on 2009-09-14 11:50:51 as along with 1 person guhjy
	Array comparative genomic hybridization and its applications in cancer. [My Copy] Nature genetics, Vol. 37 Suppl (June 2005) by Daniel Pinkel, Donna G. Albertson posted to cnv cancer by shikin on 2009-09-08 18:33:13 as along with 7 people and 3 groups textoris rfrousse pcahan1 archroad rdiaz tvdbulck frohike Institut_Hemato_Oncologie_Pediatrique Neuroblastome_SFCE Bioinformatics
	Analysis of Array-CGH Data Using the R and Bioconductor Software Suite. [My Copy] Comparative and functional genomics (2009) by Winfried A. Hofmann, Anja Weigmann, Marcel Tauscher, et al.Britta Skawran, Tim Focken, Reena Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann posted to r cnv by shikin on 2009-09-03 14:10:41 as along with 3 people and 1 group giovenko rdiaz jandot Journal picks
	Copy number variation in the human genome and its implication in autoimmunity. [My Copy] Clinical and experimental immunology, Vol. 156, No. 1. (April 2009), pp. 12-16. by H. Schaschl, T. J. Aitman, T. J. Vyse posted to psoriasis by shikin on 2009-07-14 17:09:19 as along with 6 people leemachado sahrazanetti rdiaz noushin Zephyrus pkonings
	New data analysis and mining approaches identify unique proteome and transcriptome markers of susceptibility to autoimmune diabetes. [My Copy] Molecular & cellular proteomics : MCP, Vol. 5, No. 2. (February 2006), pp. 293-305. by I. C. Gerling, S. Singh, N. I. Lenchik, D. R. Marshall, J. Wu posted to gene_expression meta-analysis pathway-analysis proteomics by shikin on 2009-07-06 16:55:40 as
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted to cnv gene_expression meta-analysis by shikin on 2009-07-06 11:50:36 as along with 8 people and 1 group daed zufar ptrobajo rdiaz dswan guhjy lwaldron barriot Bioinformatics
	Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 21. (24 May 2005), pp. 7653-7658. by Pei-Zheng Z. Zheng, Kan-Kan K. Wang, Qun-Ye Y. Zhang, et al.Qiu-Hua H. Huang, Yan-Zhi Z. Du, Qing-Hua H. Zhang, Da-Kai K. Xiao, Shu-Hong H. Shen, Sandrine Imbeaud, Eric Eveno, Chun-Jun J. Zhao, Yu-Long L. Chen, Hui-Yong Y. Fan, Samuel Waxman, Charles Auffray, Gang Jin, Sai-Juan J. Chen, Zhu Chen, Ji Zhang posted to cancer gene_expression meta-analysis proteomics by shikin on 2009-06-29 13:27:50 as along with 1 person textoris
	Multiple-laboratory comparison of microarray platforms. [My Copy] Nature methods, Vol. 2, No. 5. (21 May 2005), pp. 345-350. by Rafael A. Irizarry, Daniel Warren, Forrest Spencer, et al.Irene F. Kim, Shyam Biswal, Bryan C. Frank, Edward Gabrielson, Joe G. Garcia, Joel Geoghegan, Gregory Germino, Constance Griffin, Sara C. Hilmer, Eric Hoffman, Anne E. Jedlicka, Ernest Kawasaki, Francisco Martínez-Murillo, Laura Morsberger, Hannah Lee, David Petersen, John Quackenbush, Alan Scott, Michael Wilson, Yanqin Yang, Shui Qing Q. Ye, Wayne Yu posted to method microarray by shikin on 2009-06-02 12:20:39 as along with 7 people and 2 groups daforerog floatingpoint textoris balajis yoh nickluscombe mariakmejia GeneGo EBI-regulation
	Learning to get along despite struggling to get by [My Copy] Genome Biology, Vol. 10, No. 5. (2009), 218. by Elizabeth Ostrowski, Gad Shaulsky posted to evolution by shikin on 2009-05-26 18:33:08 as along with 1 person tomhebbron
	Improved precision and accuracy for microarrays using updated probe set definitions [My Copy] BMC Bioinformatics, Vol. 8 (08 February 2007), 48. by Rickard Sandberg, Ola Larsson posted to affy annotation microarray by shikin on 2009-05-22 17:18:46 as along with 7 people lwaldron jfr gpalidwor shigepong ghattem heliopais bertelsen
