sjcockell's library 375 articles Export

	eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. [My Copy] Nucleic acids research (9 November 2009) by J. Muller, D. Szklarczyk, P. Julien, et al.I. Letunic, A. Roth, M. Kuhn, S. Powell, C. von Mering, T. Doerks, L. J. Jensen, P. Bork posted to protein-classification family-clustering by sjcockell on 2009-11-11 16:33:26 as
	Drug repositioning: identifying and developing new uses for existing drugs [My Copy] Nature Reviews Drug Discovery, Vol. 3, No. 8. (01 August 2004), pp. 673-683. by Ted T. Ashburn, Karl B. Thor posted to drug-repurposing drug-paper by sjcockell on 2009-11-05 17:15:11 as along with 3 people sameersoi BragilMassoud apostola
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to drug-paper blast by sjcockell on 2009-11-05 16:04:30 as along with 75 people and 6 groups krapnik azazello rshe mtaschuk niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	A gene atlas of the mouse and human protein-encoding transcriptomes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067. by Andrew I. Su, Tim Wiltshire, Serge Batalov, et al.Hilmar Lapp, Keith A. Ching, David Block, Jie Zhang, Richard Soden, Mimi Hayakawa, Gabriel Kreiman, Michael P. Cooke, John R. Walker, John B. Hogenesch posted to symatlas drug-paper by sjcockell on 2009-11-05 16:03:59 as along with 18 people and 2 groups daveGerrard harel_shein suizifish lawraga frohike daforerog dragonrez nickluscombe jeremymiller eukfn usagi-kirin cjeans asu shikin jdiezperezj caseybrown maralena gjuggler EBI-regulation GeschwindLab
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to pfam drug-paper by sjcockell on 2009-11-05 16:03:39 as along with 13 people badi MarcoAlvarez calderonv katholt urgi guhjy idoerg BioNica paszkows bicko niallhaslam gjuggler coela
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to kegg drug-paper by sjcockell on 2009-11-05 16:03:21 as along with 30 people Thaverkamp JeremyZucker jperkins vkwn pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	DrugBank: a knowledgebase for drugs, drug actions and drug targets. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), gkm958. by David S. Wishart, Craig Knox, An Chi C. Guo, et al.Dean Cheng, Savita Shrivastava, Dan Tzur, Bijaya Gautam, Murtaza Hassanali posted to drugbank drug-paper by sjcockell on 2009-11-05 16:01:58 as along with 8 people and 1 group ipark-kaist bertelsen daforerog Scis0000002 ajaymalik guhjy sobolevnrm dullhunk baker-group
	BioMart Central Portal--unified access to biological data. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W23-27. by Syed Haider, Benoit Ballester, Damian Smedley, Junjun Zhang, Peter Rice, Arek Kasprzyk posted to drug-paper biomart by sjcockell on 2009-11-05 16:00:33 as along with 18 people and 1 group Yanno isimpson cisevol brianb n00c stharward VGreiff nuin joergkurtwegner natstreet druvus dullhunk H-Arrietaumn Zephyrus guhjy daforerog neils renatomilani BergmanLab
	Estimating the cost of new drug development: is it really 802 million dollars? [My Copy] Health affairs (Project Hope), Vol. 25, No. 2. (r 2006), pp. 420-428. by Christopher P. Adams, Van V. Brantner posted to drug-discovery drug-design by sjcockell on 2009-11-05 15:39:31 as
	Repurposing with a Difference [My Copy] Science, Vol. 324, No. 5933. (12 June 2009), pp. 1394-1395. by Mark S. Boguski, Kenneth D. Mandl, Vikas P. Sukhatme posted to drug-repurposing by sjcockell on 2009-11-05 13:31:41 as along with 2 people slroberd sameersoi
	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to drug-repurposing drug-design by sjcockell on 2009-11-05 13:30:12 as along with 14 people and 1 group venancio okapi ahmetbakan zufar pablocarb zwang TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali seb1 abhishek_tiwari Journal picks
