shikin's systems_biology [93 articles] Export

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	Network component analysis: reconstruction of regulatory signals in biological systems. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15522-15527. by James C. Liao, Riccardo Boscolo, Young-Lyeol L. Yang, Linh My M. Tran, Chiara Sabatti, Vwani P. Roychowdhury posted to transfac systems_biology network gene_expression by shikin on 2009-11-27 13:50:46 as along with 3 people davebridges arne bertelsen
	Can systems biology understand pathway activation? Gene expression signatures as surrogate markers for understanding the complexity of pathway activation. [My Copy] Current genomics, Vol. 9, No. 5. (August 2008), pp. 349-360. by Hiraku Itadani, Shinji Mizuarai, Hidehito Kotani posted to systems_biology pathway-analysis cancer by shikin on 2009-09-23 17:55:26 as
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted to breast cancer cnv genego synergy systems_biology by shikin on 2009-07-06 14:09:04 as along with 4 people and 2 groups jfr ipark-kaist chrisamiller Zephyrus GeneGo Breast Cancer Reading Club
	Genetic and environmental pathways to complex diseases [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 46. by Julia Gohlke, Reuben Thomas, Yonqing Zhang, et al.Michael Rosenstein, Allan Davis, Cynthia Murphy, Kevin Becker, Carolyn Mattingly, Christopher Portier posted to pathway-analysis systems_biology by shikin on 2009-05-06 19:34:52 as along with 1 person and 1 group HEIRS HEIRS - Environmental Illness Research
	Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6447-6452. by Benedict Anchang, Mohammad J. Sadeh, Juby Jacob, et al.Achim Tresch, Marcel O. Vlad, Peter J. Oefner, Rainer Spang posted to gene_expression stem_cells systems_biology by shikin on 2009-04-22 11:31:01 as along with 4 people pkm abhishek_tiwari trfield deanmalmgren
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted to gene_expression genomics systems_biology by shikin on 2009-04-22 11:22:45 as along with 13 people zufar frohike guhjy dipenps coela Scis0000002 alweber daforerog TRHvidsten trfield deanmalmgren provero roys
	Gene-set approach for expression pattern analysis [My Copy] Brief Bioinform, Vol. 9, No. 3. (1 May 2008), pp. 189-197. by Dougu Nam, Seon-Young Kim posted to gsea pathway-analysis systems_biology by shikin on 2009-04-03 20:10:44 as along with 18 people bertelsen srp33 tonamswish kemalpak ipark-kaist ihpark ptrobajo guhjy seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
	Integrated analysis of breast cancer cell lines reveals unique signaling pathways [My Copy] Genome Biology, Vol. 10, No. 3. (25 March 2009), R31. by Laura Heiser, Nicholas Wang, Carolyn Talcott, et al.Keith Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara Weber, Sylvie Laquerre, Jeffrey Jackson, Richard Wooster, Wen Kuo, Joe Gray, Paul Spellman posted to breast cancer pathway-analysis systems_biology by shikin on 2009-03-25 20:02:45 as along with 4 people and 1 group ipark-kaist jfr thegoose Stew Bioinformatics - CRUK
	Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 32. by Wen H. Lin, Wei C. Liu, Ming J. Hwang posted to network ppi systems_biology by shikin on 2009-03-25 20:01:56 as along with 1 person guhjy
	A systems approach to prion disease [My Copy] Molecular Systems Biology, Vol. 5 (24 March 2009) by Daehee Hwang, Inyoul Y. Lee, Hyuntae Yoo, et al.Nils Gehlenborg, Ji-Hoon Cho, Brianne Petritis, David Baxter, Rose Pitstick, Rebecca Young, Doug Spicer, Nathan D. Price, John G. Hohmann, Stephen J. DeArmond, George A. Carlson, Leroy E. Hood posted to functional_analysis nature_sysbio_08 systems_biology by shikin on 2009-03-25 14:01:24 as along with 7 people and 1 group ngehlenborg daveGerrard fenghezi renatomilani grahamc jdoconnell zufar Marcotte_Lab
