shikin's genego [29 articles] Export

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	Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform [My Copy] Protein Networks and Pathway Analysis, Vol. 563 (2009), pp. 177-196. by Yuri Nikolsky, Eugene Kirillov, Roman Zuev, Eugene Rakhmatulin, Tatiana Nikolskaya posted to genego by shikin on 2009-11-06 17:31:55 as along with 1 group GeneGo
	Network analysis of human glaucomatous optic nerve head astrocytes. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 24. by Tatiana Nikolskaya, Yuri Nikolsky, Tatiana Serebryiskaya, et al.Svetlana Zvereva, Eugene Sviridov, Zoltan Dezso, Eugene Rahkmatulin, Richard J. Brennan, Nick Yankovsky, Sanjoy K. Bhattacharya, Olga Agapova, M. Rosario Hernandez, Valery I. Shestopalov posted to pathway-analysis genego by shikin on 2009-11-06 17:29:51 as along with 1 person and 1 group tonamswish GeneGo
	[Transcription factor AP-1 components as a psoriasis candidate genes] [My Copy] Molekuliarnaia biologiia, Vol. 41, No. 6. (c 2007), pp. 1069-1080. by E. S. Pirusian, T. A. Nikol'skaia, R. M. Abdeev, S. A. Bruskin posted to psoriasis pathway-analysis genego gene_expression ap1 by shikin on 2009-09-25 09:41:39 as along with 1 group GeneGo
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted to breast cancer cnv genego synergy systems_biology by shikin on 2009-07-06 14:09:04 as along with 4 people and 2 groups jfr ipark-kaist chrisamiller Zephyrus GeneGo Breast Cancer Reading Club
	A comprehensive functional analysis of tissue specificity of human gene expression. [My Copy] BMC biology, Vol. 6, No. 1. (2008) by Z. Dezso, Y. Nikolsky, E. Sviridov, et al.W. Shi, T. Serebriyskaya, D. Dosymbekov, A. Bugrim, E. Rakhmatulin, R. J. Brennan, A. Guryanov, K. Li, J. Blake, R. R. Samaha, T. Nikolskaya posted to gene_expression genego pathway-analysis by shikin on 2009-07-06 12:35:42 as along with 8 people and 1 group dolchan grahamc jfr guhjy acanario inesdesantiago imina GeeSharpMinor GeneGo
	Elucidation of differential response networks from toxicogenomics data [My Copy] (23 May 2008) by Z. Dezso, R. Welch, V. Kazandaev, et al.A. Naito, J. Fuscoe, C. Melvin, Y. Dragan, Y. Nikolsky, T. Nikolskaya, A. Bugrim posted to genego pathway-analysis by shikin on 2009-06-16 11:15:10 as along with 1 group GeneGo
	Identifying disease-specific genes based on their topological significance in protein networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 36. by Zoltan Dezso, Yuri Nikolsky, Tatiana Nikolskaya, et al.Jeremy Miller, David Cherba, Craig Webb, Andrej Bugrim posted to genego network by shikin on 2009-04-09 18:46:44 as along with 5 people idonaldson Keywan guhjy renatomilani kshameer
	Regulation of in situ to invasive breast carcinoma transition. [My Copy] Cancer cell, Vol. 13, No. 5. (May 2008), pp. 394-406. by M. Hu, J. Yao, D. K. Carroll, et al.S. Weremowicz, H. Chen, D. Carrasco, A. Richardson, S. Violette, T. Nikolskaya, Y. Nikolsky, E. L. Bauerlein, W. C. Hahn, R. S. Gelman, C. Allred, M. J. Bissell, S. Schnitt, K. Polyak posted to breast cancer genego by shikin on 2008-12-12 16:32:26 as along with 1 group GeneGo
	Cell type-specific DNA methylation patterns in the human breast. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (9 September 2008) by Noga Bloushtain-Qimron, Jun Yao, Eric L L. Snyder, et al.Michail Shipitsin, Lauren L L. Campbell, Sendurai A A. Mani, Min Hu, Haiyan Chen, Vadim Ustyansky, Jessica E E. Antosiewicz, Pedram Argani, Marc K K. Halushka, James A A. Thomson, Paul Pharoah, Angel Porgador, Saraswati Sukumar, Ramon Parsons, Andrea L L. Richardson, Martha R R. Stampfer, Rebecca S S. Gelman, Tatiana Nikolskaya, Yuri Nikolsky, Kornelia Polyak posted to cancer genego genomics methylation by shikin on 2008-09-22 12:36:23 as along with 1 person and 1 group misonneh GeneGo
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to cancer genego genomics systems_biology by shikin on 2008-09-08 14:08:41 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shigepong Roswell Cancer Crosstalk GeneGo
	Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses [My Copy] Science (4 September 2008), 1164368. by Sian Jones, Xiaosong Zhang, D. Williams Parsons, et al.Jimmy C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E. Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer genego genomics pancreas systems_biology by shikin on 2008-09-08 13:52:48 as along with 18 people and 3 groups zufar jbhiatt dolchan wimufi jo_davies srp33 jfr whh98 roys cmzmasek thomaskelder fongkoh AlexanderPico SaraNasser renatomilani brianb songpku giovenko ConklinLab GeneGo Roswell Cancer Crosstalk
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer genego genomics systems_biology by shikin on 2008-09-08 13:52:08 as along with 15 people and 2 groups VGreiff stubrown Zephyrus zufar dolchan frohike caseybrown wimufi jfr srp33 renatomilani brianb aheilbut songpku giovenko GeneGo Roswell Cancer Crosstalk
	A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism. [My Copy] Drug metabolism and disposition: the biological fate of chemicals, Vol. 33, No. 3. (March 2005), pp. 474-481. by S. Ekins, E. Kirillov, E. A. Rakhmatulin, T. Nikolskaya posted to genego network systems_biology toxicology by shikin on 2008-05-04 13:19:07 as along with 1 group GeneGo
	Pathway mapping tools for analysis of high content data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350. by S. Ekins, Y. Nikolsky, A. Bugrim, E. Kirillov, T. Nikolskaya posted to genego pathway-analysis systems_biology by shikin on 2008-05-04 13:09:52 as along with 3 people and 1 group cgaugain thomaskelder AlexanderPico GeneGo
	Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms [My Copy] Xenobiotica, Vol. 36, No. 10-11. (8220), pp. 877-901. by Ekins, S., Bugrim, et al. A., Brovold, L., Kirillov, E., Nikolsky, Y., Rakhmatulin, E., Sorokina, S., Ryabov, A., Serebryiskaya, T., Melnikov, A., Metz, J., Nikolskaya, T. posted to genego method network systems_biology toxicology by shikin on 2008-05-04 13:08:06 as along with 1 group GeneGo
	Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis [My Copy] Genome Biology, Vol. 8, No. 9. (2007) by Robert Kleemann, Lars Verschuren, Marjan van Erk, et al.Yuri Nikolsky, Nicole Cnubben, Elwin Verheij, Age Smilde, Henk Hendriks, Susanne Zadelaar, Graham Smith, Valery Kaznacheev, Tatiana Nikolskaya, Anton Melnikov, Eva H. Camejo, Jan van der Greef, Ben van Ommen, Teake Kooistra posted to genego systems_biology by shikin on 2008-05-04 13:04:56 as along with 2 people and 1 group aconesa vinithepooh GeneGo
	Genetics of gene expression and its effect on disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 423-428. by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, et al.Amy S. Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, G. Bragi Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H. Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P. Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G. Gislason, Tryggvi Stefansson, Bjorn G. Leifsson, Unnur Thorsteinsdottir, John R. Lamb, Jeffrey R. Gulcher, Marc L. Reitman, Augustine Kong, Eric E. Schadt, Kari Stefansson posted to gene_expression genego genomics systems_biology by shikin on 2008-03-19 11:29:37 as along with 20 people and 2 groups nicholso Zephyrus greg daforerog athma zufar druvus brianb djkt lp2 jo_davies caseybrown ptrobajo vplagnol smbe2008 echinotrix natstreet sanchezbuelna guhjy Borelli 4th_floor_JC GeneGo
	Early prediction of drug metabolism and toxicity: systems biology approach and modeling [My Copy] Drug Discovery Today, Vol. 9, No. 3. (1 February 2004), pp. 127-135. by A. Bugrim posted to genego systems_biology toxicology by shikin on 2008-02-18 15:30:46 as along with 2 people stharward kuhn
	Overlapping gene expression profiles of model compounds provide opportunities for immunotoxicity screening. [My Copy] Toxicol Appl Pharmacol, Vol. 226, No. 1. (1 January 2008), pp. 46-59. by K. A. Baken, J. L. Pennings, M. J. Jonker, et al.M. M. Schaap, A. de Vries, H. van Steeg, T. M. Breit, H. van Loveren posted to genego systems_biology toxicology by shikin on 2008-02-18 15:25:59 as along with 1 person Zephyrus
