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	High-resolution DNA binding specificity analysis of yeast transcription factors [My Copy] Genome research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey Byers, Rachel Mccord, et al.Zhenwei Shi, Michael Berger, Daniel Newburger, Katrina Saulrieta, Zachary Smith, Mita Shah, Mathangi Radhakrishnan, Anthony Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tvs Murthy, Joshua Labaer, Martha L. L. Bulyk posted to co-regulation dna_binding_specificity experimental pbm s_cerevisiae tfbs transcription transcription_regulation by siebert on 2009-05-20 16:31:56 as along with 9 people matted austin_mcdonald dolchan rpatward xwbcn absterga djkt kristallreiner aalibes
	Diversity and complexity in DNA recognition by transcription factors [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to dna_binding_specificity experimental mouse pbm tfbs transcription transcription_regulation by siebert on 2009-05-20 11:55:56 as along with 25 people and 1 group vingron bsamal sebastien_vigneau nklee sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard JustinCrocker burak aalibes dipenps roys emptyhb tmmurali RockmanLab
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to coordination experimental localization regulation s_cerevisiae transcription transcription_regulation by siebert on 2009-04-07 09:22:05 as along with 8 people and 1 group bertelsen ellarond dpollard erel10 inesdesantiago raik caseybrown jjray RockmanLab
	A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome [My Copy] Genome Research, Vol. 18, No. 7. (12 July 2008), pp. 1073-1083. by Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, et al.Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, B. Franklin Pugh posted to experimental nfr nucleosome nucleosome_map s_cerevisiae statistical_positioning by siebert on 2009-03-06 15:27:37 as along with 7 people hagechouchin443 humburg talponer sonjadaniela vega aalibes gdb
	Normalization and experimental design for ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (25 June 2007), 219. by Shouyong Peng, Artyom A. Alekseyenko, Erica Larschan, Mitzi I. Kuroda, Peter J. Park posted to chip-on-chip experimental normalization by siebert on 2009-02-19 13:06:54 as along with 7 people and 2 groups rschulz guhjy kengg Stew yevishere caseybrown baldigroup EisenLab Plantandetc
	Model-based analysis of tiling-arrays for ChIP-chip [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462. by W. E. Johnson, W. Li, C. A. Meyer, et al.R. Gottardo, J. S. Carroll, M. Brown, X. S. Liu posted to chip-on-chip dna_binding_specificity experimental tiling_microarrays by siebert on 2009-01-29 16:51:38 as along with 11 people and 1 group ashishanand idonaldson mcm rgottardo GeeSharpMinor kengg nicholso talponer caseybrown bertelsen bozdagd Plantandetc
	High-resolution computational models of genome binding events [My Copy] Nat Biotech, Vol. 24, No. 8. (09 August 2006), pp. 963-970. by Yuan Qi, Alex Rolfe, Kenzie D. Macisaac, et al.Georg K. Gerber, Dmitry Pokholok, Julia Zeitlinger, Timothy Danford, Robin D. Dowell, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to chip-on-chip deconvolution dna_binding_specificity experimental tiling_microarrays by siebert on 2009-01-22 13:22:32 as along with 9 people and 1 group humburg arsyed Scis0000002 Stew jfr wnpx ccr caseybrown inesdesantiago Bioinformatics - CRUK
	Identifying transcription factor functions and targets by phenotypic activation [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 32. (8 August 2006), pp. 12045-12050. by G. Chua, Q. D. Morris, R. Sopko, et al.M. D. Robinson, O. Ryan, E. T. Chan, B. J. Frey, B. J. Andrews, C. Boone, T. R. Hughes posted to experimental expression overexpression phenotypic_activation transcription_factors by siebert on 2008-12-09 10:18:18 as along with 4 people and 1 group raiyar indigoviolet koller hplatero EisenLab
	High-throughput assay for determining specificity and affinity of protein-DNA binding interactions [My Copy] Nat Protoc, Vol. 1, No. 1. (2006), pp. 215-222. by O. Hallikas, J. Taipale posted to dna_binding_specificity experimental protein_dna_interaction protocol by siebert on 2008-11-26 09:01:40 as along with 1 person Terkko
	Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping [My Copy] Nat Genet, Vol. 40, No. 8. (2008), pp. 977-986. by Natalie Dutrow, David A. Nix, Derick Holt, et al.Brett Milash, Brian Dalley, Erick Westbroek, Timothy J. Parnell, Bradley R. Cairns posted to experimental hybmap s_pombe transcription transcriptome by siebert on 2008-08-01 14:21:38 as along with 2 people jbhiatt caseybrown
	Transcriptional regulatory networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by T. I. Lee, N. J. Rinaldi, F. Robert, et al.D. T. Odom, Z. Bar-Joseph, G. K. Gerber, N. M. Hannett, C. T. Harbison, C. M. Thompson, I. Simon, J. Zeitlinger, E. G. Jennings, H. L. Murray, D. B. Gordon, B. Ren, J. J. Wyrick, J. B. Tagne, T. L. Volkert, E. Fraenkel, D. K. Gifford, R. A. Young posted to chip-on-chip experimental regulation regulatory_networks s_cerevisiae transcription transcription_factors transcription_regulation by siebert on 2008-07-30 14:18:08 as along with 34 people and 2 groups mmm8668tw frohike viren4388 mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest dbk-lab TNT
	Genetic reconstruction of a functional transcriptional regulatory network [My Copy] Nat Genet (8 April 2007) by Zhanzhi Hu, Patrick J. J. Killion, Vishwanath R. R. Iyer posted to experimental expression microarrays regulation regulatory_networks s_cerevisiae transcription transcription_regulation by siebert on 2008-07-30 14:13:28 as along with 15 people and 6 groups sergiun TheresaNiederberger akraemer behindtherabbit ptrobajo dpollard xico nickluscombe zwang lizabeth dejori xingxu naegele czeller mapplab Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
	The transcriptional landscape of the Yeast genome defined by RNA sequencing [My Copy] Science (May 2008), 1158441. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to experimental rna-seq s_cerevisiae transcription transcriptome by siebert on 2008-07-23 09:38:42 as

