shung's library 197 articles Export

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	RNA interference (RNAi) inhibits growth of Plasmodium falciparum. [My Copy] Molecular and biochemical parasitology, Vol. 119, No. 2. (February 2002), pp. 273-278. by L. McRobert, G. A. McConkey posted to no-tag by shung on 2009-04-25 14:16:38 as
	PartiGeneDB--collating partial genomes. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by J. M. Peregrín-Alvarez, A. Yam, G. Sivakumar, J. Parkinson posted to no-tag by shung on 2009-03-20 15:30:32 as
	Treatment of multifunctional enzymes in metabolic pathway analysis. [My Copy] Biophysical chemistry, Vol. 99, No. 1. (3 September 2002), pp. 63-75. by S. Schuster, I. Zevedei-Oancea posted to enzyme_prediction by shung on 2008-10-07 15:05:11 as
	Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. [My Copy] Genome Res, Vol. 8, No. 3. (March 1998), pp. 203-210. by H. Bono, H. Ogata, S. Goto, M. Kanehisa posted to enzyme_prediction by shung on 2008-10-07 15:04:30 as along with 2 people and 2 groups ana michC structural_bioinformatics Bioinformatics
	Prediction of enzyme function by combining sequence similarity and protein interactions [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Jordi Espadaler, Narayanan Eswar, Enric Querol, et al.Francesc Aviles, Andrej Sali, Marc M. Renom, Baldomero Oliva posted to enzyme_prediction by shung on 2008-10-07 15:01:37 as along with 2 people and 1 group neils aprildh31 Proteasome
	High precision multi-genome scale reannotation of enzyme function by EFICAz [My Copy] BMC Genomics, Vol. 7 (13 December 2006), 315. by Adrian K. Arakaki, Weidong Tian, Jeffrey Skolnick posted to enzyme_prediction by shung on 2008-10-07 15:00:54 as along with 6 people JeremyZucker ucbcjbm kiko2007 Pdarsen annotator_2006 ramensky
	Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2236-2244. by Diogo A. Latino, Qing-You Zhang, Joao Aires-De-Sousa posted to enzyme_prediction by shung on 2008-10-07 15:00:04 as along with 1 person mdstobbe
	Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions. [My Copy] J Am Chem Soc, Vol. 126, No. 50. (22 December 2004), pp. 16487-16498. by M. Kotera, Y. Okuno, M. Hattori, S. Goto, M. Kanehisa posted to enzyme_prediction by shung on 2008-10-07 14:52:59 as along with 6 people pauldobson JeremyZucker BragilMassoud alexg eweaver koerner
	Automation of gene assignments to metabolic pathways using high-throughput expression data. [My Copy] BMC Bioinformatics, Vol. 6 (31 August 2005) by L. Popescu, G. Yona posted to enzyme_prediction by shung on 2008-10-07 14:52:14 as along with 1 person jwortman
	Predicting enzyme function from sequence: a systematic appraisal. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 5 (1997), pp. 276-283. by I. Shah, L. Hunter posted to enzyme_prediction by shung on 2008-10-06 23:13:41 as
	Enzyme function less conserved than anticipated. [My Copy] J Mol Biol, Vol. 318, No. 2. (26 April 2002), pp. 595-608. by B. Rost posted to enzyme_prediction by shung on 2008-08-28 22:14:03 as along with 4 people sgoetz JeremyZucker kuhn cjeans
	Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico. [My Copy] Infect Genet Evol (20 January 2008) by Segun Fatumo, Kitiporn Plaimas, Jan-Philipp P. Mallm, et al.Gunnar Schramm, Ezekiel Adebiyi, Marcus Oswald, Roland Eils, Rainer König posted to no-tag by shung on 2008-03-27 14:36:45 as
	Identification of functional links between genes using phylogenetic profiles. [My Copy] Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1524-1530. by J. Wu, S. Kasif, C. DeLisi posted to no-tag by shung on 2008-02-28 19:21:25 as along with 3 people and 2 groups ana bioinfo winterschlaefer structural_bioinformatics Bioinformatics
	ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature [My Copy] BMC Biochemistry, Vol. 8 (27 July 2007), 14. by Andrew G. Mcdonald, Sinead Boyce, Gerard P. Moss, Henry B. F. Dixon, Keith F. Tipton posted to enzyme_prediction by shung on 2008-01-14 22:54:08 as along with 1 person ucbcjbm
