sjung's library 56 articles Export

	Tissue specificity and the human protein interaction network. [My Copy] Molecular systems biology, Vol. 5 (7 April 2009) by Alice Bossi, Ben Lehner posted to no-tag by sjung on 2009-04-08 23:37:26 as along with 13 people jfr dolchan balicea poirel tmmurali diamantis phoenixzxl coela frohike Kubke renatomilani TRHvidsten grahamc
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to no-tag by sjung on 2009-03-05 17:04:56 as along with 7 people nicholasflann antonkratz greg guhjy bertelsen mjoach allysonlister
	A pitfall of wiki solution for biological databases [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 295-296. by Masanori Arita posted to wikipath by sjung on 2008-12-07 17:21:01 as along with 5 people guhjy dullhunk nuin renatomilani druvus
	An effective algorithm for mining 3-clusters in vertically partitioned data [My Copy] In CIKM '08: Proceeding of the 17th ACM conference on Information and knowledge mining (2008), pp. 1103-1112. by Faris Alqadah, Raj Bhatnagar posted to biclustering by sjung on 2008-12-01 23:29:07 as
	Annotation of Mammalian Primary microRNAs [My Copy] BMC Genomics, Vol. 9 (27 November 2008), 564. by Harpreet, Sam Griffiths-Jones posted to no-tag by sjung on 2008-11-28 03:58:10 as along with 8 people and 1 group jsatkosk jfr heliopais daforerog druvus pengchy ealloza balicea microRNA
	Finding multiple target optimal intervention in disease-related molecular network [My Copy] Mol Syst Biol, Vol. 4 (4 November 2008) by Kun Yang, Hongjun Bai, Qi Ouyang, Luhua Lai, Chao Tang posted to control genetic-network by sjung on 2008-11-25 15:56:24 as along with 4 people agomez sg45653 jbesnard phoenixzxl
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to gene-regulatory-network by sjung on 2008-11-04 03:35:33 as along with 8 people sotacam kemalpak msuarezdiez jfr pengchy lptolik druvus isimpson
	Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 405-410. by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, et al.Ke Zhang, Tamas Fischer, Sean R. Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I. Grewal, Jonathan S. Weissman, Nevan J. Krogan posted to context-specific genetic-network sysbio by sjung on 2008-10-17 17:57:44 as along with 15 people dakelley biomcgary ajbattle nzm Keksle jbhiatt lflorez roys tmmurali zwang marck caseybrown emptyhb bpcusack brembs
	GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach [My Copy] BMC Bioinformatics, Vol. 9 (24 September 2008), 395. by Li Shen, Jie Liu, Wei Wang posted to no-tag by sjung on 2008-09-25 17:53:25 as along with 2 people sbottani ajgentles
	The Origins of Order: Self-Organization and Selection in Evolution [My Copy] (10 June 1993) by Stuart A. Kauffman posted to no-tag by sjung on 2008-09-23 00:34:38 as along with 18 people and 3 groups kinop adamnellis knuu dlobo Adso eldan bayesian balicea pchiusano voiklis daveh echinotrix spirit_of_numenor kray avo mjoach MarkVanHeeswijk santi515 GEB ComplexAdaptiveSystems ColDyn
	From molecular to modular cell biology [My Copy] Nature by Leland H. Hartwell, John J. Hopfield, Stanislas Leibler, Andrew W. Murray posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:35 as
	Revealing modular organization in the yeast transcriptional network [My Copy] Nat Genet, Vol. 31, No. 4. (2002), pp. 370-377. by Jan Ihmels, Gilgi Friedlander, Sven Bergmann, Ofer Sarig, Yaniv Ziv, Naama Barkai posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:35 as
	Genetic network inference: from co-expression clustering to reverse engineering [My Copy] Bioinformatics, Vol. 16, No. 8. (2000), pp. 707-726. by Patrik D'Haeseleer, Shoudan Liang, Roland Somogyi posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:35 as
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [My Copy] Nat Genet, Vol. 34, No. 2. (2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	Defining transcription modules using large-scale gene expression data [My Copy] Bioinformatics, Vol. 20, No. 13. (2004), pp. 1993-2003. by Jan Ihmels, Sven Bergmann, Naama Barkai posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	Modularized learning of genetic interaction networks from biological annotations and mRNA expression data [My Copy] Bioinformatics, Vol. 21, No. 11. (2005), pp. 2739-2747. by Phil H. Lee, Doheon Lee posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	Collective dynamics of /`small-world/' networks [My Copy] Nature, Vol. 393, No. 6684. (1998), pp. 440-442. by Duncan J. Watts, Steven H. Strogatz posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	The small world inside large metabolic networks [My