shuns's library 94 articles Export

	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis [My Copy] Physical Review Letters, Vol. 77 (1996), pp. 1905-1908. by M. M. Tirion posted to normal-mode by shuns on 2006-05-08 04:48:49 as along with 1 person apaydin
	The PerR transcription factor senses H2O2 by metal-catalysed histidine oxidation [My Copy] Nature, Vol. 440, No. 7082., pp. 363-367. by Jin-Won Lee, John D. Helmann posted to enzyme structure by shuns on 2006-03-16 10:18:15 as along with 1 person imouthesmp
	Structural basis for the spectral difference in luciferase bioluminescence [My Copy] Nature, Vol. 440, No. 7082., pp. 372-376. by Toru Nakatsu, Susumu Ichiyama, Jun Hiratake, et al.Adrian Saldanha, Nobuyuki Kobashi, Kanzo Sakata, Hiroaki Kato posted to enzyme structure by shuns on 2006-03-16 10:17:56 as along with 1 person y4su0
	Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis [My Copy] Nature, Vol. 440, No. 7082. (16 March 2006), pp. 368-371. by Leah C. Blasiak, FrÃ©dÃ©ric H. Vaillancourt, Christopher T. Walsh, Catherine L. Drennan posted to enzyme structure by shuns on 2006-03-16 10:16:45 as
	Structure of the Hydrophilic Domain of Respiratory Complex I from Thermus thermophilus [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1430-1436. by Leonid A. Sazanov, Philip Hinchliffe posted to structure by shuns on 2006-03-14 05:40:40 as
	Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1464-1467. by Bo Li, John P. Yu, Joseph S. Brunzelle, Gert N. Moll, Wilfred A. van der Donk, Satish K. Nair posted to structure by shuns on 2006-03-14 05:40:36 as
	Engineering Cooperativity in Biomotor-Protein Assemblies [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1468-1471. by Michael R. Diehl, Kechun Zhang, Heun J. Lee, David A. Tirrell posted to motor protein by shuns on 2006-03-14 05:40:28 as along with 3 people katiehumphry melting lingchong
	An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids. [My Copy] J Am Chem Soc, Vol. 128, No. 10. (15 March 2006), pp. 3138-3139. by B. R. Baker, R. Y. Lai, M. S. Wood, E. H. Doctor, A. J. Heeger, K. W. Plaxco posted to no-tag by shuns on 2006-03-14 04:33:24 as along with 1 person kengg
	Protein structural change upon ligand binding: linear response theory. [My Copy] Phys Rev Lett, Vol. 94, No. 7. (25 February 2005) by M. Ikeguchi, J. Ueno, M. Sato, A. Kidera posted to no-tag by shuns on 2006-03-07 08:49:31 as along with 1 person lna
	Architecture of Mammalian Fatty Acid Synthase at 4.5 A Resolution [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1258-1262. by Timm Maier, Simon Jenni, Nenad Ban posted to structure by shuns on 2006-03-07 00:26:59 as
	Architecture of a Fungal Fatty Acid Synthase at 5 A Resolution [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1263-1267. by Simon Jenni, Marc Leibundgut, Timm Maier, Nenad Ban posted to structure by shuns on 2006-03-07 00:26:53 as
	Ultrafast folding of a computationally designed trp-cage mutant: trp(2)-cage. [My Copy] J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 8. (2 March 2006), pp. 3759-3763. by M. R. Bunagan, X. Yang, J. G. Saven, F. Gai posted to protein-design by shuns on 2006-02-27 08:41:39 as
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted to normal-mode by shuns on 2006-02-21 02:16:59 as along with 12 people and 7 groups ahmetbakan csrocha BragilMassoud barry dimka aqeel yongzhao xdeupi choonpeng joergkurtwegner daevans LamBras structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed
	Recapitulation and Design of Protein Binding Peptide Structures and Sequences [My Copy] Journal of Molecular Biology, Vol. In Press, Corrected Proof by Vanita D. Sood, David Baker posted to protein-design by shuns on 2006-02-16 13:48:44 as along with 2 people and 1 group jwm anita structure-bii
	Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins [My Copy] PNAS, Vol. 103, No. 6. (7 February 2006), pp. 1744-1749. by Joanna Makowska, Sylwia Rodziewicz-Motowidlo, Katarzyna Baginska, et al.Jorge A. Vila, Adam Liwo, Lech Chmurzynski, Harold A. Scheraga posted to no-tag by shuns on 2006-02-08 05:59:35 as along with 1 person allmensch
	Autonomous artificial nanomotor powered by sunlight [My Copy] PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1178-1183. by Vincenzo Balzani, Miguel Clemente-Leon, Alberto Credi, et al.Belen Ferrer, Margherita Venturi, Amar H. Flood, Fraser J. Stoddart posted to chemical motor by shuns on 2006-02-02 13:33:45 as
	Computational Design of a Single Amino Acid Sequence that Can Switch between Two Distinct Protein Folds. [My Copy] J Am Chem Soc, Vol. 128, No. 4. (1 February 2006), pp. 1154-1161. by X. I. Ambroggio, B. Kuhlman posted to folding protein-design by shuns on 2006-01-30 01:59:41 as along with 5 people and 2 groups barry jwm kevinchannon bethbromley ca3295 structural_bioinformatics Bioinformatics
	Design and Evolution of New Catalytic Activity with an Existing Protein Scaffold [My Copy] Science, Vol. 311, No. 5760. (27 January 2006), pp. 535-538. by Hee-Sung Park, Sung-Hun Nam, Jin K. Lee, et al.Chang N. Yoon, Bengt Mannervik, Stephen J. Benkovic, Hak-Sung Kim posted to enzyme protein-design by shuns on 2006-01-27 04:25:23 as along with 4 people and 2 groups baiaixi dayjm marcius tny BioinfoCIPF SGU-CIPF
	Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited [My Copy] Nat Chem Biol, Vol. 2, No. 2. (25 December 2005), pp. 87-94. by Brian P. English, Wei Min, Antoine M. van Oijen, et al.Kang T. Lee, Guobin Luo, Hongye Sun, Binny J. Cherayil, S. C. Kou, X. Sunney Xie posted to enzyme kinetics model-system by shuns on 2006-01-24 03:47:09 as along with 2 people and 1 group xico Petersarkies WetBiology
	Mechanism of Dihydroneopterin Aldolase: A Molecular Dynamics Study of the Apo Enzyme and Its Product Complex [My Copy] Journal of Physical Chemistry, Vol. 110, No. 3. (2006), pp. 1443-1456. by Lishan Yao, Honggao Yan, Robert I. Cukier posted to enzyme ligand-binding mechianism by shuns on 2006-01-24 03:33:26 as
	All Electron Quantum Chemical Calculation of the Entire Enzyme System Confirms a Collective Catalytic Device in the Chorismate Mutase Reaction [My Copy] Journal of Physical Chemistry, Vol. 110, No. 3. (30 December 2006), pp. 1457-1463. by Toyokazu Ishida, Dmitri G. Fedorov, Kazuo Kitaura posted to enzyme fmo mechianism by shuns on 2006-01-24 03:31:19 as
	Knowledge-based design of target-focused libraries using protein-ligand interaction constraints. [My Copy] J Med Chem, Vol. 49, No. 2. (26 January 2006), pp. 490-500. by Z. Deng, C. Chuaqui, J. Singh posted to ligand-binding protein-design by shuns on 2006-01-24 02:25:23 as along with 1 person peprovy
	Computational Design of Heterochiral Peptides against a Helical Target. [My Copy] J Am Chem Soc, Vol. 128, No. 3. (25 January 2006), pp. 809-816. by Vikas Nanda, William F. Degrado posted to protein-design by shuns on 2006-01-20 03:33:41 as along with 1 person jjurban
	P versus Q: Structural reaction coordinates capture protein folding on smooth landscapes [My Copy] PNAS, Vol. 103, No. 3. (17 January 2006), pp. 586-591. by Samuel S. Cho, Yaakov Levy, Peter G. Wolynes posted to folding landscape by shuns on 2006-01-19 09:12:29 as
	Allosteric control of an ionotropic glutamate receptor with an optical switch [My Copy] Nat Chem Biol, Vol. 2, No. 1. (January 2006), pp. 47-52. by Matthew Volgraf, Pau Gorostiza, Rika Numano, Richard H. Kramer, Ehud Y. Isacoff, Dirk Trauner posted to protein-design by shuns on 2006-01-17 02:49:43 as
	Structural Basis for Double-Stranded RNA Processing by Dicer [My Copy] Science, Vol. 311, No. 5758. (13 January 2006), pp. 195-198. by Ian J. Macrae, Kaihong Zhou, Fei Li, et al.Adrian Repic, Angela N. Brooks, Zacheus W. Cande, Paul D. Adams, Jennifer A. Doudna posted to rnai structure by shuns on 2006-01-13 06:32:31 as along with 5 people and 2 groups bertelsen dayjm marcius mtagaya yavanna BioinfoCIPF SGU-CIPF
	Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes. [My Copy] Structure (Camb), Vol. 13, No. 3. (March 2005), pp. 373-380. by J. Ma posted to normal-mode review by shuns on 2006-01-12 03:38:35 as along with 3 people RamuAnandakrishnan aqeel higueruelo
	Coarse-grained normal mode analysis in structural biology [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 5. (October 2005), pp. 586-592. by Ivet Bahar, Aj Rader posted to normal-mode by shuns on 2006-01-12 03:31:23 as along with 7 people and 2 groups BragilMassoud apaydin barry aqeel scis0000001 insectopalo higueruelo structural_bioinformatics Bioinformatics
	Packing defects as selectivity switches for drug-based protein inhibitors [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 323-328. by Ariel Fernandez, Ridgway Scott, Stephen R. Berry posted to docking drug inhibitor by shuns on 2006-01-11 03:39:45 as along with 1 person tjimenez
	From The Cover: A simple physical model for scaling in protein-protein interaction networks [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 311-316. by Eric J. Deeds, Orr Ashenberg, Eugene I. Shakhnovich posted to protein protein- by shuns on 2006-01-11 03:39:29 as along with 5 people and 1 group phoenixzxl lfriedl ruvido gcalda iris_2001 kdl
	Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 317-322. by Gisela Branden, Ashtamurthy S. Pawate, Robert B. Gennis, Peter Brzezinski posted to proton-pump by shuns on 2006-01-11 03:39:08 as
	Primary steps of the photoactive yellow protein: Isolated chromophore dynamics and protein directed function [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 258-262. by I-Ren Lee, Wonchul Lee, Ahmed H. Zewail posted to no-tag by shuns on 2006-01-11 03:38:43 as
	Analysis of the kinesin superfamily: insights into structure and function. [My Copy] Trends Cell Biol, Vol. 15, No. 9. (September 2005), pp. 467-476. by H. Miki, Y. Okada, N. Hirokawa posted to kinesin review by shuns on 2006-01-10 08:37:38 as along with 2 people yuslinaz jarasch
	Ribosome exit tunnel can entropically stabilize alpha-helices [My Copy] PNAS, Vol. 102, No. 52. (27 December 2005), pp. 18956-18961. by Guy Ziv, Gilad Haran, D. Thirumalai posted to no-tag by shuns on 2006-01-04 02:42:10 as along with 1 person sikorski
	Correlation between evolutionary structural development and protein folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 18950-18955. by C. Nagao, T. P. Terada, T. Yomo, M. Sasai posted to folding by shuns on 2006-01-04 02:41:52 as along with 2 people and 2 groups apaydin marcius BioinfoCIPF SGU-CIPF
	Two independent mechanical events in the interaction cycle of skeletal muscle myosin with actin [My Copy] PNAS, Vol. 103, No. 1. (3 January 2006), pp. 87-92. by M. Capitanio, M. Canepari, P. Cacciafesta, et al.V. Lombardi, R. Cicchi, M. Maffei, F. S. Pavone, R. Bottinelli posted to myosin by shuns on 2006-01-04 02:37:12 as
	Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state. [My Copy] Proc Natl Acad Sci U S A (14 December 2005) by Dror Tobi, Ivet Bahar posted to bound-unbound by shuns on 2006-01-04 02:36:45 as along with 3 people apaydin aqeel insectopalo
	Specificity versus stability in computational protein design. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 36. (6 September 2005), pp. 12724-12729. by D. N. Bolon, R. A. Grant, T. A. Baker, R. T. Sauer posted to protein-design by shuns on 2006-01-03 06:10:40 as
	A search algorithm for fixed-composition protein design. [My Copy] J Comput Chem, Vol. 27, No. 3. (27 December 2005), pp. 375-378. by Geoffrey K K. Hom, Stephen L L. Mayo posted to protein-design by shuns on 2005-12-30 13:01:33 as
	HMC algorithm with multiple time scale integration and mass preconditioning [My Copy] Computer Physics Communications, Vol. 174, No. 2. (15 January 2006), pp. 87-98. by C. Urbach, K. Jansen, A. Shindler, U. Wenger posted to method technical by shuns on 2005-12-30 06:49:38 as