	Software Tool for Researching Annotations of Proteins: Open-Source Protein Annotation Software with Data Visualization. [My Copy] Analytical chemistry (19 October 2009) by Vivek N. Bhatia, David H. Perlman, Catherine E. Costello, Mark E. McComb posted to protein-annotation protein-analysis by sjcockell on 2009-10-22 12:11:35 as
	Mutagenesis Studies of Substrate Recognition and Catalysis in the Sortase A Transpeptidase from Staphylococcus aureus [My Copy] Journal of Biological Chemistry, Vol. 283, No. 21. (23 May 2008), pp. 14762-14771. by Matthew L. Bentley, Erin C. Lamb, Dewey G. McCafferty posted to sortase-substrates sortase aptamems by sjcockell on 2009-10-22 12:01:02 as
	Analysis of the Substrate Specificity of the Staphylococcus aureus Sortase Transpeptidase SrtA† [My Copy] Biochemistry, Vol. 43, No. 6. (1 February 2004), pp. 1541-1551. by Ryan G. Kruger, Balint Otvos, Brenda A. Frankel, Matthew Bentley, Patrick Dostal, Dewey G. McCafferty posted to sortase-substrates sortase aptamems by sjcockell on 2009-10-22 12:00:26 as
	Genome-Wide Detection and Analysis of Cell Wall-Bound Proteins with LPxTG-Like Sorting Motifs [My Copy] J. Bacteriol., Vol. 187, No. 14. (15 July 2005), pp. 4928-4934. by Jos Boekhorst, Mark W. H. J. de Been, Michiel Kleerebezem, Roland J. Siezen posted to sortase-substrates sortase aptamems by sjcockell on 2009-10-22 11:59:32 as
	Graph-based analysis and visualization of experimental results with ONDEX [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1383-1390. by Jacob Kohler, Jan Baumbach, Jan Taubert, et al.Michael Specht, Andre Skusa, Alexander Ruegg, Chris Rawlings, Paul Verrier, Stephan Philippi posted to ondex graph by sjcockell on 2009-10-21 16:27:11 as
	Improved reproducibility of reverse phase protein microarrays using array microenvironment normalization [My Copy] PROTEOMICS, Vol. 9999, No. 999A. (2009), NA. by Troy Anderson, Julia Wulfkuhle, Lance Liotta, Raimond L. Winslow, Emanuel Petricoin posted to protein-microarray by sjcockell on 2009-10-21 10:17:30 as
	Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Chang J. Shin, Melissa J. Davis, Mark A. Ragan posted to protein-protein-interactions interactome by sjcockell on 2009-10-21 10:16:42 as along with 1 person aceol
	The PSI semantic validator: a framework to check minimum information about a proteomics experiment compliance of proteomics data [My Copy] PROTEOMICS, Vol. 9999, No. 999A. (2009), NA. by Luisa Montecchi-Palazzi, Samuel Kerrien, Florian Reisinger, et al.Bruno Aranda, Andrew R. Jones, Lennart Martens, Henning Hermjakob posted to psi proteomics data-standards by sjcockell on 2009-10-21 10:16:13 as along with 1 person brianb
	Visual proteomics of the human pathogen Leptospira interrogans [My Copy] Nature Methods, Vol. advance online publication (18 October 2009) by Martin Beck, Johan A. Malmstrom, Vinzenz Lange, Alexander Schmidt, Eric W. Deutsch, Ruedi Aebersold posted to visual-proteomics by sjcockell on 2009-10-20 13:49:23 as
	Writing Memories with Light-Addressable Reinforcement Circuitry [My Copy] Vol. 139, No. 2. (16 October 2009), pp. 405-415. by Adam Claridge-Chang, Robert D. Roorda, Eleftheria Vrontou, et al.Lucas Sjulson, Haiyan Li, Jay Hirsh, Gero Miesenböck posted to no-tag by sjcockell on 2009-10-19 15:34:27 as along with 2 people brewbooks thegoose
