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shikin's statistics [40 articles]

Recent papers added to shikin's library classified by the tag statistics. You can also see everyone's statistics.
  • Statistical tests for differential expression in cDNA microarray experiments
    Genome Biology, Vol. 4, No. 4. (2003)
    by Xiangqin Cui, Gary Churchill
    posted to statistics microarray gene_expression by shikin on 2008-06-04 18:29:30 as ** along with 2 people heliopais waszak
  • Computational analysis of microarray data.
    Nat Rev Genet, Vol. 2, No. 6. (June 2001), pp. 418-427.
    by J Quackenbush
    posted to statistics microarray gene_expression by shikin on 2008-05-04 14:33:40 as *** along with 5 people and 1 group frohike bryank chad_davis atombjut waghsk GeneGo
  • Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1665-1667.
    by Pan, Fei, Kamath, Kiran, Pulapura, Sudip, Achar, Avinash, Nunez-Iglesias, Juan, Huang, Yu, Yan, Xifeng, Han, Jiawei, Hu, Haiyan, Xu, Min, Hu, Jianjun, Zhou, Xianghong Jasmine
    posted to statistics gene_expression by shikin on 2008-04-22 18:45:50 as **
  • Coupled two-way clustering analysis of gene microarray data.
    Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12079-12084.
    by G Getz, E Levine, E Domany
    posted to clustering statistics by shikin on 2008-04-21 19:30:55 as ** along with 3 people and 1 group tvdbulck wnpx caporaso biomedical-nlp
  • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.
    Proc Natl Acad Sci U S A, Vol. 96, No. 12. (8 June 1999), pp. 6745-6750.
    by U Alon, N Barkai, DA Notterman, K Gish, S Ybarra, D Mack, AJ Levine
    posted to clustering statistics by shikin on 2008-04-21 17:12:57 as ** along with 5 people ggrot bedo sutovsky frohike jo_davies
  • Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes
    BMC Bioinformatics, Vol. 9 (10 January 2008), 12.
    by Guy N Brock, John R Shaffer, Richard E Blakesley, Meredith J Lotz, George C Tseng
    posted to gene_expression statistics by shikin on 2008-04-15 07:23:32 as ** along with 3 people jyuh jfr sotacam
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to enrichment genomics pathway-analysis statistics by shikin on 2007-12-14 13:01:24 as ** along with 20 people and 4 groups ellakat ihpark srp33 dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais waghsk roys Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.
    Nat Genet, Vol. 34, No. 3. (July 2003), pp. 267-273.
    by VK Mootha, CM Lindgren, KF Eriksson, A Subramanian, S Sihag, J Lehar, P Puigserver, E Carlsson, M Ridderstråle, E Laurila, N Houstis, MJ Daly, N Patterson, JP Mesirov, TR Golub, P Tamayo, B Spiegelman, ES Lander, JN Hirschhorn, D Altshuler, LC Groop
    posted to enrichment genomics pathway-analysis statistics by shikin on 2007-12-14 13:00:26 as *** along with 6 people and 2 groups heliopais magusina dragonrez maryee ealloza giovanni BioinfoCIPF GeschwindLab
  • Sample size for FDR-control in microarray data analysis.
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3097-3104.
    by SH Jung
    posted to genomics sample-size statistics by shikin on 2007-12-12 14:14:55 as **
  • False discovery rate paradigms for statistical analyses of microarray gene expression data.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 436-446.
    by C Cheng, S Pounds
    posted to genomics statistics by shikin on 2007-12-07 11:43:40 as read along with 2 people jyuh jfr
  • Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data.
    BMC Bioinformatics, Vol. 6 (2005)
    by N Jain, H Cho, M O'Connell, JK Lee
    posted to genomics statistics by shikin on 2007-12-06 15:14:53 as ** along with 1 person jdiggans
  • notes Normality of oligonucleotide microarray data and implications for parametric statistical analyses.
    Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2254-2262.
    by PJ Giles, D Kipling
    posted to genomics statistics by shikin on 2007-11-23 16:52:02 as **
  • notes Exercise affects the gene expression profiles of human white blood cells.