Copy] Proceedings of the Royal Society B, Vol. 268, No. 1478. (2001), pp. 1803-1810. by A. Wagner, D. A. Fell posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	Learning Module Networks [My Copy] Journal of Machine Learning Research, Vol. 6 (2005), pp. 557-588. by Eran Segal, Dana Pe'er, Aviv Regev, Daphne Koller, Nir Friedman posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	A module map showing conditional activity of expression modules in cancer. [My Copy] Nature Genetics, Vol. 36, No. 10. (2004), pp. 1090-1098. by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev posted to -- cancer classification dna genetic genomics invasiveness leukemia metastasis microarrays module network sysbioasu tumors by sjung on 2008-09-13 07:18:34 as
	From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions [My Copy] Mol Syst Biol, Vol. 4 (2008) by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir posted to genetic module network sysbioasu by sjung on 2008-09-13 07:18:34 as
	Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function [My Copy] Genome Res., Vol. 11, No. 9. (2001), pp. 1463-1468. by Dov Greenbaum, Nicholas M. Luscombe, Ronald Jansen, Jiang Qian, Mark Gerstein posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:59 as
	Functional genomics and proteomics: charting a multidimensional map of the yeast cell [My Copy] Trends in Cell Biology, Vol. 13, No. 7. (2003), pp. 344-356. by Gary D. Bader, Adrian Heilbut, Brenda Andrews, Mike Tyers, Timothy Hughes, Charles Boone posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:59 as
	Combining Location and Expression Data for Principled Discovery of Genetic Regulatory Network Models [My Copy] Pac Symp Biocomput (2002), pp. 437-449. by Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:59 as
	Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data [My Copy] Bioinformatics, Vol. 24, No. 17. (2008), pp. 1874-1880. by Huai Li, Ming Zhan posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	COMBINING MICROARRAYS AND BIOLOGICAL KNOWLEDGE FOR ESTIMATING GENE NETWORKS VIA BAYESIAN NETWORKS. [My Copy] Journal of Bioinformatics & Computational Biology, Vol. 2, No. 1. (2004), pp. 77-98. by Seiya Imoto, Tomoyuki Higuchi, G. O. T. O. Takao, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano posted to -- bayesian bioinformatics biological biology biomathematics biometry computational data expression gene integration knowledge microarray multi-type network processing sysbioasu by sjung on 2008-09-13 07:15:58 as
	Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection [My Copy] Bioinformatics, Vol. 19, No. suppl{_}2. (2003), pp. ii227-236. by Yoshinori Tamada, Sunyong Kim, Hideo Bannai, et al.Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Informative Structure Priors: Joint Learning of Dynamic Regulatory Networks from Multiple Types of Data [My Copy] Pac Symp Biocomput (2005), pp. 459-470. by Allister Bernard, Alexander J. Hartemink posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004) by Feng Gao, Barrett Foat, Harmen Bussemaker posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Discovering Regulatory Modules from Heterogeneous Information Sources [My Copy] Pac Symp Biocomput (2005) by Tijl De Bie, Pieter Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal posted to genetic module network integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as along with 1 person tvdbulck
	Learning module networks from genome-wide location and expression data [My Copy] FEBS Letters, Vol. 578, No. 3. (2004), pp. 297-304. by Xiaojiang Xu, Lianshui Wang, Dafu Ding posted to genetic integration location module multi-type network probability program regulatory sysbioasu by sjung on 2008-09-13 07:15:58 as
	Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genomewide Data$\\backslash$ [My Copy] Proceedings of the National Academy of Sciences of the United States of America$\\backslash$, Vol. 101{$\\backslash$}, No. 9{$\\backslash$}. (Mar. 2, 2004{$\\backslash$}) by Amos$\backslash$ Tanay, Roded$\backslash$ Sharan, Martin$\backslash$ Kupiec, Ron Shamir$\backslash$, Richard posted to genetic module network integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium [My Copy] Molecular Systems Biology, Vol. 1, No. msb4100005. (2005), pp. E1-E10. by Amos Tanay, Israel Steinfeld, Martin Kupiec, Ron Shamir posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Studying the interactome with the yeast two-hybrid system and mass spectrometry [My Copy] Mass Spectrometry Reviews, Vol. 23, No. 5. (2004), pp. 350-367. by Barry Causier posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Incorporating Gene Functions into Regression Analysis of DNA-Protein Binding Data and Gene Expression Data to Construct Transcriptional Networks [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 3. (2008), pp. 401-415. by Peng Wei, Wei Pan posted to analysis estimator factor integration lasso microarray multi-type shrinkage stratified sysbioasu transcription by sjung on 2008-09-13 07:15:58 as
