shikin's affy [18 articles] Export

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	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to snp cnv affy by shikin on 2009-11-13 17:42:47 as along with 20 people and 1 group vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted to snp method cnv affy by shikin on 2009-11-12 18:02:50 as along with 14 people sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711. by Rebeqa Gunnarsson, Johan Staaf, Mattias Jansson, et al.Anne Marie M. Ottesen, Hanna Göransson, Ulrika Liljedahl, Ulrik Ralfkiaer, Mahmoud Mansouri, Anne Mette M. Buhl, Karin Ekström E. Smedby, Henrik Hjalgrim, Ann-Christine C. Syvänen, Ake Borg, Anders Isaksson, Jesper Jurlander, Gunnar Juliusson, Richard Rosenquist posted to snp illumina cnv affy by shikin on 2009-10-29 18:51:56 as along with 1 person jfr
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to snp r cnv affy by shikin on 2009-10-27 17:36:28 as along with 5 people djkt pkonings rdiaz daforerog neils
	A genotype calling algorithm for affymetrix SNP arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 1. (1 January 2006), pp. 7-12. by Nusrat Rabbee, Terence P. Speed posted to statistics snp affy by shikin on 2009-10-26 16:13:35 as along with 6 people daforerog pcahan1 jfr beniltoncarvalho ashandanj djkt
	Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression. [My Copy] Journal of biomolecular techniques : JBT, Vol. 19, No. 2. (April 2008), pp. 122-128. by Meijuan Li, Cavan Reilly posted to qc microarray affy by shikin on 2009-09-28 15:51:15 as along with 1 person jfr
	Unsupervised assessment of microarray data quality using a Gaussian mixture model. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 191. by Brian E. Howard, Beate Sick, Steffen Heber posted to qc bayesian affy by shikin on 2009-09-28 14:46:35 as along with 3 people rdiaz lwaldron renatomilani
	Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (22 April 2007), pp. 485-499. by Benilton Carvalho, Henrik Bengtsson, Terence P. Speed, Rafael A. Irizarry posted to snp illumina affy by shikin on 2009-09-28 13:25:51 as along with 4 people daforerog GeeSharpMinor guhjy jfr
	GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1978-1979. by Lasse Folkersen, Diego Diez, Craig E. Wheelock, et al.Jesper Z. Haeggström, Susumu Goto, Per Eriksson, Anders Gabrielsen posted to affy gene_expression microarray by shikin on 2009-07-20 10:24:14 as along with 2 people and 1 group dswan guhjy Bioinformatics
	A Model-Based Background Adjustment for Oligonucleotide Expression Arrays [My Copy] Journal of the American Statistical Association, Vol. 99, No. 468., 909. by Zhijin Wu, Rafael A. Irizarry, Robert Gentleman, Francisco Martinez-Murillo, Forrest Spencer posted to affy microarray statistics by shikin on 2009-05-29 13:13:55 as along with 9 people and 1 group jperkins schwalb karinlag GeeSharpMinor RMGraze thomlo nicholso jo_davies bertelsen GeneGo
	Improved precision and accuracy for microarrays using updated probe set definitions [My Copy] BMC Bioinformatics, Vol. 8 (08 February 2007), 48. by Rickard Sandberg, Ola Larsson posted to affy annotation microarray by shikin on 2009-05-22 17:18:46 as along with 7 people lwaldron jfr gpalidwor shigepong ghattem heliopais bertelsen
	A new summarization method for affymetrix probe level data [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949. by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer posted to affy method normalization statistics by shikin on 2009-05-06 19:29:29 as along with 3 people bertelsen cassj ghattem
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to affy microarray normalization statistics by shikin on 2009-03-31 16:40:12 as along with 22 people jperkins vplagnol brianb neils ipark-kaist michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Summaries of Affymetrix GeneChip probe level data [My Copy] Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted to affy gene_expression microarray normalization statistics by shikin on 2009-03-31 16:39:31 as along with 17 people jperkins daforerog lwaldron dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz bertelsen srp33
	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted to affy normalization statistics by shikin on 2009-03-31 16:38:56 as along with 27 people and 4 groups jperkins VGreiff lwaldron jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj vertikalist MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
	Combining Affymetrix microarray results. [My Copy] BMC bioinformatics, Vol. 6 (2005) by John R. Stevens, R. W. Doerge posted to affy meta-analysis rank-aggregation by shikin on 2009-02-24 18:58:32 as along with 5 people daforerog lwaldron floatingpoint talponer jfr
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted to affy microarray by shikin on 2008-06-02 15:09:44 as along with 11 people and 2 groups rmk lwaldron giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet bertelsen waszak Bioinformatics GeneGo
	Probe set algorithms: is there a rational best bet? [My Copy] BMC bioinformatics, Vol. 7 (30 August 2006), 395. by Jinwook Seo, Eric P. Hoffman posted to affy microarray normalization by shikin on 2008-05-06 17:59:11 as along with 7 people ericrpaquet lwaldron heliopais jfr ghattem rschulz bertelsen

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's affy [18 articles] Export

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