	Evaluation of computational metabolic-pathway predictions for Helicobacter pylori. [My Copy] Bioinformatics, Vol. 18, No. 5. (May 2002), pp. 715-724. by S. M. Paley, P. D. Karp posted to no-tag by shung on 2008-01-08 22:51:08 as
	Predicting genes for orphan metabolic activities using phylogenetic profiles. [My Copy] Genome Biol, Vol. 7, No. 2. (2006) by L. Chen, D. Vitkup posted to no-tag by shung on 2008-01-05 21:07:02 as along with 1 person JeremyZucker
	A Systematic Map of Genetic Variation in Plasmodium falciparum [My Copy] PLoS Pathogens, Vol. 2, No. 6. (1 June 2006), e57. by Claire Kidgell, Sarah K. Volkman, Johanna Daily, et al.Justin O. Borevitz, David Plouffe, Yingyao Zhou, Jeffrey R. Johnson, Karine G. Le Roch, Ousmane Sarr, Omar Ndir, Soulyemane Mboup, Serge Batalov, Dyann F. Wirth, Elizabeth A. Winzeler posted to no-tag by shung on 2008-01-05 17:58:02 as along with 3 people APRegier Sharpshoot jkoella
	On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins. [My Copy] Gene, Vol. 378 (15 August 2006), pp. 19-30. by M. A. DePristo, M. M. Zilversmit, D. L. Hartl posted to no-tag by shung on 2008-01-05 17:56:23 as along with 1 person robfsouza
	Convergent Evolution of Enzyme Active Sites Is not a Rare Phenomenon [My Copy] Journal of Molecular Biology, Vol. 372, No. 3. (21 September 2007), pp. 817-845. by Pier F. Gherardini, Mark N. Wass, Manuela Helmer-Citterich, Michael J. Sternberg posted to enzyme_prediction by shung on 2008-08-22 16:25:58 as along with 8 people and 2 groups ucbcjbm barry tjimenez jjray chad_davis tny Minty sim82 structural_bioinformatics Bioinformatics
	Molecular genetic tools in Toxoplasma and Plasmodium: achievements and future needs. [My Copy] Current opinion in microbiology, Vol. 10, No. 4. (August 2007), pp. 349-356. by M. Meissner, M. S. Breinich, P. R. Gilson, B. S. Crabb posted to no-tag by shung on 2008-05-04 22:00:00 as
	New interventions for malaria: mining the human and parasite genomes. [My Copy] The American journal of tropical medicine and hygiene, Vol. 77, No. 6 Suppl. (December 2007), pp. 270-275. by Francine Ntoumi, Dominic P. Kwiatkowski, Mahamadou Diakité, Theonest K. Mutabingwa, Patrick E. Duffy posted to no-tag by shung on 2008-05-04 21:56:13 as
	Exploring functional genomics for drug target and therapeutics discovery in Plasmodia [My Copy] Acta Tropica, Vol. 105, No. 2. (February 2008), pp. 113-123. by L. Birkholtz, A. C. van Brummelen, K. Clark, et al.J. Niemand, E. Marechal, M. Llinas, A. I. Louw posted to no-tag by shung on 2008-05-04 21:54:35 as
	Localizing proteins in the cell from their phylogenetic profiles. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 22. (24 October 2000), pp. 12115-12120. by E. M. Marcotte, I. Xenarios, A. M. van Der Bliek, D. Eisenberg posted to no-tag by shung on 2008-04-18 15:50:21 as along with 6 people and 1 group chica thegoose2 oryadna tharris balajis raiyar C. elegans / WormBase
	Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 8. (13 April 1999), pp. 4285-4288. by Matteo Pellegrini, Edward M. Marcotte, Michael J. Thompson, David Eisenberg, Todd O. Yeates posted to no-tag by shung on 2008-04-18 15:48:18 as along with 15 people and 1 group calderonv jperkins pablocarb chica skembel Robinder dragonrez bicko lfriedl balajis opheliav tny ruvido winterschlaefer carlk kdl
	Context-sensitive data integration and prediction of biological networks [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2322-2330. by Chad L. Myers, Olga G. Troyanskaya posted to no-tag by shung on 2008-04-09 21:41:22 as along with 7 people tmmurali rdiaz grahamc iris_2001 nedwards carlk guhjy
	New Method for the Assessment of All Drug-Like Pockets Across a Structural Genome. [My Copy] J Comput Biol (11 March 2008) by George Nicola, Colin A A. Smith, Ruben Abagyan posted to no-tag by shung on 2008-03-27 14:35:59 as along with 1 person higueruelo
