shikin's normalization [15 articles] Export

Recent papers added to shikin's library classified by the tag normalization. You can also see everyone's normalization.

	Illumina WG-6 BeadChip strips should be normalized separately [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 372. by Wei Shi, Ashish Banerjee, Matthew Ritchie, Steve Gerondakis, Gordon Smyth posted to normalization illumina by shikin on 2009-11-11 14:19:29 as along with 2 people heliopais ptrobajo
	Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (02 October 2008), 409. by Johan Staaf, Johan Vallon-Christersson, David Lindgren, et al.Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Ake Borg, Markus Ringnér posted to snp normalization illumina by shikin on 2009-10-28 17:58:16 as along with 1 person vplagnol
	Model-based variance-stabilizing transformation for Illumina microarray data. [My Copy] Nucleic acids research, Vol. 36, No. 2. (4 February 2008), gkm1075. by Simon M. Lin, Pan Du, Wolfgang Huber, Warren A. Kibbe posted to normalization illumina by shikin on 2009-10-02 11:15:26 as along with 5 people ptrobajo heliopais jfr neveaire guhjy
	lumi: a pipeline for processing Illumina microarray. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1547-1548. by Pan Du, Warren A. Kibbe, Simon M. Lin posted to r qc normalization illumina by shikin on 2009-10-02 09:48:59 as along with 6 people daforerog ptrobajo heliopais jfr guhjy Stew
	Pre-processing of microarray data and analysis of differential expression. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 89-110. by Steffen Durinck posted to method microarray normalization r by shikin on 2009-06-02 19:07:38 as along with 3 people poirel jmcdonou klo
	Merging two gene-expression studies via cross-platform normalization [My Copy] Bioinformatics, Vol. 24, No. 9. (1 May 2008), pp. 1154-1160. by Andrey A. Shabalin, Hakon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel posted to meta-analysis microarray normalization by shikin on 2009-06-02 12:21:59 as along with 5 people and 1 group zufar jfr askrajiv aviad_work guhjy Bioinformatics
	A new summarization method for affymetrix probe level data [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949. by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer posted to affy method normalization statistics by shikin on 2009-05-06 19:29:29 as along with 3 people bertelsen cassj ghattem
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to affy microarray normalization statistics by shikin on 2009-03-31 16:40:12 as along with 22 people jperkins vplagnol brianb neils ipark-kaist michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Summaries of Affymetrix GeneChip probe level data [My Copy] Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted to affy gene_expression microarray normalization statistics by shikin on 2009-03-31 16:39:31 as along with 17 people jperkins daforerog lwaldron dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz bertelsen srp33
	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted to affy normalization statistics by shikin on 2009-03-31 16:38:56 as along with 27 people and 4 groups jperkins VGreiff lwaldron jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj vertikalist MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell Jones, Roderick Jensen, et al.Stephen Harris, Roger Perkins, Federico Goodsaid, Lei Guo, Lisa Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin Barbacioru, Vincent Bertholet, Xiaoxi Cao, Tzu M. Chu, Patrick Collins, Xiao H. Fan, Felix Frueh, James Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest Kawasaki, Quan Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron Peterson, Raj Puri, Richard Shippy, Zhenqiang Su, Yongming Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Wang, Janet Warrington, James Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell Wolfinger, Weida Tong posted to functional_analysis gene_expression microarray normalization systems_biology by shikin on 2009-02-24 13:49:14 as along with 18 people and 1 group maximilianh GustavoG mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee rdiaz jfr ugengma dswan guhjy GeeSharpMinor ptrobajo Jonesy Bioinformatics
	Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes. [My Copy] BMC genomics, Vol. 10 (05 February 2009), 63. by Steven P. Wilder, Pamela J. Kaisaki, Karène Argoud, et al.Anita Salhan, Jiannis Ragoussis, Marie-Thérèse T. Bihoreau, Dominique Gauguier posted to annotation gene_expression microarray normalization statistics by shikin on 2009-02-05 15:31:38 as along with 2 people and 1 group guhjy dswan Bioinformatics
	Probe set algorithms: is there a rational best bet? [My Copy] BMC bioinformatics, Vol. 7 (30 August 2006), 395. by Jinwook Seo, Eric P. Hoffman posted to affy microarray normalization by shikin on 2008-05-06 17:59:11 as along with 7 people ericrpaquet lwaldron heliopais jfr ghattem rschulz bertelsen
	Evaluating different methods of microarray data normalization [My Copy] BMC Bioinformatics, Vol. 7 (23 October 2006), 469. by Andre Fujita, Joao R. Sato, Leonardo O. Rodrigues, Carlos E. Ferreira, Mari C. Sogayar posted to microarray normalization by shikin on 2008-05-06 17:16:00 as along with 3 people daforerog jfr GeeSharpMinor
	Normalization of Microarray Data: Single-labeled and Dual-labeled Arrays. [My Copy] Mol Cells, Vol. 22, No. 3. (31 December 2006), pp. 254-261. by J. H. Do, D. K. Choi posted to genomics normalization by shikin on 2007-12-13 16:33:22 as along with 3 people bertelsen jfr GeeSharpMinor

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gene_expression	100
systems_biology	93
microarray	81
genomics	78
statistics	73
meta-analysis	52
cancer	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
r	23
database	23
snp	22
crohn	22
method	21
gwas	18
affy	17
enrichment	17
gene_association	16
breast	16
toxicology	16
normalization	15
stem_cells	15
illumina	13
integration	12
diabetes	12
nephrotoxicity	11
gsea	10
rage	10
software	9
bayesian	9
qc	9
temp	9
immunology	8
nature_sysbio_08	8
annotation	8
methylation	8
connexin	8
ideker	7
evolution	7
sequencing	6
ppi	6
workflow	6
mirna	6
solexa	6
clustering	5
kinetics_modeling	5
synergy	4
metabolomics	4
pathway	4
permutation_test	4
coexpression	4
rt-pcr	3
pancreas	3
rank-aggregation	3
functional_analysis	3
classification	3
sage	3
roc	3
gene_set	3
hood	3
signature	2
interactome	2
barabasi	2
ap1	2
mged	2
differential_expression	2
history	2
iconix	2
prostate	1
onthology	1
background_correction	1
transfac	1
genome_browser	1
linguistics	1
comparison	1
bg_correction	1
batch-correction	1
misc	1
sample-size	1
maqc	1
copynumber	1
hmm	1
hgp	1
development	1
ge	1

shikin's normalization [15 articles] Export

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