shikin's proteomics [28 articles] Export

Recent papers added to shikin's library classified by the tag proteomics. You can also see everyone's proteomics.

	Recent developments in public proteomic MS repositories and pipelines. [My Copy] Proteomics, Vol. 9, No. 4. (February 2009), pp. 861-881. by Jennifer A. Mead, Luca Bianco, Conrad Bessant posted to proteomics method database by shikin on 2009-09-24 16:34:43 as along with 2 people guhjy fishtank
	Database on Demand - an online tool for the custom generation of FASTA-formatted sequence databases. [My Copy] Proteomics, Vol. 9, No. 18. (September 2009), pp. 4421-4424. by Florian Reisinger, Lennart Martens posted to proteomics database by shikin on 2009-09-24 16:16:19 as
	Human Protein Reference Database--2009 update. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (6 January 2009), gkn892. by T. S. Keshava Prasad, Renu Goel, Kumaran Kandasamy, et al.Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S. Somanathan, Aimy Sebastian, Sandhya Rani, Somak Ray, C. J. Harrys Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K. Kashyap, Riaz Mohmood, Y. L. Ramachandra, V. Krishna, B. Abdul Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran, Raghothama Chaerkady, Akhilesh Pandey posted to proteomics database by shikin on 2009-09-24 15:17:26 as along with 7 people marti swp09 ipark-kaist diamantis sjcockell mpitman renatomilani
	Protein Identification by Tandem Mass Spectrometry and Sequence Database Searching [My Copy] Mass Spectrometry Data Analysis in Proteomics, Vol. 367 (2007), pp. 87-119. by Alexey I. Nesvizhskii posted to proteomics method by shikin on 2009-09-24 14:20:34 as along with 2 people nedwards fishtank
	False Discovery Rates and Related Statistical Concepts in Mass Spectrometry-Based Proteomics [My Copy] Journal of Proteome Research, Vol. 7, No. 1. (1 January 2008), pp. 47-50. by Hyungwon Choi, Alexey I. Nesvizhskii posted to statistics proteomics by shikin on 2009-09-24 14:14:09 as along with 4 people brianb nedwards guhjy robert
	Improved results in proteomics by use of local and peptide-class specific false discovery rates. [My Copy] BMC bioinformatics, Vol. 10 (12 June 2009), 179. by Lau Sennels, Jimi-Carlo C. Bukowski-Wills, Juri Rappsilber posted to statistics proteomics by shikin on 2009-09-24 14:13:39 as along with 1 person TRHvidsten
	Quantitative proteomics and phosphoproteomics reveal novel insights into complexity and dynamics of the EGFR signaling network. [My Copy] Proteomics, Vol. 8, No. 21. (7 November 2008), pp. 4383-4401. by Sandra Morandell, Taras Stasyk, Sergej Skvortsov, Stefan Ascher, Lukas A. Huber posted to proteomics by shikin on 2009-09-15 11:15:26 as along with 1 person guhjy
	Advances in the analysis of protein phosphorylation. [My Copy] Journal of proteome research, Vol. 7, No. 5. (8 May 2008), pp. 1809-1818. by Alberto Paradela, Juan Pablo P. Albar posted to proteomics by shikin on 2009-09-15 11:10:29 as along with 4 people carlosjavierna coela neils guhjy
	Integrating gene and protein expression data: pattern analysis and profile mining. [My Copy] Methods (San Diego, Calif.), Vol. 35, No. 3. (March 2005), pp. 303-314. by B. Cox, T. Kislinger, A. Emili posted to gene_expression meta-analysis proteomics by shikin on 2009-07-15 15:24:36 as along with 4 people and 1 group guhjy agileproteomics pgan fgibson GelML
	Systematic proteome and transcriptome analysis of stem cell populations. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 5, No. 15. (August 2006), pp. 1587-1591. by R. D. Unwin, A. D. Whetton posted to genomics meta-analysis proteomics by shikin on 2009-07-15 12:20:39 as
