shikin's r [23 articles] Export

Recent papers added to shikin's library classified by the tag r. You can also see everyone's r.

	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to snp r cnv affy by shikin on 2009-10-27 17:36:28 as along with 5 people djkt pkonings rdiaz daforerog neils
	Moderated effect size and P-value combinations for microarray meta-analyses [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2692-2699. by Guillemette Marot, Jean-Louis Foulley, Claus-Dieter Mayer, Florence Jaffrezic posted to r meta-analysis integration gene_expression by shikin on 2009-10-26 18:01:13 as along with 6 people zufar dswan renatomilani rdiaz nuin daforerog
	SNPchip: R classes and methods for SNP array data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 5. (1 March 2007), pp. 627-628. by Robert B. Scharpf, Jason C. Ting, Jonathan Pevsner, Ingo Ruczinski posted to snp r by shikin on 2009-10-26 16:11:41 as along with 6 people daforerog guhjy jfr Ayest eckart_bindewald cpnP
	metahdep: meta-analysis of hierarchically dependent gene expression studies [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2619-2620. by John R. Stevens, Gabriel Nicholas posted to r microarray meta-analysis integration by shikin on 2009-10-02 19:32:16 as along with 3 people dswan daforerog guhjy
	lumi: a pipeline for processing Illumina microarray. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1547-1548. by Pan Du, Warren A. Kibbe, Simon M. Lin posted to r qc normalization illumina by shikin on 2009-10-02 09:48:59 as along with 6 people daforerog ptrobajo heliopais jfr guhjy Stew
	arrayMagic: two-colour cDNA microarray quality control and preprocessing. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 4. (15 February 2005), pp. 554-556. by Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka posted to r qc microarray by shikin on 2009-09-28 15:34:01 as
	CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by Johannes Rainer, Fatima Sanchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski posted to r microarray gene_expression by shikin on 2009-09-28 15:29:19 as along with 5 people daforerog guhjy rschulz jfr rdiaz
	arrayQCplot: software for checking the quality of microarray data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 18. (15 September 2006), pp. 2305-2307. by Eun-Kyung K. Lee, Sung-Gon G. Yi, Taesung Park posted to r qc microarray by shikin on 2009-09-28 15:23:23 as along with 2 people daforerog jfr
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted to snp r illumina by shikin on 2009-09-28 11:50:54 as along with 7 people carolep jsatkosk daforerog djkt dswan rdiaz torfinnnome
	BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 9. (1 May 2006), pp. 1144-1146. by J. C. Marioni, N. P. Thorne, S. Tavaré posted to r hmm cnv by shikin on 2009-09-07 10:35:23 as along with 2 people talponer ellakat
	Spatial smoothing and hot spot detection for CGH data using the fused lasso. [My Copy] Biostatistics (Oxford, England), Vol. 9, No. 1. (January 2008), pp. 18-29. by Robert Tibshirani, Pei Wang posted to r cnv by shikin on 2009-09-03 17:13:29 as along with 2 people rdiaz debasis
	A method for calling gains and losses in array CGH data. [My Copy] Biostatistics (Oxford, England), Vol. 6, No. 1. (January 2005), pp. 45-58. by Pei Wang, Young Kim, Jonathan Pollack, Balasubramanian Narasimhan, Robert Tibshirani posted to r cnv by shikin on 2009-09-03 16:14:17 as along with 1 person noushin
	Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 18. (12 December 2004), pp. 3413-3422. by Philippe Hupé, Nicolas Stransky, Jean-Paul P. Thiery, François Radvanyi, Emmanuel Barillot posted to r cnv by shikin on 2009-09-03 15:04:21 as along with 3 people askrajiv jfr OscarRueda
	Analysis of Array-CGH Data Using the R and Bioconductor Software Suite. [My Copy] Comparative and functional genomics (2009) by Winfried A. Hofmann, Anja Weigmann, Marcel Tauscher, et al.Britta Skawran, Tim Focken, Reena Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann posted to r cnv by shikin on 2009-09-03 14:10:41 as along with 3 people and 1 group giovenko rdiaz jandot Journal picks