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to meta-analysis systems_biology by shikin on 2009-03-25 13:56:42 as along with 21 people and 4 groups daforerog jimineep ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell Jones, Roderick Jensen, et al.Stephen Harris, Roger Perkins, Federico Goodsaid, Lei Guo, Lisa Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin Barbacioru, Vincent Bertholet, Xiaoxi Cao, Tzu M. Chu, Patrick Collins, Xiao H. Fan, Felix Frueh, James Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest Kawasaki, Quan Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron Peterson, Raj Puri, Richard Shippy, Zhenqiang Su, Yongming Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Wang, Janet Warrington, James Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell Wolfinger, Weida Tong posted to functional_analysis gene_expression microarray normalization systems_biology by shikin on 2009-02-24 13:49:14 as along with 16 people and 1 group mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee rdiaz jfr ugengma dswan guhjy GeeSharpMinor ptrobajo Jonesy Bioinformatics
	Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 15. (11 April 2006), pp. 5923-5928. by L. Ein-Dor, O. Zuk, E. Domany posted to cancer signature systems_biology by shikin on 2009-02-17 18:06:33 as along with 9 people lwaldron ipark-kaist ilyashl dolchan zufar bedo akastrin aviad_work frohike
	Outcome signature genes in breast cancer: is there a unique set? [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 2. (15 January 2005), pp. 171-178. by Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, Eytan Domany posted to breast cancer signature systems_biology by shikin on 2009-02-17 18:05:31 as along with 6 people and 2 groups ptrobajo vertikalist zufar frohike fishtank winterschlaefer BTS-PT-AS-CS Bioinformatics
	The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 524-531. by M. Hucka, A. Finney, H. M. Sauro, et al.H. Bolouri, J. C. Doyle, H. Kitano, and the rest of the SBML Forum:, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J. H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novere, L. M. Loew, D. Lucio, P. Mendes, E. Minch, E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K. Takahashi, M. Tomita, J. Wagner, J. Wang posted to annotation kinetics_modeling systems_biology by shikin on 2009-02-09 19:25:04 as along with 20 people and 2 groups jporternj daforerog whitead antonkratz michaelbarton allysonlister rh020 subhacom irenas husain easr balajis wnpx jbchang lenov nicholasflann pmendes csanford AlexanderPico dullhunk Jiang Research Group dbk-lab
	Stochastic P systems and the simulation of biochemical processes with dynamic compartments. [My Copy] Bio Systems, Vol. 91, No. 3. (March 2008), pp. 458-472. by Antoine Spicher, Olivier Michel, Mikolaj Cieslak, Jean-Louis L. Giavitto, Przemyslaw Prusinkiewicz posted to kinetics_modeling method systems_biology by shikin on 2009-02-09 17:45:30 as along with 2 people cokelaer jvb
	Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes [My Copy] Bioinformatics, Vol. 23, No. 20. (15 October 2007), pp. 2800-2802. by Sean Sedwards, Tommaso Mazza posted to kinetics_modeling systems_biology by shikin on 2009-02-09 17:41:49 as along with 1 person Minty
	Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by Attila Csikasz-Nagy, Orsolya Kapuy, Attila Toth, et al.Csaba Pal, Lars J. Jensen, Frank Uhlmann, John J. Tyson, Bela Novak posted to kinetics_modeling systems_biology by shikin on 2009-02-09 17:22:49 as along with 3 people tmmurali larsjuhljensen renatomilani
	Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 237-242. by Lina Chen, Liangcai Zhang, Yan Zhao, et al.Liangde Xu, Yukui Shang, Qian Wang, Wan Li, Hong Wang, Xia Li posted to genomics gwas pathway-analysis systems_biology by shikin on 2009-02-04 17:09:57 as along with 8 people dolchan kimorley jfr zufar guhjy tg150 imina pkonings
	Cost-effective strategies for completing the interactome [My Copy] Nat Meth, Vol. 6, No. 1. (14 January 2009), pp. 55-61. by Ariel S. Schwartz, Jingkai Yu, Kyle R. Gardenour, Russell L. Finley Jr, Trey Ideker posted to ideker method systems_biology by shikin on 2008-12-30 19:07:24 as along with 4 people lawraga guhjy mhamada eetadic
	Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. [My Copy] Genome biology, Vol. 9, No. 9. (2008) by Sami Kilpinen, Reija Autio, Kalle Ojala, et al.Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I. Skotheim, Mari Björkman, John-Patrick P. Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi posted to gene_expression genomics systems_biology by shikin on 2008-10-07 19:22:46 as along with 10 people and 1 group zufar daforerog jfr grahamc pengchy imina guhjy klo fpattyn dolchan GeneGo
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to cancer genego genomics systems_biology by shikin on 2008-09-08 14:08:41 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shigepong Roswell Cancer Crosstalk GeneGo
	Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses [My Copy] Science (4 September 2008), 1164368. by Sian Jones, Xiaosong Zhang, D. Williams Parsons, et al.Jimmy C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E. Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer genego genomics pancreas systems_biology by shikin on 2008-09-08 13:52:48 as along with 18 people and 3 groups zufar jbhiatt dolchan wimufi jo_davies srp33 jfr whh98 roys cmzmasek thomaskelder fongkoh AlexanderPico SaraNasser renatomilani brianb songpku giovenko ConklinLab GeneGo Roswell Cancer Crosstalk
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer genego genomics systems_biology by shikin on 2008-09-08 13:52:08 as along with 15 people and 2 groups VGreiff stubrown Zephyrus zufar dolchan frohike caseybrown wimufi jfr srp33 renatomilani brianb aheilbut songpku giovenko GeneGo Roswell Cancer Crosstalk
	Systems biology for cancer. [My Copy] Current opinion in oncology, Vol. 17, No. 1. (January 2005), pp. 44-48. by I. G. Khalil, C. Hill posted to network systems_biology by shikin on 2008-05-19 18:11:38 as along with 4 people and 1 group Borelli tonamswish vingron wnpx GeneGo
	Computational systems biology. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210. by Hiroaki Kitano posted to systems_biology by shikin on 2008-05-19 17:14:50 as along with 25 people and 6 groups schwartzjmc jporternj tom4m3 schmidtm jaimie nedwards dansullivanblk ggallone daforerog reyez frohike irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc maburkitt Jarman Lab dbk-lab TCR_Signaling SysbioMPI-TCells livingthing GeneGo
	Network Theory to Understand Microarray Studies of Complex Diseases [My Copy] Current Molecular Medicine, Vol. 6, No. 6. (September 2006), pp. 695-701. by Benson, Mikael, Breitling, Rainer posted to gene_expression network systems_biology by shikin on 2008-05-05 12:28:43 as along with 3 people iris_2001 karfunkel hedbag
	The large-scale organization of metabolic networks [My Copy] Nature, Vol. 407, No. 6804. (05 October 2000), pp. 651-654. by H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A. L. Barabasi posted to metabolomics network systems_biology thesis by shikin on 2008-05-04 17:10:53 as along with 30 people and 3 groups jmenche tomhebbron asadrahman sergiun dlobo schwartzjmc muraken kentz camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina dylanwalker GEB dbk-lab kdl
	Systems biology and new technologies enable predictive and preventative medicine. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 640-643. by Leroy Hood, James R. Heath, Michael E. Phelps, Biaoyang Lin posted to hood systems_biology by shikin on 2008-05-04 13:34:48 as along with 9 people and 1 group schmidtm daforerog Scis0000002 wnpx cconboy maburkitt AlexanderPico megraw raiyar GeneGo
	Regulatory gene networks and the properties of the developmental process [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 4. (18 February 2003), pp. 1475-1480. by Eric H. Davidson, David R. McClay, Leroy Hood posted to hood systems_biology by shikin on 2008-05-04 13:32:41 as along with 4 people dannya222 nsamways margaritis mjoach
	Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. [My Copy] Molecular & cellular proteomics : MCP, Vol. 1, No. 4. (April 2002), pp. 323-333. by T. J. Griffin, S. P. Gygi, T. Ideker, et al.B. Rist, J. Eng, L. Hood, R. Aebersold posted to systems_biology by shikin on 2008-05-04 13:30:30 as along with 1 group GeneGo
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to hood systems_biology by shikin on 2008-05-04 13:29:16 as along with 14 people and 3 groups pmendes myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar thomaskelder Bioinformatics steinmetzlab GeneGo
	Global properties of biological networks. [My Copy] Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 365-372. by M. G. Grigorov posted to network systems_biology by shikin on 2008-05-04 13:22:48 as along with 1 group GeneGo
	Systems biology, metabolic modelling and metabolomics in drug discovery and development. [My Copy] Drug discovery today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092. by Douglas B. Kell posted to metabolomics systems_biology by shikin on 2008-05-04 13:20:34 as along with 13 people and 2 groups peterli flbarroso schwartzjmc egonw irenas nicklynch alexg dullhunk mhucka raiyar fishtank alanrw gemmalholliday steinmetzlab GeneGo