	Generalized-ensemble algorithms for molecular simulations of biopolymers. [My Copy] Biopolymers, Vol. 60, No. 2. (2001), pp. 96-123. by A. Mitsutake, Y. Sugita, Y. Okamoto posted to ensemble molecular-dynamics by shuns on 2005-12-30 06:43:09 as along with 3 people dgruiz baaden andreasauerwein
	Fragment molecular orbital method: an approximate computational method for large molecules [My Copy] Chemical Physics Letters, Vol. 313, No. 3. (12 November 1999), pp. 701-706. by K. Kitaura, E. Ikeo, T. Asada, T. Nakano, M. Uebayasi posted to fmo method by shuns on 2005-12-30 06:41:17 as
	Fragment molecular orbital method: application to molecular dynamics simulation, 'ab initio FMO-MD' [My Copy] Chemical Physics Letters, Vol. 372, No. 3. (29 April 2003), pp. 342-347. by Y. Komeiji, T. Nakano, K. Fukuzawa, et al.Y. Ueno, Y. Inadomi, T. Nemoto, M. Uebayasi, D. G. Fedorov, K. Kitaura posted to fmo method molecular-dynamics by shuns on 2005-12-30 06:40:49 as
	Model for kinetics of wild-type and mutant kinesins. [My Copy] Biosystems (22 December 2005) by Ping Xie, Shuo-Xing X. Dou, Peng-Ye Y. Wang posted to no-tag by shuns on 2005-12-30 06:28:25 as along with 3 people and 2 groups benlin barry qwermish structural_bioinformatics Bioinformatics
	Structural genomics analysis of alternative splicing and application to isoform structure modeling. [My Copy] Proc Natl Acad Sci U S A (14 December 2005) by Peng Wang, Bo Yan, Jun-Tao T. Guo, Chindo Hicks, Ying Xu posted to bioinformatics modeling by shuns on 2005-12-28 03:19:37 as along with 4 people and 2 groups Cortel marcius penka antonkratz BioinfoCIPF SGU-CIPF
	Plasticity of enzyme active sites [My Copy] Trends in Biochemical Sciences, Vol. 27, No. 8. (1 August 2002), pp. 419-426. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted to no-tag by shuns on 2005-12-22 06:12:20 as along with 1 person tny
	Interaction of kinesin motors, microtubules, and MAPs [My Copy] Journal of Muscle Research and Cell Motility, Vol. 27, No. 2. (17 February 2006), pp. 125-137. by X. Mar, A., R. Mulle, et al. J., W. Mandelko, -M, R. Hoenge, A., W. Mandelko, E. posted to kinesin review by shuns on 2005-12-22 02:58:11 as along with 3 people and 1 group imouthesmp rubendrr balicea cytoskeleton-and-afm
	Structural analysis of the ZEN-4/CeMKLP1 motor domain and its interaction with microtubules. [My Copy] J Struct Biol (14 December 2005) by Dilem Hizlan, Masanori Mishima, Peter Tittmann, Heinz Gross, Michael Glotzer, Andreas Hoenger posted to kinesin structure by shuns on 2005-12-22 02:54:21 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Kinesin's moonwalk. [My Copy] Curr Opin Cell Biol (14 December 2005) by Nicholas J J. Carter, Robert A A. Cross posted to kinesin review by shuns on 2005-12-22 02:53:19 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	The tethered motor domain of a kinesin-microtubule complex catalyzes reversible synthesis of bound ATP. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 51. (20 December 2005), pp. 18338-18343. by D. D. Hackney posted to kinesin reversibility by shuns on 2005-12-22 02:51:52 as

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kinesin	18
structure	18
protein	15
motor	10
design	9
protein-design	9
myosin	9
mechianism	9
review	8
enzyme	7
computational	4
normal-mode	4
fmo	3
folding	3
dynamics	3
landscape	3
method	3
molecular	3
technical	2
statistical	2
ligand-binding	2
microtuble	2
molecular-dynamics	2
free-energy	2
monte-carlo	2
physics	2
bound-unbound	2
reversibility	1
modeling	1
statistic	1
inhibitor	1
rnai	1
proton-pump	1
metropolis	1
minima	1
drug	1
groel	1
triangulation	1
chemical	1
elastic-network	1
compare	1
bioinformatics	1
ewald	1
annealing	1
docking	1
ensemble	1
hook	1
atp	1
thermodynamic	1
quasi-monte-carlo	1
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separation	1
algorithm	1
protein-	1
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