siebert's s_cerevisiae [26 articles] Export

Recent papers added to siebert's library classified by the tag s_cerevisiae. You can also see everyone's s_cerevisiae.

	High-resolution DNA binding specificity analysis of yeast transcription factors [My Copy] Genome research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey Byers, Rachel Mccord, et al.Zhenwei Shi, Michael Berger, Daniel Newburger, Katrina Saulrieta, Zachary Smith, Mita Shah, Mathangi Radhakrishnan, Anthony Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tvs Murthy, Joshua Labaer, Martha L. L. Bulyk posted to co-regulation dna_binding_specificity experimental pbm s_cerevisiae tfbs transcription transcription_regulation by siebert on 2009-05-20 16:31:56 as along with 9 people matted austin_mcdonald dolchan rpatward xwbcn absterga djkt kristallreiner aalibes
	Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization [My Copy] Nat Genet, Vol. 41, No. 4. (01 March 2009), pp. 438-445. by Yair Field, Yvonne Fondufe-Mittendorf, Irene K. K. Moore, et al.Piotr Mieczkowski, Noam Kaplan, Yaniv Lubling, Jason D. D. Lieb, Jonathan Widom, Eran Segal posted to c_albicans evolution expression expression_variability nucleosome_map nucleosome_occupancy s_cerevisiae yeast by siebert on 2009-04-24 14:12:47 as along with 10 people and 1 group aprickett daveGerrard robfsouza TRHvidsten athma clearbluespring lp2 fenghezi djkt provero BergmanLab
	Intrinsic variability of gene expression encoded in nucleosome positioning sequences [My Copy] Nature genetics (1 March 2009) by Jung, Young-Joon J. Kim posted to expression_variability nucleosome nucleosome_occupancy s_cerevisiae by siebert on 2009-04-16 12:37:54 as along with 10 people hagechouchin443 TRHvidsten athma absterga shikin inesdesantiago jjray fenghezi djkt provero
	Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 1038-1042. by Helen Neil, Christophe Malabat, Yves d'Aubenton-Carafa, Zhenyu Xu, Lars M. Steinmetz, Alain Jacquier posted to bidirectional_promoters cuts s_cerevisiae transcription transcription_initiation by siebert on 2009-04-09 14:20:44 as along with 7 people bartjacobse maximilianh jiezhou mtagaya djkt jbhiatt bpcusack
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to coordination experimental localization regulation s_cerevisiae transcription transcription_regulation by siebert on 2009-04-07 09:22:05 as along with 8 people and 1 group bertelsen ellarond dpollard erel10 inesdesantiago raik caseybrown jjray RockmanLab
	A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome [My Copy] Genome Research, Vol. 18, No. 7. (12 July 2008), pp. 1073-1083. by Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, et al.Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, B. Franklin Pugh posted to experimental nfr nucleosome nucleosome_map s_cerevisiae statistical_positioning by siebert on 2009-03-06 15:27:37 as along with 7 people hagechouchin443 humburg talponer sonjadaniela vega aalibes gdb
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. N. Smith, et al.Becky Drees, Rachel B. B. Brem, Leonid Kruglyak, Roger E. E. Bumgarner, Eric E. E. Schadt posted to bayesian_networks eqtl expression protein_protein_interaction regulatory_networks s_cerevisiae transcription_factors by siebert on 2009-01-28 08:44:28 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten ggallone jo_davies suteedee burak realzhang kengg maralena ptrobajo tmmurali guhjy roys marck caseybrown djkt srp33 Jarman Lab
	Epigenetics: How to lose a tail [My Copy] Nature, Vol. 456, No. 7224. (17 December 2008), pp. 885-886. by Mary A. Osley posted to chromatin histone_modification mouse nucleosome s_cerevisiae by siebert on 2009-01-19 12:34:13 as
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to cis-regulatory_logic cooperative_binding s_cerevisiae synthetic_promoters thermodynamic_model by siebert on 2008-12-09 13:53:35 as along with 17 people and 4 groups Vincent_Rouilly pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh roys dpollard druvus sebastien_vigneau pengchy sandersl djkt isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to chip-on-chip s_cerevisiae transcription transcription_factors transcription_regulation by siebert on 2008-12-09 10:15:17 as along with 29 people and 8 groups viren4388 daveGerrard Dulce talponer wowalz alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Using Bayesian networks to analyze expression data [My Copy] Journal of Computational Biology, Vol. 7, No. 3-4. (August 2000), pp. 601-620. by N. Friedman, M. Linial, I. Nachman, D. Pe'er posted to bayesian_networks expression genetic_networks microarray_analysis regulatory_networks s_cerevisiae by siebert on 2008-11-11 16:07:39 as along with 11 people ruichu yonatanf cswinburne brl ldfu dragonrez Schmidtc wnpx helsley heliopais srp33
	Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae [My Copy] Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 86-92. by J. Ihmels, R. Levy, N. Barkai posted to metabolic_network s_cerevisiae transcription transcription_modules transcription_regulation by siebert on 2008-08-28 12:07:39 as along with 7 people and 4 groups icases adepace nickluscombe koller arne shung hryk EisenLab EBI-regulation TNT dIEMoSIRIS