	Increased plasma concentrations of cytoskeletal and Ca2+-binding proteins and their peptides in psoriasis patients. [My Copy] Clinical chemistry, Vol. 54, No. 11. (November 2008), pp. 1805-1814. by Tatiana Plavina, Marina Hincapie, Eric Wakshull, Meena Subramanyam, William S. Hancock posted to proteomics psoriasis by shikin on 2009-07-10 18:05:07 as
	Functional genome and proteome analyses of cutaneous autoimmune diseases. [My Copy] Current pharmaceutical design, Vol. 12, No. 29. (2006), pp. 3787-3798. by J. Trcka, M. Kunz posted to proteomics psoriasis by shikin on 2009-07-10 18:04:38 as
	Quantitative proteomics analysis demonstrates post-transcriptional regulation of embryonic stem cell differentiation to hematopoiesis. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 3. (March 2008), pp. 459-472. by A. J. Williamson, D. L. Smith, D. Blinco, et al.R. D. Unwin, S. Pearson, C. Wilson, C. Miller, L. Lancashire, G. Lacaud, V. Kouskoff, A. D. Whetton posted to gene_expression meta-analysis proteomics stem_cells by shikin on 2009-07-06 19:22:06 as
	Expression profiles in surgically-induced carotid stenosis: a combined transcriptomic and proteomic investigation. [My Copy] Journal of cellular and molecular medicine, Vol. 12, No. 5B. (October 2008), pp. 1956-1973. by A. Forte, M. Finicelli, P. De Luca, et al.C. Quarto, F. Onorati, P. Santè, A. Renzulli, U. Galderisi, L. Berrino, M. De Feo, F. Rossi, M. Cotrufo, A. Cascino, M. Cipollaro posted to gene_expression meta-analysis proteomics by shikin on 2009-07-06 19:01:33 as
	Comparative proteome, transcriptome, and genome analysis of a gonadal and an extragonadal germ cell tumor cell line. [My Copy] Journal of proteome research, Vol. 7, No. 9. (September 2008), pp. 3890-3899. by S. Glaesener, F. Honecker, I. M. Veltman, et al.A. J. Gillis, T. Rohlfing, T. Streichert, B. Otto, T. H. Brummendorf, L. H. Looijenga, C. Bokemeyer, S. Balabanov posted to gene_expression meta-analysis proteomics by shikin on 2009-07-06 18:57:55 as
	Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies. [My Copy] BMC genomics, Vol. 10 (19 January 2009), 30. by H. Hornshøj, E. Bendixen, L. N. Conley, et al.P. K. Andersen, J. Hedegaard, F. Panitz, C. Bendixen posted to gene_expression meta-analysis proteomics by shikin on 2009-07-06 18:43:05 as along with 2 people and 1 group guhjy dswan Bioinformatics
	An approach to handling and interpretation of ambiguous data in transcriptome and proteome comparisons [My Copy] PROTEOMICS, Vol. 8, No. 6. (18 March 2008), pp. 1165-1169. by Martin Irmler, Daniela Hartl, Thorsten Schmidt, et al.Johannes Schuchhardt, Christiane Lach, Helmut E. Meyer, Martin H. de Angelis, Joachim Klose, Johannes Beckers posted to gene_expression meta-analysis proteomics by shikin on 2009-07-06 18:40:49 as along with 1 person guhjy
	Stage-specific alterations of the genome, transcriptome, and proteome during colorectal carcinogenesis. [My Copy] Genes, chromosomes & cancer, Vol. 46, No. 1. (16 January 2007), pp. 10-26. by J. K. Habermann, U. Paulsen, U. J. Roblick, et al.M. B. Upender, L. M. McShane, E. L. Korn, D. Wangsa, S. Krüger, M. Duchrow, H. P. Bruch, G. Auer, T. Ried posted to cancer gene_expression meta-analysis proteomics by shikin on 2009-07-06 17:58:41 as along with 2 people jfr rdiaz
	Quantitative proteomic and genomic profiling reveals metastasis-related protein expression patterns in gastric cancer cells. [My Copy] Journal of proteome research, Vol. 5, No. 10. (October 2006), pp. 2727-2742. by Y. R. Chen, H. F. Juan, H. C. Huang, et al.H. H. Huang, Y. J. Lee, M. Y. Liao, C. W. Tseng, L. L. Lin, J. Y. Chen, M. J. Wang, J. H. Chen, Y. J. Chen posted to cancer gene_expression meta-analysis proteomics by shikin on 2009-07-06 17:45:18 as
	Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance. [My Copy] Cancer research, Vol. 68, No. 13. (1 July 2008), pp. 5132-5142. by C. M. Shachaf, A. J. Gentles, S. Elchuri, et al.D. Sahoo, Y. Soen, O. Sharpe, O. D. Perez, M. Chang, D. Mitchel, W. H. Robinson, D. Dill, G. P. Nolan, S. K. Plevritis, D. W. Felsher posted to cancer gene_expression meta-analysis proteomics by shikin on 2009-07-06 17:29:38 as
	New data analysis and mining approaches identify unique proteome and transcriptome markers of susceptibility to autoimmune diabetes. [My Copy] Molecular & cellular proteomics : MCP, Vol. 5, No. 2. (February 2006), pp. 293-305. by I. C. Gerling, S. Singh, N. I. Lenchik, D. R. Marshall, J. Wu posted to gene_expression meta-analysis pathway-analysis proteomics by shikin on 2009-07-06 16:55:40 as
	Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 24. (14 June 2005), pp. 8621-8626. by T. Mijalski, A. Harder, T. Halder, et al.M. Kersten, M. Horsch, T. M. Strom, H. V. Liebscher, F. Lottspeich, M. H. de Angelis, J. Beckers posted to gene_expression meta-analysis proteomics by shikin on 2009-07-06 16:50:28 as along with 2 people kengg JeffR100
	Integrated transcriptome and proteome data: the challenges ahead. [My Copy] Briefings in functional genomics & proteomics, Vol. 3, No. 3. (November 2004), pp. 212-219. by C. J. Hack posted to gene_expression meta-analysis proteomics by shikin on 2009-06-29 15:47:24 as
	Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics. [My Copy] The Journal of biological chemistry, Vol. 276, No. 21. (25 May 2001), pp. 17920-17931. by F. Le Naour, L. Hohenkirk, A. Grolleau, et al.D. E. Misek, P. Lescure, J. D. Geiger, S. Hanash, L. Beretta posted to gene_expression meta-analysis proteomics by shikin on 2009-06-29 14:53:52 as
	Proteomic and transcriptomic analyses of macrophages with an increased resistance to oxidized low density lipoprotein (oxLDL)-induced cytotoxicity generated by chronic exposure to oxLDL. [My Copy] Molecular & cellular proteomics : MCP, Vol. 4, No. 10. (October 2005), pp. 1522-1540. by J. P. Conway, M. Kinter posted to gene_expression meta-analysis proteomics by shikin on 2009-06-29 14:43:55 as
	Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 21. (24 May 2005), pp. 7653-7658. by Pei-Zheng Z. Zheng, Kan-Kan K. Wang, Qun-Ye Y. Zhang, et al.Qiu-Hua H. Huang, Yan-Zhi Z. Du, Qing-Hua H. Zhang, Da-Kai K. Xiao, Shu-Hong H. Shen, Sandrine Imbeaud, Eric Eveno, Chun-Jun J. Zhao, Yu-Long L. Chen, Hui-Yong Y. Fan, Samuel Waxman, Charles Auffray, Gang Jin, Sai-Juan J. Chen, Zhu Chen, Ji Zhang posted to cancer gene_expression meta-analysis proteomics by shikin on 2009-06-29 13:27:50 as along with 1 person textoris
	Identification of Novel Functional Differences in Monocyte Subsets Using Proteomic and Transcriptomic Methods. [My Copy] Journal of proteome research (22 June 2009) by Changqing Zhao, Huoming Zhang, Wing-Cheong C. Wong, et al.Xiaohui Sem, Hao Han, Siew-Min M. Ong, Yann-Chong C. Tan, Wei-Hseun H. Yeap, Chee-Sian S. Gan, Kok-Quan Q. Ng, Mickey Boon-Chai B. Koh, Philippe Kourilsky, Siu-Kwan K. Sze, Siew-Cheng C. Wong posted to gene_expression meta-analysis proteomics by shikin on 2009-06-29 12:55:54 as
	Estimating accuracy of RNA-Seq and microarrays with proteomics. [My Copy] BMC genomics, Vol. 10, No. 1. (16 April 2009), 161. by Xing Fu, Ning Fu, Song Guo, et al.Zheng Yan, Ying Xu, Hao Hu, Corinna Menzel, Wei Chen, Yixue Li, Rong Zeng, Philipp Khaitovich posted to method microarray proteomics sequencing solexa by shikin on 2009-04-17 12:36:39 as along with 7 people and 1 group hzoltan sjcockell GustavoLacerda guhjy burak dswan stajich Mycology

Note: You may cite this page as: http://www.citeulike.org/user/shikin/tag/proteomics

gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's proteomics [28 articles] Export

shikin's tags