shikin's method [21 articles] Export

Recent papers added to shikin's library classified by the tag method. You can also see everyone's method.

	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted to snp method cnv affy by shikin on 2009-11-12 18:02:50 as along with 14 people sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Association methods in human genetics. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 404 (2007), pp. 431-460. by Carl D. Langefeld, Tasha E. Fingerlin posted to method gwas by shikin on 2009-10-26 16:01:05 as
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to statistics method gene_expression by shikin on 2009-10-02 13:53:02 as along with 12 people and 1 group jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	Segmentation and Estimation for SNP Microarrays: A Bayesian Multiple Change-Point Approach. [My Copy] Biometrics (17 September 2009) by Yu Chuan C. Tai, Mark N. Kvale, John S. Witte posted to snp method cnv bayesian by shikin on 2009-09-28 14:24:46 as along with 1 person rdiaz
	Recent developments in public proteomic MS repositories and pipelines. [My Copy] Proteomics, Vol. 9, No. 4. (February 2009), pp. 861-881. by Jennifer A. Mead, Luca Bianco, Conrad Bessant posted to proteomics method database by shikin on 2009-09-24 16:34:43 as along with 2 people guhjy fishtank
	Protein Identification by Tandem Mass Spectrometry and Sequence Database Searching [My Copy] Mass Spectrometry Data Analysis in Proteomics, Vol. 367 (2007), pp. 87-119. by Alexey I. Nesvizhskii posted to proteomics method by shikin on 2009-09-24 14:20:34 as along with 2 people nedwards fishtank
	Algorithms for Calling Gains and Losses in Array CGH Data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 99-116. by Pei Wang posted to method cnv by shikin on 2009-09-03 18:47:08 as along with 1 person rdiaz
	Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 19. (1 October 2005), pp. 3763-3770. by Weil R. Lai, Mark D. Johnson, Raju Kucherlapati, Peter J. Park posted to method cnv by shikin on 2009-09-03 15:01:49 as along with 6 people and 1 group pcahan1 gpalidwor rdiaz ma_ko OscarRueda jackjackjjj Bioinformatics
	Circular binary segmentation for the analysis of array-based DNA copy number data. [My Copy] Biostatistics (Oxford, England), Vol. 5, No. 4. (October 2004), pp. 557-572. by Adam B. Olshen, E. S. Venkatraman, Robert Lucito, Michael Wigler posted to statistics method cnv by shikin on 2009-09-03 14:10:09 as along with 1 person noushin
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to gene_expression method network by shikin on 2009-07-06 11:51:34 as along with 6 people and 1 group zufar dswan lwaldron rdiaz bertelsen erexhepa Bioinformatics
	Pre-processing of microarray data and analysis of differential expression. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 89-110. by Steffen Durinck posted to method microarray normalization r by shikin on 2009-06-02 19:07:38 as along with 3 people poirel jmcdonou klo
	Multiple-laboratory comparison of microarray platforms. [My Copy] Nature methods, Vol. 2, No. 5. (21 May 2005), pp. 345-350. by Rafael A. Irizarry, Daniel Warren, Forrest Spencer, et al.Irene F. Kim, Shyam Biswal, Bryan C. Frank, Edward Gabrielson, Joe G. Garcia, Joel Geoghegan, Gregory Germino, Constance Griffin, Sara C. Hilmer, Eric Hoffman, Anne E. Jedlicka, Ernest Kawasaki, Francisco Martínez-Murillo, Laura Morsberger, Hannah Lee, David Petersen, John Quackenbush, Alan Scott, Michael Wilson, Yanqin Yang, Shui Qing Q. Ye, Wayne Yu posted to method microarray by shikin on 2009-06-02 12:20:39 as along with 7 people and 2 groups daforerog floatingpoint textoris balajis yoh nickluscombe mariakmejia GeneGo EBI-regulation