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transcription	49
s_cerevisiae	26
transcription_regulation	24
regulation	20
review	15
transcription_factors	13
experimental	13
regulatory_networks	11
transcription_initiation	10
rna_pol_ii	8
expression	8
nucleosome	8
chip-on-chip	8
mediator	7
transcription_elongation	5
cis-regulatory_modules	5
transcriptome	5
tfbs	5
microarray_analysis	5
crm	5
dna_binding_specificity	5
networks	4
microarrays	4
thermodynamic_model	4
nucleosome_occupancy	4
mouse	4
network_inference	4
bayesian_networks	4
statistical_mechanics	3
transcription_modules	3
spt6	3
probabilistic_framework	3
mirna	3
e_coli	3
methods	3
r	3
nucleosome_map	3
programming	3
r_package	3
tiling_microarrays	3
core_promoter_elements	3
remote_homology_detection	2
cis-regulatory_logic	2
clustering	2
histone_modification	2
yeastract	2
introduction	2
hybmap	2
mixture_model	2
pbm	2
fact	2
pwm	2
cellular_networks	2
spt16	2
rna-seq	2
expression_variability	2
cooperative_binding	2
database	2
s_pombe	2
rate-limiting_control	2
h_sapiens	2
d_melanogaster	2
neural_networks	2
nfr	2
ultrahigh_throughput_sequencing	2
cryptic_promoters	2
rna_pol_ii_stalling	2
chromatin	2
gibbs_sampler	1
multi-kernel_learning	1
sampling	1
expression_profiler	1
ensemble_centroid	1
stubb	1
developmental	1
microarray_quality	1
flo8	1
artificial_networks	1
eqtl	1
secondary_structure_prediction	1
subcircuits	1
dor	1
yeast	1
bayesian_regression	1
lstm	1
cage	1
stochastic_algorithms	1
encode	1
gene_oscillator	1
gui	1
compression	1
divergent_transcription	1
protein_dna_interaction	1
psipred	1
core	1
coordination	1
promoter	1
deconvolution	1
prpp	1
ahab	1
synthetic_promoters	1
hidden_markov_model	1
c_albicans	1
metropolis-hastings_algorithm	1
binding_site_correlation	1
phenotypic_activation	1
normalization	1
pssm	1
hmm	1
overexpression	1
protein_fold_recognition	1
application	1
mcmc	1
cuts	1
biojava	1
scholar_factor	1
ncrna	1
cross_species	1
biophysical_models	1
python	1
protein_protein_interaction	1
logistic_regression	1
felsenstein	1
pol_ii_enhancer_binding	1
genetic_networks	1
mammals	1
promoter-proximal_pausing	1
idr	1
psi-blast	1
bidirectional_promoters	1
hierarchical_networks	1
psam	1
disordered_regions	1
transcription_logic	1
probabilistic_graphical_models	1
phylogenetic_model	1
multi-class_learning	1
transcriptional_noise	1
long_short-term_memory	1
synthetic_biology	1
analysis	1
evolution	1
enhancers	1
genome	1
localization	1
open_id	1
research_id	1
protocol	1
markov_chain_monte_carlo	1
metabolic_network	1
api	1
statistical_positioning	1
parallel	1
hill_function	1
co-regulation	1

siebert's experimental [13 articles] Export Sort

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