	Defining transcription modules using large-scale gene expression data [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 1993-2003. by J. Ihmels, S. Bergmann, N. Barkai posted to clustering microarray_analysis microarrays s_cerevisiae transcription transcription_modules by siebert on 2008-08-27 15:03:32 as along with 5 people and 3 groups aviad_work marcius adepace natstreet tvdbulck EisenLab BioinfoCIPF SGU-CIPF
	Revealing modular organization in the Yeast transcriptional network [My Copy] Nat Genet, Vol. 31, No. 4. (August 2002), pp. 370-377. by J. Ihmels, G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, N. Barkai posted to clustering microarray_analysis microarrays s_cerevisiae transcription transcription_modules by siebert on 2008-08-26 14:39:08 as along with 5 people and 2 groups adepace nickluscombe natstreet karfunkel ellakat EisenLab EBI-regulation
	Transcription elongation factors repress transcription initiation from cryptic sites [My Copy] Science, Vol. 301, No. 5636. (22 August 2003), pp. 1096-1099. by Craig D. Kaplan, Lisa Laprade, Fred Winston posted to cryptic_promoters flo8 s_cerevisiae spt6 by siebert on 2008-08-18 14:18:51 as along with 1 person skoch3
	Transcriptional regulatory networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by T. I. Lee, N. J. Rinaldi, F. Robert, et al.D. T. Odom, Z. Bar-Joseph, G. K. Gerber, N. M. Hannett, C. T. Harbison, C. M. Thompson, I. Simon, J. Zeitlinger, E. G. Jennings, H. L. Murray, D. B. Gordon, B. Ren, J. J. Wyrick, J. B. Tagne, T. L. Volkert, E. Fraenkel, D. K. Gifford, R. A. Young posted to chip-on-chip experimental regulation regulatory_networks s_cerevisiae transcription transcription_factors transcription_regulation by siebert on 2008-07-30 14:18:08 as along with 32 people and 2 groups viren4388 mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest dbk-lab TNT
	Genetic reconstruction of a functional transcriptional regulatory network [My Copy] Nat Genet (8 April 2007) by Zhanzhi Hu, Patrick J. J. Killion, Vishwanath R. R. Iyer posted to experimental expression microarrays regulation regulatory_networks s_cerevisiae transcription transcription_regulation by siebert on 2008-07-30 14:13:28 as along with 15 people and 6 groups sergiun TheresaNiederberger akraemer behindtherabbit ptrobajo dpollard xico nickluscombe zwang lizabeth dejori xingxu naegele czeller mapplab Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
	Two strategies for gene regulation by promoter nucleosomes [My Copy] Genome Research, Vol. 18, No. 7. (30 July 2008), pp. 1084-1091. by Itay Tirosh, Naama Barkai posted to nucleosome nucleosome_occupancy s_cerevisiae by siebert on 2008-07-28 13:21:29 as along with 11 people hagechouchin443 tonamswish athma emptyhb vega nklee roys fpattyn djkt dchughes aalibes
	A high-resolution atlas of nucleosome occupancy in Yeast [My Copy] Nat Genet, Vol. 39, No. 10. (16 September 2007), pp. 1235-1244. by William Lee, Desiree Tillo, Nicolas Bray, et al.Randall H. Morse, Ronald W. Davis, Timothy R. Hughes, Corey Nislow posted to nucleosome nucleosome_map nucleosome_occupancy s_cerevisiae by siebert on 2008-07-25 15:07:53 as along with 5 people idonaldson hagechouchin443 waszak aalibes epigenetics
	Genomic analysis of the hierarchical structure of regulatory networks [My Copy] PNAS, Vol. 103, No. 40. (October 2006), pp. 14724-14731. by Haiyuan Yu, Mark Gerstein posted to e_coli hierarchical_networks regulatory_networks s_cerevisiae transcription_regulation by siebert on 2008-07-23 09:38:42 as
	The transcriptional landscape of the Yeast genome defined by RNA sequencing [My Copy] Science (May 2008), 1158441. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to experimental rna-seq s_cerevisiae transcription transcriptome by siebert on 2008-07-23 09:38:42 as
	The Yeast mediator complex and its regulation [My Copy] Trends Biochem Sci, Vol. 30, No. 5. (May 2005), pp. 240-244. by S. Björklund, C. M. Gustafsson posted to mediator regulation review s_cerevisiae transcription by siebert on 2008-07-23 09:38:42 as
	Promoter activation when the ChIPs are down [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 2., pp. 96-97. by Brian A. Lewis, Danny Reinberg posted to chip-on-chip mediator s_cerevisiae transcription by siebert on 2008-07-23 09:38:41 as
	Activator-specific recruitment of Mediator in vivo [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 2. (January 2006), pp. 117-120. by Xiaochun Fan, Danny M. Chou, Kevin Struhl posted to chip-on-chip mediator s_cerevisiae transcription by siebert on 2008-07-23 09:38:41 as
	The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (January 2006) by M. C. Teixeira, P. Monteiro, P. Jain, et al.S. Tenreiro, A. R. Fernandes, N. P. Mira, M. Alenquer, A. T. Freitas, A. L. Oliveira, Sá I. Correia posted to database regulation s_cerevisiae transcription transcription_factors yeastract by siebert on 2008-07-23 09:38:40 as
	YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae [My Copy] Nucleic Acids Res (2007) by Pedro T. T. Monteiro, Nuno D. D. Mendes, Miguel C. C. Teixeira, et al.Sofia D'orey, Sandra Tenreiro, Nuno P. P. Mira, Hélio Pais, Alexandre P. P. Francisco, Alexandra M. M. Carvalho, Artur B. B. Lourenço, Isabel S. Correia, Arlindo L. L. Oliveira, Ana T. T. Freitas posted to database regulation s_cerevisiae transcription transcription_factors yeastract by siebert on 2008-07-23 09:38:40 as