	BioMart--biological queries made easy. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 22. by Damian Smedley, Syed Haider, Benoit Ballester, et al.Richard Holland, Darin London, Gudmundur Thorisson, Arek Kasprzyk posted to data-integration biomart bioinformatics-resources by sjcockell on 2009-10-16 15:29:20 as along with 29 people and 4 groups aaltenburger artaban421 lmichan jdbowes fgibson pekrau gangcai daforerog jfr fisherp allysonlister Stew grahamc dswan Zephyrus renatomilani guhjy natstreet pablocarb Cortel dbk mitko brianb ajaymalik neils kshameer dullhunk druvus cisevol Bioinformatics - CRUK Bioinformatics Roswell Cancer Crosstalk BergmanLab
	In situ metabolic profiling of single cells by laser ablation electrospray ionization mass spectrometry. [My Copy] Analytical chemistry, Vol. 81, No. 20. (15 October 2009), pp. 8265-8271. by Bindesh Shrestha, Akos Vertes posted to metabolomics mass-spectrometry laser-ablation-electrospray-ionization by sjcockell on 2009-10-15 12:34:47 as
	Atomic force microscopy: a powerful molecular toolkit in nanoproteomics. [My Copy] Proteomics (7 October 2009) by Yves F. Dufrêne posted to atomic_force_microscopy by sjcockell on 2009-10-09 17:04:21 as
	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Raja Jothi, S. Balaji, Arthur Wuster, et al.Joshua A. Grochow, Jorg Gsponer, Teresa M. Przytycka, L. Aravind, Madan M. Babu posted to network-analysis by sjcockell on 2009-10-09 14:03:31 as along with 12 people ashishanand apocapoc brianb dswan zwang fenghezi rdiaz megraw poirel TRHvidsten jjray biomcgary
	Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. [My Copy] Nature, Vol. 460, No. 7256. (6 August 2009), pp. 762-765. by Johan Malmström, Martin Beck, Alexander Schmidt, Vinzenz Lange, Eric W. Deutsch, Ruedi Aebersold posted to quantitative-proteomics mass-spectrometry by sjcockell on 2009-10-09 10:09:47 as along with 4 people brianb roys jbhiatt absterga
	Small Stress Response Proteins in Escherichia coli: Proteins Missed by Classical Proteomic Studies. [My Copy] Journal of bacteriology (4 September 2009) by Matthew R. Hemm, Brian J. Paul, Juan Miranda-Rios, Aixia Zhang, Nima Soltanzad, Gisela Storz posted to small-proteins proteomics by sjcockell on 2009-10-09 09:53:15 as
	Absolute abundance for the masses [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 825-826. by Christine Vogel, Edward M. Marcotte posted to quantitative-proteomics mass-spectrometry by sjcockell on 2009-10-09 09:52:52 as along with 2 people brianb oelemento
	eggNOG: automated construction and annotation of orthologous groups of genes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (16 January 2008), gkm796. by Lars Juhl J. Jensen, Philippe Julien, Michael Kuhn, et al.Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork posted to orthology clustering by sjcockell on 2009-10-08 17:12:30 as along with 8 people yas johanviklund guhjy jmeppley maximilianh Thaverkamp hplatero larsjuhljensen
	A Novel Bioinformatics Strategy for Function Prediction of Poorly-Characterized Protein Genes Obtained from Metagenome Analyses. [My Copy] DNA research : an international journal for rapid publication of reports on genes and genomes (3 October 2009) by Takashi Abe, Shigehiko Kanaya, Hiroshi Uehara, Toshimichi Ikemura posted to protein-classification protein-analysis metagenomics by sjcockell on 2009-10-07 11:57:17 as
	Estimating accuracy of RNA-Seq and microarrays with proteomics. [My Copy] BMC genomics, Vol. 10, No. 1. (16 April 2009), 161. by Xing Fu, Ning Fu, Song Guo, et al.Zheng Yan, Ying Xu, Hao Hu, Corinna Menzel, Wei Chen, Yixue Li, Rong Zeng, Philipp Khaitovich posted to proteomics microarrays correlation by sjcockell on 2009-10-02 16:01:20 as along with 7 people and 1 group hzoltan GustavoLacerda guhjy burak dswan stajich shikin Mycology