    J Appl Physiol (21 September 2006)
    by Petra Buettner, Sandy Mosig, Anja Lechtermann, Harald Funke, Frank C C Mooren
    posted to genomics statistics by shikin on 2007-11-23 12:47:55 as ** along with 1 person maldi
  • notes Gene selection with multiple ordering criteria
    BMC Bioinformatics, Vol. 8 (05 March 2007), 74.
    by James J Chen, Chen-An Tsai, Shengli Tzeng, Chun-Houh Chen
    posted to genomics statistics by shikin on 2007-11-23 12:26:28 as ** along with 3 people jfr shigepong ghattem
  • Bayesian Modeling of Differential Gene Expression
    Biometrics, Vol. 62, No. 1. (March 2006), pp. 10-18.
    by Lewin, Alex, Richardson, Sylvia, Marshall, Clare, Glazier, Anne, Aitman, Tim
    posted to bayesian genomics statistics by shikin on 2007-11-21 15:39:52 as ** along with 1 person jo_davies
  • Putative null distributions corresponding to tests of differential expression in the Golden Spike dataset are intensity dependent
    BMC Genomics, Vol. 8 (19 April 2007), 105.
    by Daniel P Gaile, Jeffrey C Miecznikowski
    posted to genomics statistics by shikin on 2007-11-21 14:34:19 as ** along with 1 person jfr
  • Estimation of false discovery proportion under general dependence.
    Bioinformatics, Vol. 22, No. 24. (15 December 2006), pp. 3025-3031.
    by Y Pawitan, S Calza, A Ploner
    posted to genomics statistics by shikin on 2007-11-12 19:43:26 as ** along with 1 person shigepong
  • Empirical Bayes screening of many p-values with applications to microarray studies.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1987-1994.
    by S Datta, S Datta
    posted to genomics statistics by shikin on 2007-11-12 19:42:48 as ** along with 1 person jyuh
  • notes A theoretical analysis of the selection of differentially expressed genes.
    J Bioinform Comput Biol, Vol. 3, No. 3. (June 2005), pp. 627-643.
    by S Mukherjee, SJ Roberts
    posted to genomics statistics by shikin on 2007-11-12 19:37:52 as **
  • notes An investigation of two multivariate permutation methods for controlling the false discovery proportion.
    Stat Med (14 March 2007)
    by Edward L L Korn, Ming-Chung C Li, Lisa M M McShane, Richard Simon
    posted to genomics permutation_test statistics by shikin on 2007-11-12 19:30:26 as ** along with 1 person jfr
  • notes Multiple-testing strategy for analyzing cDNA array data on gene expression.
    Biometrics, Vol. 60, No. 3. (September 2004), pp. 774-782.
    by RR Delongchamp, JF Bowyer, JJ Chen, RL Kodell
    posted to genomics roc statistics by shikin on 2007-11-12 17:44:43 as read
  • notes Removing intensity effects and identifying significant genes for Affymetrix arrays in macrophage migration inhibitory factor-suppressed neuroblastoma cells.
    Proc Natl Acad Sci U S A, Vol. 102, No. 49. (6 December 2005), pp. 17751-17756.
    by J Fan, Y Chen, HM Chan, PK Tam, Y Ren
    posted to genomics permutation_test statistics by shikin on 2007-11-12 17:06:14 as read
  • notes Multiple hypothesis testing in microarray experiments
    Statistical Science, Vol. 18, No. 1. (2003), pp. 71-103.
    by S Dudoit, Jp Schaffer, Jc Boldrick
    posted to genomics permutation_test statistics by shikin on 2007-11-12 16:02:32 as read
  • A mixture model for estimating the local false discovery rate in DNA microarray analysis.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2694-2701.
    by JG Liao, Y Lin, ZE Selvanayagam, WJ Shih
    posted to statistics by shikin on 2007-11-09 20:14:09 as **
  • Robust estimation of the false discovery rate
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 1979-1987.
    by Stan Pounds, Cheng Cheng
    posted to statistics by shikin on 2007-11-09 20:11:12 as ** along with 2 people chad_davis shigepong
  • Construction of null statistics in permutation-based multiple testing for multi-factorial microarray experiments
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1486-1494.
    by Xin Gao
    posted to statistics by shikin on 2007-11-09 20:10:48 as ** along with 1 person djkt
  • notes Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures
    BMC Bioinformatics, Vol. 8 (18 May 2007), 157.