	Importing ArrayExpress datasets into R/Bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2092-2094. by Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, et al.Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber posted to r microarray database by shikin on 2009-09-01 10:24:29 as along with 12 people and 2 groups tonamswish daforerog jperkins ealloza pkonings lwaldron dswan guhjy chrisamiller nuin neils phoenixzxl Orengo Group Journal Picks Bioinformatics
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to genomics r by shikin on 2009-07-03 18:01:25 as along with 16 people and 3 groups daveGerrard iris42 guhjy aprasad dswan cisevol inesdesantiago daforerog ppgardne natstreet nuin brianb kshameer neils chrisamiller druvus Bioinformatics BergmanLab Journal picks
	Pre-processing of microarray data and analysis of differential expression. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 89-110. by Steffen Durinck posted to method microarray normalization r by shikin on 2009-06-02 19:07:38 as along with 3 people poirel jmcdonou klo
	arrayQualityMetrics--a bioconductor package for quality assessment of microarray data [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 415-416. by Audrey Kauffmann, Robert Gentleman, Wolfgang Huber posted to r qc microarray by shikin on 2009-05-25 17:56:18 as along with 16 people and 1 group jperkins VGreiff Zephyrus daforerog lwaldron jfr ptrobajo rdiaz siebert bertelsen pkonings dswan renatomilani rschulz nuin guhjy Bioinformatics
	RankAggreg, an R package for weighted rank aggregation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 62. by Vasyl Pihur, Susmita Datta, Somnath Datta posted to enrichment meta-analysis r rank-aggregation by shikin on 2009-02-24 13:25:49 as along with 8 people and 2 groups jfr slv23 daforerog rdiaz trfield provero guhjy mdharsee microRNA Bioinformatics - CRUK
	Bioconductor: open software development for computational biology and bioinformatics. [My Copy] Genome biology, Vol. 5, No. 10. (2004), R80. by Robert C. Gentleman, Vincent J. Carey, Douglas M. Bates, et al.Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin Maechler, Anthony J. Rossini, Gunther Sawitzki, Colin Smith, Gordon Smyth, Luke Tierney, Jean Y. Yang, Jianhua Zhang posted to gene_expression genomics r software temp by shikin on 2009-02-17 16:57:56 as along with 25 people and 1 group schwalb mqbphcw3 isimpson anf sebastien_vigneau najwvandijk coela YukaH daforerog czeller gupton Dax42 pcahan1 balajis dullhunk giovanni incovoma talponer medha1 wirawan joule zhouyu bertelsen sanchezbuelna bakakaj GeschwindLab
	EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 493. by G. Barton, J. Abbott, N. Chiba, et al.D. W. Huang, Y. Huang, M. Krznaric, J. Mack Smith, A. Saleem, B. T. Sherman, B. Tiwari, C. Tomlinson, T. Aitman, J. Darlington, L. Game, M. J. E. Sternberg, S. A. Butcher posted to gene_expression genomics microarray r by shikin on 2008-12-05 17:18:03 as along with 11 people gpyle pengchy jfr dullhunk rdiaz guhjy nuin Terkko lptolik GeeSharpMinor dansullivanblk
	GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. [My Copy] Bioinformatics (12 May 2007) by Sean Davis, Paul S S. Meltzer posted to database r by shikin on 2008-12-02 16:16:43 as along with 10 people and 1 group brianb dswan neils guhjy jfr ugengma giovenko ablejec zhouyu bertelsen Bioinformatics
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert Jansen, Remo Suppi posted to r by shikin on 2008-10-02 10:58:33 as along with 26 people and 1 group Zephyrus daveGerrard sotacam cassj walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy robertlischke chrisamiller cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot BergmanLab

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's r [23 articles] Export

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