	A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism. [My Copy] Drug metabolism and disposition: the biological fate of chemicals, Vol. 33, No. 3. (March 2005), pp. 474-481. by S. Ekins, E. Kirillov, E. A. Rakhmatulin, T. Nikolskaya posted to genego network systems_biology toxicology by shikin on 2008-05-04 13:19:07 as along with 1 group GeneGo
	Pathway mapping tools for analysis of high content data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350. by S. Ekins, Y. Nikolsky, A. Bugrim, E. Kirillov, T. Nikolskaya posted to genego pathway-analysis systems_biology by shikin on 2008-05-04 13:09:52 as along with 3 people and 1 group cgaugain thomaskelder AlexanderPico GeneGo
	Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms [My Copy] Xenobiotica, Vol. 36, No. 10-11. (8220), pp. 877-901. by Ekins, S., Bugrim, et al. A., Brovold, L., Kirillov, E., Nikolsky, Y., Rakhmatulin, E., Sorokina, S., Ryabov, A., Serebryiskaya, T., Melnikov, A., Metz, J., Nikolskaya, T. posted to genego method network systems_biology toxicology by shikin on 2008-05-04 13:08:06 as along with 1 group GeneGo
	Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis [My Copy] Genome Biology, Vol. 8, No. 9. (2007) by Robert Kleemann, Lars Verschuren, Marjan van Erk, et al.Yuri Nikolsky, Nicole Cnubben, Elwin Verheij, Age Smilde, Henk Hendriks, Susanne Zadelaar, Graham Smith, Valery Kaznacheev, Tatiana Nikolskaya, Anton Melnikov, Eva H. Camejo, Jan van der Greef, Ben van Ommen, Teake Kooistra posted to genego systems_biology by shikin on 2008-05-04 13:04:56 as along with 2 people and 1 group aconesa vinithepooh GeneGo
	Modelling microtubule patterns [My Copy] Nature Cell Biology, Vol. 8, No. 11., pp. 1204-1211. by Eric Karsenti, François Nédélec, Thomas Surrey posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:30:25 as along with 4 people and 2 groups rubendrr rahulthadani qwermish softsimu cytoskeleton-and-afm GeneGo
	Data-driven modelling of signal-transduction networks [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 820-828. by Kevin A. Janes, Michael B. Yaffe posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:29:57 as along with 8 people and 2 groups windman83 babakap cryptochrome brianb guhjy cdppublications winterschlaefer cdpwebadmin CDP GeneGo
	Physicochemical modelling of cell signalling pathways. [My Copy] Nature cell biology, Vol. 8, No. 11. (November 2006), pp. 1195-1203. by B. B. Aldridge, J. M. Burke, D. A. Lauffenburger, P. K. Sorger posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:29:25 as along with 10 people and 5 groups cannin abhishek_tiwari cjryan babakap tklee mattjb mhucka jaycopeland cdppublications burkey ComplexAdaptiveSystems DSTO-CAS SorgerLab CDP GeneGo
	Linking data to models: data regression [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (27 September 2006), pp. 813-819. by Khuloud Jaqaman, Gaudenz Danuser posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:29:10 as along with 5 people and 3 groups jxl nickluscombe glyg rahulthadani cdpwebadmin EC EBI-regulation GeneGo
	Collecting and organizing systematic sets of protein data. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 11. (November 2006), pp. 803-812. by John G. Albeck, Gavin MacBeath, Forest M. White, Peter K. Sorger, Douglas A. Lauffenburger, Suzanne Gaudet posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:28:47 as along with 7 people and 3 groups VGreiff tklee balajis massivemayhem jaycopeland cdppublications cdpwebadmin SorgerLab CDP GeneGo
	Modelling data across labs, genomes, space and time [My Copy] Nature Cell Biology, Vol. 8, No. 11., pp. 1190-1194. by Jason R. Swedlow, Suzanna E. Lewis, Ilya G. Goldberg posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:28:28 as along with 4 people and 1 group jfr glyg MrData scienbox GeneGo
	Linking publication, gene and protein data [My Copy] Nat Cell Biol, Vol. 8, No. 11. (November 2006), pp. 1183-1189. by Paul Kersey, Rolf Apweiler posted to nature_sysbio_08 systems_biology by shikin on 2008-05-04 12:28:11 as along with 2 people and 2 groups jfr giovanni GeschwindLab GeneGo