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted to no-tag by shung on 2008-03-10 21:35:14 as along with 19 people and 1 group daveGerrard greg badi ptrobajo tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin thomaskelder AlexanderPico GeneGo
	Metabolic network structure determines key aspects of functionality and regulation. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 190-193. by J. Stelling, S. Klamt, K. Bettenbrock, S. Schuster, E. D. Gilles posted to no-tag by shung on 2008-02-28 19:55:42 as along with 3 people wnpx CareyNadell Takayuki
	YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by R. Schwarz, P. Musch, A. von Kamp, et al.B. Engels, H. Schirmer, S. Schuster, T. Dandekar posted to no-tag by shung on 2008-02-28 19:45:23 as along with 2 people TobiasAbenius lflorez
	Exploring the diversity of complex metabolic networks. [My Copy] Bioinformatics (4 January 2005) by Vassily Hatzimanikatis, Chunhui Li, Justin A A. Ionita, Christopher S S. Henry, Matthew D D. Jankowski, Linda J J. Broadbelt posted to no-tag by shung on 2008-02-28 19:42:59 as along with 6 people pablocarb greg betainverse kuhn alexg jdiggans
	Analysis of metabolic networks using a pathway distance metric through linear programming. [My Copy] Metab Eng, Vol. 5, No. 3. (July 2003), pp. 211-219. by E. Simeonidis, S. C. Rison, J. M. Thornton, I. D. Bogle, L. G. Papageorgiou posted to no-tag by shung on 2008-02-28 19:39:47 as
	Pathway analysis in metabolic databases via differential metabolic display (DMD). [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 9. (September 2000), pp. 825-836. by R. Küffner, R. Zimmer, T. Lengauer posted to no-tag by shung on 2008-02-28 19:38:36 as along with 4 people laurabertens mdstobbe reyez kabookie
	Predicting synthetic rescues in metabolic networks [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Adilson E. Motter, Natali Gulbahce, Eivind Almaas, Albert-Laszlo Barabasi posted to no-tag by shung on 2008-02-28 19:02:02 as along with 10 people lflorez kentsis zwang bootsy biomcgary cabbagezs westoll shikin debasis tmmurali
	Aminoacyl-tRNA synthetases: essential and still promising targets for new anti-infective agents [My Copy] Expert Opinion on Investigational Drugs, Vol. 16, No. 5. (May 2007), pp. 573-593. by Ochsner, A. Urs, Sun, et al. Xicheng, Jarvis, Thale, Critchley, Ian, Janjic, Nebojsa posted to no-tag by shung on 2008-01-05 19:11:08 as
	Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution [My Copy] Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1270-1275. by Scott W. Roy, David Penny posted to no-tag by shung on 2008-01-05 17:55:02 as along with 1 person stajich
	The Edinburgh human metabolic network reconstruction and its functional analysis. [My Copy] Molecular systems biology, Vol. 3 (2007) by H. Ma, A. Sorokin, A. Mazein, et al.A. Selkov, E. Selkov, O. Demin, I. Goryanin posted to no-tag by shung on 2008-01-05 17:48:02 as along with 10 people JeremyZucker vpenelle peterli schwartzjmc Garamonfok dullhunk grahamc fishtank cjeans mdstobbe
	Regulation of metabolic networks by small molecule metabolites [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (13 March 2007), 88. by Alex Gutteridge, Minoru Kanehisa, Susumu Goto posted to no-tag by shung on 2008-01-05 16:52:02 as along with 4 people and 1 group JeremyZucker schwartzjmc marodoc aswin Bioinformatics
	Metabolic maps and functions of the <i>Plasmodium</i> mitochondrion [My Copy] FEMS Microbiology Reviews, Vol. 30, No. 4. (July 2006), pp. 596-630. by Giel G. van Dooren, Luciana M. Stimmler, Geoffrey I. Mcfadden posted to no-tag by shung on 2008-01-05 16:44:02 as along with 3 people mclark86 pauldobson shuzhens
	The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2968-2970. by Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin Schultz, Mark Gerstein posted to no-tag by shung on 2009-04-29 18:30:15 as along with 4 people guhjy frohike cswinburne dansullivanblk
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted to no-tag by shung on 2009-04-29 18:26:48 as along with 34 people and 3 groups JeremyZucker daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