	The COG database: an updated version includes eukaryotes [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (11 September 2003), 41. by Roman Tatusov, Natalie Fedorova, John Jackson, et al.Aviva Jacobs, Boris Kiryutin, Eugene Koonin, Dmitri Krylov, Raja Mazumder, Sergei Mekhedov, Anastasia Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander Sverdlov, Sona Vasudevan, Yuri Wolf, Jodie Yin, Darren Natale posted to orthology cog bacteria by sjcockell on 2009-10-01 16:23:59 as along with 14 people and 2 groups aceol thegoose2 cgaugain coela guhjy tharris dmp arve indigoviolet j3xucite treangen bluto westoll natstreet C. elegans / WormBase EisenLab
	OrthoMCL: identification of ortholog groups for eukaryotic genomes. [My Copy] Genome research, Vol. 13, No. 9. (September 2003), pp. 2178-2189. by Li Li, Christian J. Stoeckert, David S. Roos posted to protein-families markov-clustering by sjcockell on 2009-10-01 15:09:28 as along with 15 people and 2 groups GustavoLacerda biomcgary thegoose2 nlapalu dullhunk natstreet druvus tharris mdimmic operon indigoviolet AaronDarling bluto maximilianh ninch C. elegans / WormBase EisenLab
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted to next-gen-sequencing high-throughput-sequencing analysis by sjcockell on 2009-09-28 09:50:41 as along with 10 people and 2 groups fstrozzi manduca djkt rdiaz torfinnnome walshtp nuin natstreet druvus ollieredfernwork Journal picks Orengo Group Journal Picks
	iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly” [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Saw Y. Ow, Malinda Salim, Josselin Noirel, Caroline Evans, Ishtiaq Rehman, Phillip C. Wright posted to proteomics itraq by sjcockell on 2009-09-21 13:29:48 as along with 1 person brianb
	MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 4. (15 April 2009), pp. 696-705. by Jennifer A. Mead, Luca Bianco, Vanessa Ottone, et al.Chris Barton, Richard G. Kay, Kathryn S. Lilley, Nicholas J. Bond, Conrad Bessant posted to reaction-monitoring proteomics by sjcockell on 2009-09-15 13:40:11 as along with 3 people mdharsee fishtank guhjy
	Isobaric Peptide Termini Labeling for MS/MS-Based Quantitative Proteomics. [My Copy] Journal of proteome research, Vol. 8, No. 9. (September 2009), pp. 4333-4341. by Christian J. Koehler, Margarita Strozynski, Frank Kozielski, Achim Treumann, Bernd Thiede posted to quantitative proteomics iptl by sjcockell on 2009-09-10 16:47:37 as along with 1 person brianb
	The Chemical Structure of a Molecule Resolved by Atomic Force Microscopy [My Copy] Science, Vol. 325, No. 5944. (28 August 2009), pp. 1110-1114. by Leo Gross, Fabian Mohn, Nikolaj Moll, Peter Liljeroth, Gerhard Meyer posted to molecular-visualisation microscopy by sjcockell on 2009-08-28 15:16:48 as along with 6 people and 2 groups Asithar thegoose Herve NickFurnham spreeuw samjlord Qugatopia moernerlab
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to networks pathways visualisation by sjcockell on 2009-08-10 14:32:31 as along with 37 people and 3 groups greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Structural basis for the [beta] lactam resistance of PBP2a from methicillin-resistant Staphylococcus aureus [My Copy] Nat Struct Mol Biol, Vol. 9, No. 11. (November 2002), pp. 870-876. by Daniel Lim, Natalie C. J. Strynadka posted to aptamems mrsa protein-structure by sjcockell on 2009-08-10 10:17:18 as along with 1 person ivke
	The penicillin-binding proteins: structure and role in peptidoglycan biosynthesis [My Copy] FEMS Microbiology Reviews, Vol. 32, No. 2. (2008), pp. 234-258. by Eric Sauvage, Frédéric Kerff, Mohammed Terrak, Juan A. Ayala, Paulette Charlier posted to aptamems mrsa pbp2 by sjcockell on 2009-08-10 10:13:58 as along with 1 person ivke