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to genomics systems_biology by shikin on 2008-05-04 12:12:12 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	The Structure and Function of Complex Networks [My Copy] SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256. by M. E. J. Newman posted to network systems_biology by shikin on 2008-04-21 12:01:58 as along with 37 people and 4 groups Sergey_gerbek halukbingol jsaramak tomhebbron jotwin LaurentHD vmarceau qqwert mrkn ocs brihea chibatching davidecellai diamantis panisson spool deanmalmgren pcarbo matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane nolodie stefanoallesina eustatic skumagai ilkert rrbarb ebalp Borelli complex networks Soslab Complex_Real_Networks EntrepreneurialRisks
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted to ppi systems_biology by shikin on 2008-04-17 18:35:59 as along with 20 people and 2 groups aceol MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes hplatero csanford carlk kdl Bioinformatics
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by ENCODE Project Consortium, Ewan Birney, John A. Stamatoyannopoulos, et al.Anindya Dutta, Roderic Guigó, Thomas R. Gingeras, Elliott H. Margulies, Zhiping Weng, Michael Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christoph M. Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A. Greenbaum, Robert M. Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, Nigel P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D. James, Brett E. Johnson, Ericka M. Johnson, Tristan T. Frum, Elizabeth R. Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C. Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William S. Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S. Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C. Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K. G. Srinivasan, Wing-Kin K. Sung, Hong Sain S. Ooi, Kuo Ping P. Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L. Tress, Alfonso Valencia, Siew Woh W. Choo, Chiou Yu Y. Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G. Clark, James B. Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S. Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M. Myers, Jane Rogers, Peter F. Stadler, Todd M. Lowe, Chia-Lin L. Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E. Antonarakis, Yutao Fu, Eric D. Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Gregory M. Cooper, George Asimenos, Colin N. Dewey, Minmei Hou, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R. Zhang, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D. Trinklein, Zhengdong D. Zhang, Leah Barrera, Rhona Stuart, David C. King, Adam Ameur, Stefan Enroth, Mark C. Bieda, Jonghwan Kim, Akshay A. Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B. Vega, Charlie W. Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J. Oberley, David Inman, Michael A. Singer, Todd A. Richmond, Kyle J. Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Cordelia F. Langford, David A. Nix, Ghia Euskirchen, Stephen Hartman, Alexander E. Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon H. Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K. Glass, M. Geoff Rosenfeld, Shelley Force F. Aldred, Sara J. Cooper, Anason Halees, Jane M. Lin, Hennady P. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yong Yu, Yijun Ruan, Vishwanath R. Iyer, Roland D. Green, Claes Wadelius, Peggy J. Farnham, Bing Ren, Rachel A. Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S. Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M. Kuhn, Donna Karolchik, Lluis Armengol, Christine P. Bird, Paul I. de Bakker, Andrew D. Kern, Nuria Lopez-Bigas, Joel D. Martin, Barbara E. Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B. Hallgrímsdóttir, Julian Huppert, Michael C. Zody, Gonçalo R. Abecasis, Xavier Estivill, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J. de Jong posted to genomics systems_biology by shikin on 2008-04-17 18:27:01 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr chad_davis kengg olympos blobbybirdman fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	The International HapMap Project [My Copy] Nature, Vol. 426, No. 6968. (18 December 2003), pp. 789-796. posted to genomics systems_biology by shikin on 2008-04-17 18:24:16 as along with 5 people and 1 group ekostem adijr tiago mbeautru jandot Bioinformatics

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gene_expression	97
systems_biology	93
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