	Gene Expression Profiling in Lung Tissues from Mice Exposed to Cigarette Smoke, Lipopolysaccharide, or Smoke Plus Lipopolysaccharide by Inhalation [My Copy] Inhalation Toxicology, Vol. 18, No. 8. (July 2006), pp. 555-568. by Meng, Q., Gideon, et al. K., Harbo, S., Renne, R., Lee, M., Brys, A., Jones, R. posted to genego systems_biology by shikin on 2008-02-18 15:00:48 as
	Defining the transcriptome of accelerated and replicatively senescent keratinocytes reveals links to differentiation, interferon signaling, and Notch related pathways. [My Copy] J Cell Biochem, Vol. 98, No. 2. (15 May 2006), pp. 394-408. by R. J. Perera, S. Koo, C. F. Bennett, et al.N. M. Dean, N. Gupta, J. Z. Qin, B. J. Nickoloff posted to genego pathway-analysis systems_biology by shikin on 2008-02-18 14:52:02 as
	A novel method for generation of signature networks as biomarkers from complex high throughput data. [My Copy] Toxicol Lett, Vol. 158, No. 1. (28 July 2005), pp. 20-29. by Y. Nikolsky, S. Ekins, T. Nikolskaya, A. Bugrim posted to genego systems_biology by shikin on 2008-02-18 14:46:29 as
	Transcriptional networks in plasmacytoid dendritic cells stimulated with synthetic TLR 7 agonists [My Copy] BMC Immunology, Vol. 8 (12 October 2007), 26. by Woubalem Birmachu, Raymond M. Gleason, Barbara J. Bulbulian, et al.Christie L. Riter, John P. Vasilakos, Kenneth E. Lipson, Yuri Nikolsky posted to genego systems_biology by shikin on 2008-02-18 14:42:56 as
	Biological networks and analysis of experimental data in drug discovery. [My Copy] Drug discovery today, Vol. 10, No. 9. (1 May 2005), pp. 653-662. by Yuri Nikolsky, Tatiana Nikolskaya, Andrej Bugrim posted to genego systems_biology by shikin on 2008-02-18 14:41:36 as
	Application of transcriptional and biological network analyses in mouse germ-cell transcriptomes. [My Copy] Genomics, Vol. 88, No. 1. (July 2006), pp. 18-33. by T. L. Lee, D. Alba, V. Baxendale, O. M. Rennert, W. Y. Chan posted to genego systems_biology by shikin on 2008-02-18 14:38:28 as along with 1 person altotor
	Different signaling pathways in the livers of patients with chronic hepatitis B or chronic hepatitis C. [My Copy] Hepatology, Vol. 44, No. 5. (November 2006), pp. 1122-1138. by M. Honda, T. Yamashita, T. Ueda, H. Takatori, R. Nishino, S. Kaneko posted to genego systems_biology by shikin on 2008-02-18 14:32:53 as
	Molecular dissection of hyperdiploid multiple myeloma by gene expression profiling. [My Copy] Cancer Res, Vol. 67, No. 7. (1 April 2007), pp. 2982-2989. by W. J. Chng, S. Kumar, S. Vanwier, et al.G. Ahmann, T. Price-Troska, K. Henderson, T. H. Chung, S. Kim, G. Mulligan, B. Bryant, J. Carpten, M. Gertz, S. V. Rajkumar, M. Lacy, A. Dispenzieri, R. Kyle, P. Greipp, P. L. Bergsagel, R. Fonseca posted to cancer genego systems_biology by shikin on 2008-02-18 14:30:10 as
	Molecular definition of breast tumor heterogeneity. [My Copy] Cancer Cell, Vol. 11, No. 3. (March 2007), pp. 259-273. by M. Shipitsin, L. L. Campbell, P. Argani, et al.S. Weremowicz, N. Bloushtain-Qimron, J. Yao, T. Nikolskaya, T. Serebryiskaya, R. Beroukhim, M. Hu, M. K. Halushka, S. Sukumar, L. M. Parker, K. S. Anderson, L. N. Harris, J. E. Garber, A. L. Richardson, S. J. Schnitt, Y. Nikolsky, R. S. Gelman, K. Polyak posted to cancer genego systems_biology by shikin on 2008-02-18 14:20:35 as along with 3 people Zephyrus guhjy jfr
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted to cancer genego systems_biology by shikin on 2008-02-18 14:19:27 as along with 17 people and 1 group zufar ssgong daed guhjy tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu renatomilani gwenknight cerami srp33 VUMCGenomics

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's genego [29 articles] Export

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