shikin's cnv [26 articles] Export

Recent papers added to shikin's library classified by the tag cnv. You can also see everyone's cnv.

	Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R128. by Tatiana Popova, Elodie Manie, Dominique S. Lyonnet, Guillem Rigaill, Emmanuel Barillot, Marc H. Stern posted to snp microarray cnv by shikin on 2009-11-19 18:00:46 as
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to snp cnv affy by shikin on 2009-11-13 17:42:47 as along with 20 people and 1 group vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted to snp method cnv affy by shikin on 2009-11-12 18:02:50 as along with 14 people sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711. by Rebeqa Gunnarsson, Johan Staaf, Mattias Jansson, et al.Anne Marie M. Ottesen, Hanna Göransson, Ulrika Liljedahl, Ulrik Ralfkiaer, Mahmoud Mansouri, Anne Mette M. Buhl, Karin Ekström E. Smedby, Henrik Hjalgrim, Ann-Christine C. Syvänen, Ake Borg, Anders Isaksson, Jesper Jurlander, Gunnar Juliusson, Richard Rosenquist posted to snp illumina cnv affy by shikin on 2009-10-29 18:51:56 as along with 1 person jfr
	Statistical issues in the analysis of DNA Copy Number Variations. [My Copy] International journal of computational biology and drug design, Vol. 1, No. 4. (1 January 2008), pp. 368-395. by Nathan E. Wineinger, Richard E. Kennedy, Stephen W. Erickson, Mary K. Wojczynski, Carl E. Bruder, Hemant K. Tiwari posted to statistics cnv by shikin on 2009-10-28 14:14:31 as
	Comparison of comparative genomic hybridization technologies across microarray platforms. [My Copy] Journal of biomolecular techniques : JBT, Vol. 20, No. 2. (April 2009), pp. 135-151. by Susan D. Hester, Laura Reid, Norma Nowak, et al.Wendell D. Jones, Joel S. Parker, Kevin Knudtson, William Ward, Jay Tiesman, Nancy D. Denslow posted to cnv by shikin on 2009-10-27 17:49:24 as along with 2 people rdiaz idonaldson
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to snp r cnv affy by shikin on 2009-10-27 17:36:28 as along with 5 people djkt pkonings rdiaz daforerog neils
	High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping. [My Copy] Genome research, Vol. 16, No. 9. (September 2006), pp. 1136-1148. by Daniel A. Peiffer, Jennie M. Le, Frank J. Steemers, et al.Weihua Chang, Tony Jenniges, Francisco Garcia, Kirt Haden, Jiangzhen Li, Chad A. Shaw, John Belmont, Sau Wai W. Cheung, Richard M. Shen, David L. Barker, Kevin L. Gunderson posted to snp microarray illumina cnv by shikin on 2009-10-27 17:24:03 as along with 3 people baizhang jfr jackjackjjj
	Systematic assessment of copy number variant detection via genome-wide SNP genotyping. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1199-1203. by Gregory M. Cooper, Troy Zerr, Jeffrey M. Kidd, Evan E. Eichler, Deborah A. Nickerson posted to snp microarray cnv by shikin on 2009-10-27 17:23:18 as along with 12 people and 1 group sameersoi daforerog psique maren pengchy vplagnol waszak caseybrown Zephyrus misonneh rdiaz guhjy Roswell Cancer Crosstalk
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to snp microarray cnv by shikin on 2009-10-27 16:51:13 as along with 10 people and 4 groups rdiaz waszak jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	Computational methods for identification of recurrent copy number alteration patterns by array CGH. [My Copy] Cytogenetic and genome research, Vol. 123, No. 1-4. (2008), pp. 343-351. by S. P. Shah posted to cnv by shikin on 2009-10-08 15:24:35 as along with 1 person rdiaz
	Segmentation and Estimation for SNP Microarrays: A Bayesian Multiple Change-Point Approach. [My Copy] Biometrics (17 September 2009) by Yu Chuan C. Tai, Mark N. Kvale, John S. Witte posted to snp method cnv bayesian by shikin on 2009-09-28 14:24:46 as along with 1 person rdiaz
	Array comparative genomic hybridization and its applications in cancer. [My Copy] Nature genetics, Vol. 37 Suppl (June 2005) by Daniel Pinkel, Donna G. Albertson posted to cnv cancer by shikin on 2009-09-08 18:33:13 as along with 7 people and 3 groups textoris rfrousse pcahan1 archroad rdiaz tvdbulck frohike Institut_Hemato_Oncologie_Pediatrique Neuroblastome_SFCE Bioinformatics
	Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays. [My Copy] BMC genomics, Vol. 8, No. 1. (2007) by Herbert Auer, David L. Newsom, Norma J. Nowak, et al.Kirk M. McHugh, Sunita Singh, Chack-Yung Y. Yu, Yan Yang, Gail D. Wenger, Julie M. Gastier-Foster, Karl Kornacker posted to microarray cnv by shikin on 2009-09-08 17:30:46 as along with 1 person and 1 group jfr Bioinformatics
	Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 20. (1 October 2002), pp. 12963-12968. by Jonathan R. Pollack, Therese Sørlie, Charles M. Perou, et al.Christian A. Rees, Stefanie S. Jeffrey, Per E. Lonning, Robert Tibshirani, David Botstein, Anne-Lise L. Børresen-Dale, Patrick O. Brown posted to cnv cancer breast by shikin on 2009-09-08 17:25:13 as along with 3 people frohike rdiaz bioguru2000
	BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 9. (1 May 2006), pp. 1144-1146. by J. C. Marioni, N. P. Thorne, S. Tavaré posted to r hmm cnv by shikin on 2009-09-07 10:35:23 as along with 2 people talponer ellakat
	Algorithms for Calling Gains and Losses in Array CGH Data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 99-116. by Pei Wang posted to method cnv by shikin on 2009-09-03 18:47:08 as along with 1 person rdiaz
	Spatial smoothing and hot spot detection for CGH data using the fused lasso. [My Copy] Biostatistics (Oxford, England), Vol. 9, No. 1. (January 2008), pp. 18-29. by Robert Tibshirani, Pei Wang posted to r cnv by shikin on 2009-09-03 17:13:29 as along with 2 people rdiaz debasis
	A method for calling gains and losses in array CGH data. [My Copy] Biostatistics (Oxford, England), Vol. 6, No. 1. (January 2005), pp. 45-58. by Pei Wang, Young Kim, Jonathan Pollack, Balasubramanian Narasimhan, Robert Tibshirani posted to r cnv by shikin on 2009-09-03 16:14:17 as along with 1 person noushin
	Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 18. (12 December 2004), pp. 3413-3422. by Philippe Hupé, Nicolas Stransky, Jean-Paul P. Thiery, François Radvanyi, Emmanuel Barillot posted to r cnv by shikin on 2009-09-03 15:04:21 as along with 3 people askrajiv jfr OscarRueda
	Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 19. (1 October 2005), pp. 3763-3770. by Weil R. Lai, Mark D. Johnson, Raju Kucherlapati, Peter J. Park posted to method cnv by shikin on 2009-09-03 15:01:49 as along with 6 people and 1 group pcahan1 gpalidwor rdiaz ma_ko OscarRueda jackjackjjj Bioinformatics
	Analysis of Array-CGH Data Using the R and Bioconductor Software Suite. [My Copy] Comparative and functional genomics (2009) by Winfried A. Hofmann, Anja Weigmann, Marcel Tauscher, et al.Britta Skawran, Tim Focken, Reena Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann posted to r cnv by shikin on 2009-09-03 14:10:41 as along with 3 people and 1 group giovenko rdiaz jandot Journal picks
	Circular binary segmentation for the analysis of array-based DNA copy number data. [My Copy] Biostatistics (Oxford, England), Vol. 5, No. 4. (October 2004), pp. 557-572. by Adam B. Olshen, E. S. Venkatraman, Robert Lucito, Michael Wigler posted to statistics method cnv by shikin on 2009-09-03 14:10:09 as along with 1 person noushin
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted to breast cancer cnv genego synergy systems_biology by shikin on 2009-07-06 14:09:04 as along with 4 people and 2 groups jfr ipark-kaist chrisamiller Zephyrus GeneGo Breast Cancer Reading Club
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted to cnv gene_expression meta-analysis by shikin on 2009-07-06 11:50:36 as along with 8 people and 1 group daed zufar ptrobajo rdiaz dswan guhjy lwaldron barriot Bioinformatics
	The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. [My Copy] Nature genetics (8 March 2009) by Patrick Cahan, Yedda Li, Masayo Izumi, Timothy A A. Graubert posted to cnv gene_expression genomics by shikin on 2009-04-03 20:06:32 as along with 5 people rdiaz psique fenghezi djkt jdbowes

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's cnv [26 articles] Export

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