	A scalable method for integration and functional analysis of multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2890-2897. by Huttenhower, Curtis, Hibbs, et al. Matt, Myers, Chad, Troyanskaya, G. Olga posted to meta-analysis method microarray by shikin on 2009-05-06 19:32:32 as along with 3 people Zephyrus lwaldron zufar
	Automation of in-silico data analysis processes through workflow management systems [My Copy] Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 57-68. by Paolo Romano posted to workflow by shikin on 2009-04-22 11:34:43 as along with 9 people alemhnan mtaschuk bertelsen ilyashl daforerog druvus guhjy moborg seemu
	Taverna: a tool for the composition and enactment of bioinformatics workflows. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 17. (22 November 2004), pp. 3045-3054. by Tom Oinn, Matthew Addis, Justin Ferris, et al.Darren Marvin, Martin Senger, Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li posted to workflow by shikin on 2009-04-22 11:32:10 as along with 23 people and 1 group kshameer isimpson mtaschuk djohnson egonw pekrau gquigley thegoose2 tjtaylor oeli4321 zufar niallhaslam druvus irenas guhjy moborg wnpx dullhunk fisherp marpin nicklynch tharris alanrw dbk-lab
	A flexible two-stage procedure for identifying gene sets that are differentially expressed. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1019-1025. by Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, Warren J. Ewens posted to gene_expression gsea pathway-analysis statistics by shikin on 2009-04-08 12:37:29 as along with 6 people jfr zufar renatomilani dswan guhjy rdiaz
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted to solexa statistics by shikin on 2009-04-08 12:26:03 as along with 16 people and 2 groups jwfoley hzoltan heliopais stubrown GustavoLacerda woodson8 ThomasDOtto stajich guhjy ghattem djkt pengchy vplagnol rschulz jmcq GeeSharpMinor Mycology SIMR bioinformatics
	Gene-set approach for expression pattern analysis [My Copy] Brief Bioinform, Vol. 9, No. 3. (1 May 2008), pp. 189-197. by Dougu Nam, Seon-Young Kim posted to gsea pathway-analysis systems_biology by shikin on 2009-04-03 20:10:44 as along with 18 people bertelsen srp33 tonamswish kemalpak ipark-kaist ihpark ptrobajo guhjy seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to affy microarray normalization statistics by shikin on 2009-03-31 16:40:12 as along with 22 people jperkins vplagnol brianb neils ipark-kaist michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted to affy normalization statistics by shikin on 2009-03-31 16:38:56 as along with 27 people and 4 groups jperkins VGreiff lwaldron jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj vertikalist MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
	Integrated analysis of breast cancer cell lines reveals unique signaling pathways [My Copy] Genome Biology, Vol. 10, No. 3. (25 March 2009), R31. by Laura Heiser, Nicholas Wang, Carolyn Talcott, et al.Keith Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara Weber, Sylvie Laquerre, Jeffrey Jackson, Richard Wooster, Wen Kuo, Joe Gray, Paul Spellman posted to breast cancer pathway-analysis systems_biology by shikin on 2009-03-25 20:02:45 as along with 4 people and 1 group ipark-kaist jfr thegoose Stew Bioinformatics - CRUK
	Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 32. by Wen H. Lin, Wei C. Liu, Ming J. Hwang posted to network ppi systems_biology by shikin on 2009-03-25 20:01:56 as along with 1 person guhjy
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to meta-analysis systems_biology by shikin on 2009-03-25 13:56:42 as along with 21 people and 4 groups daforerog jimineep ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

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