shikin's snp [21 articles] Export

Recent papers added to shikin's library classified by the tag snp. You can also see everyone's snp.

	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W340-344. by Ignacio Medina, David Montaner, Nuria Bonifaci, et al.Miguel Angel A. Pujana, José Carbonell, Joaquin Tarraga, Fatima Al-Shahrour, Joaquin Dopazo posted to snp pathway-analysis gwas gsea by shikin on 2009-11-24 20:49:01 as along with 6 people zufar daed ptrobajo daforerog kimorley guhjy
	Genetic control of human brain transcript expression in Alzheimer disease. [My Copy] American journal of human genetics, Vol. 84, No. 4. (April 2009), pp. 445-458. by Jennifer A. Webster, J. Raphael Gibbs, Jennifer Clarke, et al.Monika Ray, Weixiong Zhang, Peter Holmans, Kristen Rohrer, Alice Zhao, Lauren Marlowe, Mona Kaleem, Donald S. McCorquodale, Cindy Cuello, Doris Leung, Leslie Bryden, Priti Nath, Victoria L. Zismann, Keta Joshipura, Matthew J. Huentelman, Diane Hu-Lince, Keith D. Coon, David W. Craig, John V. Pearson, NACC-Neuropathology Group, Christopher B. Heward, Eric M. Reiman, Dietrich Stephan, John Hardy, Amanda J. Myers posted to snp gene_expression gene_association by shikin on 2009-11-24 20:44:52 as along with 2 people jeremymiller daforerog
	High-resolution mapping of expression-QTLs yields insight into human gene regulation. [My Copy] PLoS genetics, Vol. 4, No. 10. (10 October 2008), e1000214. by Jean-Baptiste B. Veyrieras, Sridhar Kudaravalli, Su Yeon Y. Kim, et al.Emmanouil T. Dermitzakis, Yoav Gilad, Matthew Stephens, Jonathan K. Pritchard posted to snp gwas gene_expression gene_association by shikin on 2009-11-24 20:35:28 as along with 9 people sameersoi athma guhjy bertrandservin xingxu lp2 larbiza caseybrown djkt
	Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R128. by Tatiana Popova, Elodie Manie, Dominique S. Lyonnet, Guillem Rigaill, Emmanuel Barillot, Marc H. Stern posted to snp microarray cnv by shikin on 2009-11-19 18:00:46 as
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to snp cnv affy by shikin on 2009-11-13 17:42:47 as along with 20 people and 1 group vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1253-1260. by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, et al.Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J. Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler posted to snp method cnv affy by shikin on 2009-11-12 18:02:50 as along with 14 people sameersoi fenghezi psique buyske maren guhjy pdexheimer pengchy caseybrown dakelley djkt daed rdiaz vplagnol
	Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711. by Rebeqa Gunnarsson, Johan Staaf, Mattias Jansson, et al.Anne Marie M. Ottesen, Hanna Göransson, Ulrika Liljedahl, Ulrik Ralfkiaer, Mahmoud Mansouri, Anne Mette M. Buhl, Karin Ekström E. Smedby, Henrik Hjalgrim, Ann-Christine C. Syvänen, Ake Borg, Anders Isaksson, Jesper Jurlander, Gunnar Juliusson, Richard Rosenquist posted to snp illumina cnv affy by shikin on 2009-10-29 18:51:56 as along with 1 person jfr
	Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (02 October 2008), 409. by Johan Staaf, Johan Vallon-Christersson, David Lindgren, et al.Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Ake Borg, Markus Ringnér posted to snp normalization illumina by shikin on 2009-10-28 17:58:16 as along with 1 person vplagnol
	High-throughput SNP genotyping on universal bead arrays. [My Copy] Mutation research, Vol. 573, No. 1-2. (3 June 2005), pp. 70-82. by Richard Shen, Jian-Bing B. Fan, Derek Campbell, et al.Weihua Chang, Jing Chen, Dennis Doucet, Jo Yeakley, Marina Bibikova, Eliza Wickham Garcia, Celeste McBride, Frank Steemers, Francisco Garcia, Bahram G. Kermani, Kevin Gunderson, Arnold Oliphant posted to snp microarray illumina by shikin on 2009-10-28 16:31:07 as along with 1 person stsaft
	High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays. [My Copy] Genome research, Vol. 17, No. 3. (31 March 2007), pp. 368-376. by Jan Oosting, Esther H. Lips, Ronald van Eijk, et al.Paul H. Eilers, Károly Szuhai, Cisca Wijmenga, Hans Morreau, Tom van Wezel posted to snp illumina by shikin on 2009-10-28 14:30:41 as along with 2 people jfr shigepong
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to snp r cnv affy by shikin on 2009-10-27 17:36:28 as along with 5 people djkt pkonings rdiaz daforerog neils
	High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping. [My Copy] Genome research, Vol. 16, No. 9. (September 2006), pp. 1136-1148. by Daniel A. Peiffer, Jennie M. Le, Frank J. Steemers, et al.Weihua Chang, Tony Jenniges, Francisco Garcia, Kirt Haden, Jiangzhen Li, Chad A. Shaw, John Belmont, Sau Wai W. Cheung, Richard M. Shen, David L. Barker, Kevin L. Gunderson posted to snp microarray illumina cnv by shikin on 2009-10-27 17:24:03 as along with 3 people baizhang jfr jackjackjjj
	Systematic assessment of copy number variant detection via genome-wide SNP genotyping. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1199-1203. by Gregory M. Cooper, Troy Zerr, Jeffrey M. Kidd, Evan E. Eichler, Deborah A. Nickerson posted to snp microarray cnv by shikin on 2009-10-27 17:23:18 as along with 12 people and 1 group sameersoi daforerog psique maren pengchy vplagnol waszak caseybrown Zephyrus misonneh rdiaz guhjy Roswell Cancer Crosstalk
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to snp microarray cnv by shikin on 2009-10-27 16:51:13 as along with 10 people and 4 groups rdiaz waszak jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	The SNP ratio test: pathway analysis of genome-wide association datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2762-2763. by Colm O'Dushlaine, Elaine Kenny, Elizabeth A. Heron, et al.Ricardo Segurado, Michael Gill, Derek W. Morris, Aiden Corvin posted to snp pathway-analysis by shikin on 2009-10-26 18:15:20 as along with 8 people zufar liqbbi daforerog rdiaz natstreet pkonings guhjy druvus
	A genotype calling algorithm for affymetrix SNP arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 1. (1 January 2006), pp. 7-12. by Nusrat Rabbee, Terence P. Speed posted to statistics snp affy by shikin on 2009-10-26 16:13:35 as along with 6 people daforerog pcahan1 jfr beniltoncarvalho ashandanj djkt
	SNPchip: R classes and methods for SNP array data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 5. (1 March 2007), pp. 627-628. by Robert B. Scharpf, Jason C. Ting, Jonathan Pevsner, Ingo Ruczinski posted to snp r by shikin on 2009-10-26 16:11:41 as along with 6 people daforerog guhjy jfr Ayest eckart_bindewald cpnP
	Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. [My Copy] Genome biology, Vol. 9, No. 4. (3 April 2008), R63. by Shin Lin, Benilton Carvalho, David J. Cutler, Dan E. Arking, Aravinda Chakravarti, Rafael A. Irizarry posted to snp bayesian by shikin on 2009-10-26 11:54:02 as along with 5 people rdiaz daforerog maren natstreet jfr
	Segmentation and Estimation for SNP Microarrays: A Bayesian Multiple Change-Point Approach. [My Copy] Biometrics (17 September 2009) by Yu Chuan C. Tai, Mark N. Kvale, John S. Witte posted to snp method cnv bayesian by shikin on 2009-09-28 14:24:46 as along with 1 person rdiaz
	Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (22 April 2007), pp. 485-499. by Benilton Carvalho, Henrik Bengtsson, Terence P. Speed, Rafael A. Irizarry posted to snp illumina affy by shikin on 2009-09-28 13:25:51 as along with 4 people daforerog GeeSharpMinor guhjy jfr
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted to snp r illumina by shikin on 2009-09-28 11:50:54 as along with 7 people carolep jsatkosk daforerog djkt dswan rdiaz torfinnnome