	A guide to the PRIDE proteomics data repository. [My Copy] Proteomics (6 August 2009) by Juan Antonio A. Vizcaíno, Richard Côté, Florian Reisinger, et al.Joe Foster, Michael Mueller, Jonathan Rameseder, Henning Hermjakob, Lennart Martens posted to data-standards pride proteomics by sjcockell on 2009-08-10 09:40:06 as along with 1 person brianb
	Who will take up the gauntlet? Challenges and opportunities for systems biology and drug discovery. [My Copy] EMBO reports, Vol. 10 Suppl 1 (August 2009) by Adriano M. Henney posted to drug-discovery systems-biology by sjcockell on 2009-08-07 09:56:10 as
	A new revolution? The place of systems biology and synthetic biology in the history of biology. [My Copy] EMBO reports, Vol. 10 Suppl 1 (August 2009) by Michel Morange posted to review synthetic-biology systems-biology by sjcockell on 2009-08-07 09:55:53 as along with 3 people jjray dbikard allysonlister
	PubMed-EX: a web browser extension to enhance PubMed search with text mining features. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 22. (15 November 2009), pp. 3031-3032. by Richard Tzong-Han T. Tsai, Hong-Jie J. Dai, Po-Ting T. Lai, Chi-Hsin H. Huang posted to extension pubmed by sjcockell on 2009-08-07 09:55:32 as along with 18 people and 2 groups daforerog jsatkosk reyez inesdesantiago dullhunk artaban421 lh49 biblio24 Zephyrus henk-cul sebastien_vigneau thegoose thegoose3 Gaetan operon guhjy lmichan druvus BergmanLab dbmi-nlp
	Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2617-2618. by Mathieu Clement-Ziza, Christophe Malabat, Christian Weber, et al.Ivan Moszer, Tero Aittokallio, Catherine Letondal, Sandrine Rousseau posted to cytoscape plugin software by sjcockell on 2009-08-07 09:55:08 as along with 4 people dswan neils frohike druvus
	Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry [My Copy] Mol Cell Proteomics, Vol. 8, No. 11. (1 November 2009), pp. 2405-2417. by Lukas Reiter, Manfred Claassen, Sabine P. Schrimpf, et al.Marko Jovanovic, Alexander Schmidt, Joachim M. Buhmann, Michael O. Hengartner, Ruedi Aebersold posted to false-discovery-rate proteomics tandam-ms by sjcockell on 2009-08-06 09:17:17 as along with 1 person brianb
	A realistic assessment of methods for extracting gene/protein interactions from free text. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (28 July 2009), 233. by Renata Kabiljo, Andrew B. Clegg, Adrian J. Shepherd posted to protein-protein-interactions text-mining by sjcockell on 2009-08-03 10:05:08 as along with 11 people and 4 groups henk-cul martingerner DTD102 satre farzanehs grahamc mitko sillitoe andrewclegg cisevol barriot dbmi-nlp Journal picks Orengo Group Journal Picks BergmanLab
	Mining biological pathways using WikiPathways web services. [My Copy] PloS one, Vol. 4, No. 7. (30 July 2009), e6447. by Thomas Kelder, Alexander R. Pico, Kristina Hanspers, Martijn P. van Iersel, Chris Evelo, Bruce R. Conklin posted to data-mining pathways wiki by sjcockell on 2009-07-31 13:46:52 as along with 14 people and 1 group irenas ptrobajo neilswainston fgibson dullhunk leemond31 najwvandijk renatomilani guhjy druvus frohike AlexanderPico thomaskelder daforerog ConklinLab
	The phosphoproteomics data explosion. [My Copy] Current opinion in chemical biology, Vol. 13, No. 4. (18 October 2009), pp. 414-420. by Simone Lemeer, Albert J. Heck posted to phosphoproteomics by sjcockell on 2009-07-31 13:45:29 as along with 1 person guhjy

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proteomics	106
mass-spectrometry	44
protein-protein-interactions	38
prediction	23
analysis	17
data-standards	17
networks	16
software	15
systems-biology	15
protein-analysis	14
protein-structure	13
ppi	12
protein-annotation	10
quantitative	10
drug-paper	9
review	9
2d-gels	8
visualisation	8
cytoscape	7
data	7
lc-ms	7
liquid-chromatography	7
standards	7
itraq	6
machine-learning	6