    by Xin Lu, David L Perkins
    posted to statistics by shikin on 2007-11-09 20:08:22 as ** along with 2 people jyuh shigepong
  • Effect of various normalization methods on Applied Biosystems expression array system data
    BMC Bioinformatics, Vol. 7 (15 December 2006), 533.
    by Catalin C Barbacioru, Yulei Wang, Roger D Canales, Yongming A Sun, David N Keys, Frances Chan, Karen A Poulter, Raymond R Samaha
    posted to genomics statistics by shikin on 2007-11-09 20:08:05 as ** along with 1 person shigepong
  • notes Estimating p-values in small microarray experiments.
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 38-43.
    by H Yang, G Churchill
    posted to genomics permutation_test statistics by shikin on 2007-11-09 19:44:05 as ** along with 1 person jyuh
  • notes Ranking analysis of microarray data: a powerful method for identifying differentially expressed genes.
    Genomics, Vol. 88, No. 6. (December 2006), pp. 846-854.
    by YD Tan, M Fornage, YX Fu
    posted to genomics statistics by shikin on 2007-11-09 19:15:38 as ** along with 1 person jfr
  • notes Selection of differentially expressed genes in microarray data analysis
    The Pharmacogenomics Journal, Vol. aop, No. current.
    by JJ Chen, SJ Wang, CA Tsai, CJ Lin,
    posted to genomics roc statistics by shikin on 2007-11-08 16:54:00 as read along with 2 people jyuh bioyang
  • notes Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
    BMC Bioinformatics, Vol. 7 (26 July 2006), 359.
    by Ian B Jeffery, Desmond G Higgins, Aedin C Culhane
    posted to genomics roc statistics by shikin on 2007-11-08 16:39:10 as *** along with 3 people jfr mayercd bakakaj
  • notes Identifying differentially expressed genes using false discovery rate controlling procedures.
    Bioinformatics, Vol. 19, No. 3. (12 February 2003), pp. 368-375.
    by A Reiner, D Yekutieli, Y Benjamini
    posted to genomics statistics by shikin on 2007-11-08 16:30:25 as ** along with 3 people RMGraze maryee talponer
  • notes Significance analysis of microarrays applied to the ionizing radiation response.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121.
    by VG Tusher, R Tibshirani, G Chu
    posted to genomics statistics by shikin on 2007-11-08 13:06:32 as ** along with 8 people askrajiv miguel jen_drake gpalidwor olympos ccr incovoma ugengma
  • notes Identifying differentially expressed genes in meta-analysis via Bayesian model-based clustering.
    Biom J, Vol. 48, No. 3. (June 2006), pp. 435-450.
    by YY Jung, MS Oh, DW Shin, SH Kang, HS Oh
    posted to genomics statistics by shikin on 2007-11-07 18:14:30 as **
  • notes Comparison of methods for estimating the number of true null hypotheses in multiplicity testing.
    J Biopharm Stat, Vol. 13, No. 4. (November 2003), pp. 675-689.
    by HM Hsueh, JJ Chen, RL Kodell
    posted to genomics statistics by shikin on 2007-11-07 18:06:13 as read
  • notes Estimation and control of multiple testing error rates for microarray studies.
    Brief Bioinform, Vol. 7, No. 1. (March 2006), pp. 25-36.
    by SB Pounds
    posted to genomics statistics by shikin on 2007-11-07 18:04:27 as **
  • notes Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    Journal of the Royal Statistical Society. Series B, Methodological, Vol. 57, No. 1. (1995), pp. 289-300.
    by Y Benjamini, Y Hochberg
    posted to statistics by shikin on 2007-10-30 18:25:38 as read
  • notes Statistical significance for genomewide studies.
    Proc Natl Acad Sci U S A, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445.
    by JD Storey, R Tibshirani
    posted to statistics by shikin on 2007-10-30 17:35:11 as read along with 19 people and 1 group bpcusack sconlan zhouyu roys jyuh textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso wirawan BrianTomasik Bioinformatics
  • notes False discovery rate, sensitivity and sample size for microarray studies
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3017-3024.
    by Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner
    posted to genomics statistics by shikin on 2007-10-29 18:46:37 as read along with 2 people ugengma wirawan
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