	A scalable method for integration and functional analysis of multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2890-2897. by Huttenhower, Curtis, Hibbs, et al. Matt, Myers, Chad, Troyanskaya, G. Olga posted to meta-analysis method microarray by shikin on 2009-05-06 19:32:32 as along with 3 people Zephyrus lwaldron zufar
	A new summarization method for affymetrix probe level data [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949. by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer posted to affy method normalization statistics by shikin on 2009-05-06 19:29:29 as along with 3 people bertelsen cassj ghattem
	Estimating accuracy of RNA-Seq and microarrays with proteomics. [My Copy] BMC genomics, Vol. 10, No. 1. (16 April 2009), 161. by Xing Fu, Ning Fu, Song Guo, et al.Zheng Yan, Ying Xu, Hao Hu, Corinna Menzel, Wei Chen, Yixue Li, Rong Zeng, Philipp Khaitovich posted to method microarray proteomics sequencing solexa by shikin on 2009-04-17 12:36:39 as along with 7 people and 1 group hzoltan sjcockell GustavoLacerda guhjy burak dswan stajich Mycology
	The Cancer Biomedical Informatics Grid (caBIG): infrastructure and applications for a worldwide research community. [My Copy] Medinfo, Vol. 12, No. Pt 1. (2007), pp. 330-334. by posted to cancer genomics method temp by shikin on 2009-02-17 16:49:24 as along with 1 person hpiwowar
	Stochastic P systems and the simulation of biochemical processes with dynamic compartments. [My Copy] Bio Systems, Vol. 91, No. 3. (March 2008), pp. 458-472. by Antoine Spicher, Olivier Michel, Mikolaj Cieslak, Jean-Louis L. Giavitto, Przemyslaw Prusinkiewicz posted to kinetics_modeling method systems_biology by shikin on 2009-02-09 17:45:30 as along with 2 people cokelaer jvb
	Cost-effective strategies for completing the interactome [My Copy] Nat Meth, Vol. 6, No. 1. (14 January 2009), pp. 55-61. by Ariel S. Schwartz, Jingkai Yu, Kyle R. Gardenour, Russell L. Finley Jr, Trey Ideker posted to ideker method systems_biology by shikin on 2008-12-30 19:07:24 as along with 4 people lawraga guhjy mhamada eetadic
	Digital karyotyping. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 25. (10 December 2002), pp. 16156-16161. by T. L. Wang, C. Maierhofer, M. R. Speicher, et al.C. Lengauer, B. Vogelstein, K. W. Kinzler, V. E. Velculescu posted to copynumber genomics method by shikin on 2008-09-22 12:29:00 as
	Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms [My Copy] Xenobiotica, Vol. 36, No. 10-11. (8220), pp. 877-901. by Ekins, S., Bugrim, et al. A., Brovold, L., Kirillov, E., Nikolsky, Y., Rakhmatulin, E., Sorokina, S., Ryabov, A., Serebryiskaya, T., Melnikov, A., Metz, J., Nikolskaya, T. posted to genego method network systems_biology toxicology by shikin on 2008-05-04 13:08:06 as along with 1 group GeneGo
	Direct multiplexed measurement of gene expression with color-coded probe pairs. [My Copy] Nature biotechnology, Vol. 26, No. 3. (17 March 2008), pp. 317-325. by Gary K. Geiss, Roger E. Bumgarner, Brian Birditt, et al.Timothy Dahl, Naeem Dowidar, Dwayne L. Dunaway, H. Perry Fell, Sean Ferree, Renee D. George, Tammy Grogan, Jeffrey J. James, Malini Maysuria, Jeffrey D. Mitton, Paola Oliveri, Jennifer L. Osborn, Tao Peng, Amber L. Ratcliffe, Philippa J. Webster, Eric H. Davidson, Leroy Hood, Krassen Dimitrov posted to gene_expression genomics method by shikin on 2008-02-20 12:31:41 as along with 9 people and 2 groups pmalkus manduca robert guhjy austin vplagnol GeeSharpMinor psique jfr GeneGo parkinson's disease references

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's method [21 articles] Export

shikin's tags