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transcription	49
s_cerevisiae	26
transcription_regulation	24
regulation	20
review	15
transcription_factors	13
experimental	13
regulatory_networks	11
transcription_initiation	10
rna_pol_ii	8
expression	8
nucleosome	8
chip-on-chip	8
mediator	7
transcription_elongation	5
cis-regulatory_modules	5
transcriptome	5
tfbs	5
microarray_analysis	5
crm	5
dna_binding_specificity	5
networks	4
microarrays	4
thermodynamic_model	4
nucleosome_occupancy	4
mouse	4
network_inference	4
bayesian_networks	4
statistical_mechanics	3
transcription_modules	3
spt6	3
probabilistic_framework	3
mirna	3
e_coli	3
methods	3
r	3
nucleosome_map	3
programming	3
r_package	3
tiling_microarrays	3
core_promoter_elements	3
remote_homology_detection	2
cis-regulatory_logic	2
clustering	2
histone_modification	2
yeastract	2
introduction	2
hybmap	2
mixture_model	2
pbm	2
fact	2
pwm	2
cellular_networks	2
spt16	2
rna-seq	2
expression_variability	2
cooperative_binding	2
database	2
s_pombe	2
rate-limiting_control	2
h_sapiens	2
d_melanogaster	2
neural_networks	2
nfr	2
ultrahigh_throughput_sequencing	2
cryptic_promoters	2
rna_pol_ii_stalling	2
chromatin	2
gibbs_sampler	1
multi-kernel_learning	1
sampling	1
expression_profiler	1
ensemble_centroid	1
stubb	1
developmental	1
microarray_quality	1
flo8	1
artificial_networks	1
eqtl	1
secondary_structure_prediction	1
subcircuits	1
dor	1
yeast	1
bayesian_regression	1
lstm	1
cage	1
stochastic_algorithms	1
encode	1
gene_oscillator	1
gui	1
compression	1
divergent_transcription	1
protein_dna_interaction	1
psipred	1
core	1
coordination	1
promoter	1
deconvolution	1
prpp	1
ahab	1
synthetic_promoters	1
hidden_markov_model	1
c_albicans	1
metropolis-hastings_algorithm	1
binding_site_correlation	1
phenotypic_activation	1
normalization	1
pssm	1
hmm	1
overexpression	1
protein_fold_recognition	1
application	1
mcmc	1
cuts	1
biojava	1
scholar_factor	1
ncrna	1
cross_species	1
biophysical_models	1
python	1
protein_protein_interaction	1
logistic_regression	1
felsenstein	1
pol_ii_enhancer_binding	1
genetic_networks	1
mammals	1
promoter-proximal_pausing	1
idr	1
psi-blast	1
bidirectional_promoters	1
hierarchical_networks	1
psam	1
disordered_regions	1
transcription_logic	1
probabilistic_graphical_models	1
phylogenetic_model	1
multi-class_learning	1
transcriptional_noise	1
long_short-term_memory	1
synthetic_biology	1
analysis	1
evolution	1
enhancers	1
genome	1
localization	1
open_id	1
research_id	1
protocol	1
markov_chain_monte_carlo	1
metabolic_network	1
api	1
statistical_positioning	1
parallel	1
hill_function	1
co-regulation	1

siebert's s_cerevisiae [26 articles] Export

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