	Protein domain identification and improved sequence similarity searching using PSI-BLAST. [My Copy] Proteins, Vol. 48, No. 4. (1 September 2002), pp. 672-681. by R. A. George, J. Heringa posted to no-tag by shung on 2008-08-21 22:11:57 as
	Bayesian analysis of new and old malaria parasite DNA sequence data demonstrates the need for more phylogenetic signal to clarify the descent of Plasmodium falciparum [My Copy] Parasitology Research, Vol. 101, No. 3. (August 2007), pp. 493-503. by Hagner, S., Misof, et al. B., Maier, W., Kampen, H. posted to no-tag by shung on 2008-05-04 22:05:23 as
	Advances in understanding the genetic basis of antimalarial drug resistance. [My Copy] Current opinion in microbiology, Vol. 10, No. 4. (August 2007), pp. 363-370. by E. H. Ekland, D. A. Fidock posted to no-tag by shung on 2008-05-04 22:03:01 as
	Cryoelectron tomography reveals periodic material at the inner side of subpellicular microtubules in apicomplexan parasites. [My Copy] The Journal of experimental medicine, Vol. 204, No. 6. (11 June 2007), pp. 1281-1287. by M. Cyrklaff, M. Kudryashev, A. Leis, et al.K. Leonard, W. Baumeister, R. Menard, M. Meissner, F. Frischknecht posted to no-tag by shung on 2008-04-28 16:26:24 as
	Accelerating the reconstruction of genome-scale metabolic networks. [My Copy] BMC bioinformatics, Vol. 7 (13 June 2006), 296. by R. A. Notebaart, F. H. van Enckevort, C. Francke, R. J. Siezen, B. Teusink posted to no-tag by shung on 2008-01-05 21:06:42 as along with 3 people and 1 group neilswainston eweaver JeremyZucker MetabolicModeling
	Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote. [My Copy] BMC Genomics, Vol. 5, No. 1. (12 October 2004) by P. Ward, L. Equinet, J. Packer, C. Doerig posted to no-tag by shung on 2008-01-05 18:04:43 as along with 1 person maxell
	Genome variation and evolution of the malaria parasite Plasmodium falciparum. [My Copy] Nat Genet (10 December 2006) by Daniel C C. Jeffares, Arnab Pain, Andrew Berry, et al.Anthony V V. Cox, James Stalker, Catherine E E. Ingle, Alan Thomas, Michael A A. Quail, Kyle Siebenthall, Anne-Catrin C. Uhlemann, Sue Kyes, Sanjeev Krishna, Chris Newbold, Emmanouil T T. Dermitzakis, Matthew Berriman posted to no-tag by shung on 2008-01-05 17:53:35 as along with 4 people aswin fernan xingxu Neeperando
	A genome-wide map of diversity in Plasmodium falciparum. [My Copy] Nat Genet (10 December 2006) by Sarah K K. Volkman, Pardis C C. Sabeti, David Decaprio, et al.Daniel E E. Neafsey, Stephen F F. Schaffner, Danny A A. Milner, Johanna P P. Daily, Ousmane Sarr, Daouda Ndiaye, Omar Ndir, Soulyemane Mboup, Manoj T T. Duraisingh, Amanda Lukens, Alan Derr, Nicole Stange-Thomann, Skye Waggoner, Robert Onofrio, Liuda Ziaugra, Evan Mauceli, Sante Gnerre, David B B. Jaffe, Joanne Zainoun, Roger C C. Wiegand, Bruce W W. Birren, Daniel L L. Hartl, James E E. Galagan, Eric S S. Lander, Dyann F F. Wirth posted to no-tag by shung on 2008-01-05 17:52:23 as along with 4 people aswin fernan xingxu jasonflannick
	Patterns of gene recombination shape var gene repertoires in Plasmodium falciparum: comparisons of geographically diverse isolates [My Copy] BMC Genomics, Vol. 8 (07 February 2007), 45. by Susan M. Kraemer, Sue A. Kyes, Gautam Aggarwal, et al.Amy L. Springer, Siri O. Nelson, Zoe Christodoulou, Leia M. Smith, Wendy Wang, Emily Levin, Chris I. Newbold, Peter J. Myler, Joseph D. Smith posted to no-tag by shung on 2008-01-05 17:51:10 as along with 1 person GeeSharpMinor
	The large-scale organization of metabolic networks [My Copy] Nature, Vol. 407, No. 6804. (05 October 2000), pp. 651-654. by H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A. L. Barabasi posted to no-tag by shung on 2008-01-05 16:54:54 as along with 30 people and 3 groups jmenche tomhebbron asadrahman sergiun dlobo schwartzjmc muraken kentz camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia pmendes stefanoallesina shikin dylanwalker GEB dbk-lab kdl

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