pathways	6
psi	6
aptamems	5
gene-ontology	5
interface-prediction	5
mass	5
modelling	5
peptide-mass-fingerprint	5
plugin	5
protein	5
synthetic-biology	5
transcriptomics	5
bioinformatics-resources	4
biology	4
database	4
data-integration	4
drug-design	4
genomics	4
go	4
kegg	4
metagenomics	4
miape	4
molecular-movement	4
ondex	4
spectrometry	4
structure	4
systems	4
tools	4
annotation	3
bioconductor	3
biomarkers	3
clustering	3
data-management	3
dige	3
drug-repurposing	3
fluoresence	3
fuge	3
image-analysis	3
interactome	3
interface	3
lims	3
mascot	3
methods	3
nar	3
network-analysis	3
pipeline	3
pride	3
quantitative-proteomics	3
r	3
sortase	3
sortase-substrates	3
statistics	3
2d	2
algorithm	2
api	2
application	2
bacteria	2
bayesian	2
bioinformatics	2
biomart	2
coevolution	2
correlation	2
databases	2
design	2
diffusion	2
docking	2
drug-discovery	2
evolution	2
experimental-design	2
fdr	2
game-theory	2
gels	2
genome	2
interactions	2
meta-analysis	2
microarray	2
mrsa	2
ms-ms	2
omics	2
ontology	2
opinion	2
orthology	2
peptide	2
pfam	2
phosphoproteomics	2
programming	2
protein-classification	2
protein-microarray	2
protein-protein	2
rice	2
ruby	2
sbml	2
semantic-web	2
shotgun	2
tandam-ms	2
techniques	2
uniprot	2
user-friendly	2
web-services	2
workflow	2
yeast	2
yeast-two-hybrid	2
ab-initio	1
acknowledged	1
aggregation	1
aging	1
alzheimers	1
amazon-aws	1
applications	1
atomic_force_microscopy	1
author	1
automatic-annotation	1
automation	1
bacillus-subtilis	1
bingo	1
biologist-tools	1
bioluminescence	1
biopython	1
biosysbio	1
blast	1
book-chapter	1
casp	1
cell-biology	1
cellml	1
cells	1
circadian-rhythms	1
clinical	1
cloud-computing	1
clustal	1
cluster-computing	1
cockell	1
code	1
co-evolution	1
cog	1
collaboration	1
community	1
comparative-genomics	1
comparison	1
conference-report	1
confidence-scores	1
cool-science	1
crystallisation	1
curation	1
curvation-effect	1
darwin	1
data-analysis	1
data-distribution	1
data-mining	1
data-reliability	1
data-sharing	1
data-visualization	1
decision-trees	1
decomp	1
delta2d	1
de-novo	1
domain	1
drugbank	1
dynamic-programming	1
editorial	1
embed	1
enzyme-activity	1
e-therapeutics	1
extension	1
false-discovery-rate	1
family-clustering	1
feature-extraction	1
fingerprint	1
free	1
friendfeed	1
functional-proteomics	1
gelml	1
gene-lists	1
go-similarity	1
gostats	1
graph	1
graph-theory	1
grid-computing	1
guide	1
hardware	1
high-throughput-sequencing	1
hpc	1
hprd	1
image	1
inference	1
infrastructure	1
integration	1
introduction	1
iptl	1
ismb	1
isotopic-labeling	1
java	1
kaas	1
knockouts	1
knots	1
ko	1
label	1
laser-ablation-electrospray-ionization	1
learning	1
length-maintenance	1
library	1
linux	1
literature-mining	1
machine	1
machine-readable	1
magnetic-bacteria	1
maldi	1
markov-clustering	1
metabolomics	1
meta-methods	1
methicillin-resistance	1
microarrays	1
microblog	1
microscopy	1
molecular-visualisation	1
mowse	1
multiple-alignments	1
mzml	1
mzxml	1
next-gen-sequencing	1
obo	1
ode	1
oxl	1
parkinsons	1
pbp2	1
peak-detection	1
peptide-sequencing	1
pfu	1
plugi	1
post-translational-modifications	1
profiling	1
protein-arrays	1
protein-dynamics	1
protein-families	1
protein-surfaces	1
proteolysis	1
pubmed	1
quality	1
reaction-kinetics	1
reaction-monitoring	1
redundancy	1
rna-thermometer	1
samespots	1
scoring	1
search	1
seldi	1
sequence-analysis	1
sequest	1
signal-transduction	1
similarity	1
simulations	1
small-proteins	1
stem	1
storage	1
stress	1
subcellular-localisation	1
support	1
symatlas	1
technology	1
telomere	1
text-mining	1
tutorial	1
twitter	1
ui	1
unified-protein-resource	1
update	1
usability	1
viper	1
visual-proteomics	1
warehousing	1
web	1
web-resource	1
web-tech	1
wiki	1

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