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gene_expression	97
systems_biology	93
microarray	79
genomics	78
statistics	74
cancer	52
meta-analysis	52
thesis	45
pathway-analysis	38
network	37
psoriasis	33
genego	29
proteomics	28
cnv	26
database	23
r	23
crohn	22
method	21
snp	21
affy	18
gwas	18
enrichment	17
breast	16
gene_association	16
toxicology	16
normalization	15
diabetes	12
illumina	12
integration	12
nephrotoxicity	11
gsea	10
rage	10
bayesian	9
qc	9
software	9
stem_cells	9
temp	9
annotation	8
immunology	8
methylation	8
nature_sysbio_08	8
evolution	7
ideker	7
mirna	6
ppi	6
sequencing	6
solexa	6
workflow	6
clustering	5
kinetics_modeling	5
metabolomics	4
pathway	4
permutation_test	4
synergy	4
classification	3
functional_analysis	3
gene_set	3
hood	3
pancreas	3
rank-aggregation	3
roc	3
rt-pcr	3
sage	3
ap1	2
barabasi	2
coexpression	2
differential_expression	2
history	2
iconix	2
interactome	2
mged	2
signature	2
background_correction	1
batch-correction	1
bg_correction	1
comparison	1
copynumber	1
development	1
genome_browser	1
hgp	1
hmm	1
linguistics	1
maqc	1
misc	1
onthology	1
prostate	1
sample-size	1
transfac	1

shikin's snp [21 articles] Export

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