	Identifying biologically relevant genes via multiple heterogeneous data sources [My Copy] In KDD '08: Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining (2008), pp. 839-847. by Zheng Zhao, Jiangxin Wang, Huan Liu, Jieping Ye, Yung Chang posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (2003), pp. 1337-1342. by Ziv B. Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, Benjamin D. Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to genetic module network integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	Spectral Clustering and Transductive Learning with Multiple Views [My Copy] Intl. Conf. on Mach. Learn. (2007) by Dengyong Zhou, Christopher J. C. Burges posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:58 as
	From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions [My Copy] Mol Syst Biol, Vol. 4 (2008) by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir posted to integration multi-type sysbioasu by sjung on 2008-09-13 07:15:57 as
	Genomic analysis of regulatory network dynamics reveals large topological changes [My Copy] Nature, Vol. 431, No. 7006. (2004), pp. 308-312. by Nicholas M. Luscombe, Madan M. Babu, Haiyuan Yu, Michael Snyder, Sarah A. Teichmann, Mark Gerstein posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Topology of Evolving Networks: Local Events and Universality [My Copy] Physical Review Letters, Vol. 85, No. 24. (2000) by Rèka Albert, Albert L. Barab·si posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering [My Copy] Genome Biology, Vol. 3, No. 11. (2002) by Audrey P. Gasch, Michael B. Eisen posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle [My Copy] Cell, Vol. 106, No. 6. (2001), pp. 697-708. by Itamar Simon, John Barnett, Nancy Hannett, et al.Christopher T. Harbison, Nicola J. Rinaldi, Thomas L. Volkert, John J. Wyrick, Julia Zeitlinger, David K. Gifford, Tommi S. Jaakkola, Richard A. Young posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes [My Copy] Molecular Biology of the Cell, Vol. 11, No. 12. (2000), pp. 4241-4257. by Audrey P. Gasch, Paul T. Spellman, Camilla M. Kao, et al.Orna C. Harel, Michael B. Eisen, Gisela Storz, David Botstein, Patrick O. Brown posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Recovering temporally rewiring networks: a model-based approach [My Copy] In ICML '07: Proceedings of the 24th international conference on Machine learning (2007), pp. 321-328. by Fan Guo, Steve Hanneke, Wenjie Fu, Eric P. Xing posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Genetic oscillation deduced from Hopf bifurcation in a genetic regulatory network with delays [My Copy] Mathematical Biosciences, Vol. 215, No. 1. (2008), pp. 55-63. by Min Xiao, Jinde Cao posted to bifurcation context-specific delay genetic hopf network oscillation regulatory stability sysbioasu time by sjung on 2008-09-13 07:11:38 as
	Cell cycle-dependent gene networks relevant to cancer [My Copy] Progress in Natural Science, Vol. 18, No. 8. (2008), pp. 945-952. by Yun Xiao, Xia Li, Yueying Yang, Yadong Wang, Shaoqi Rao posted to cell context-specific cycle gene genetic hela microarray network sysbioasu by sjung on 2008-09-13 07:11:38 as
	Discovering Condition-Dependent Bayesian Networks for Gene Regulation [My Copy] Genomic Signal Processing and Statistics, 2007. GENSIPS 2007. IEEE International Workshop on In Genomic Signal Processing and Statistics, 2007. GENSIPS 2007. IEEE International Workshop on (2007), pp. 1-4. by A. Ajanki, J. Nikkila, S. Kaski posted to bayes bayesian biological biology computing condition-dependent context-specific engineering gene genetic genetics methods network networks regulation studies sysbioasu by sjung on 2008-09-13 07:11:38 as
	A module map showing conditional activity of expression modules in cancer. [My Copy] Nature Genetics, Vol. 36, No. 10. (2004), pp. 1090-1098. by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev posted to -- cancer classification context-specific dna genetic genomics invasiveness leukemia metastasis microarrays network sysbioasu tumors by sjung on 2008-09-13 07:11:38 as
	Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler [My Copy] Bioinformatics, Vol. 24, No. 18. (2008), pp. 2071-2078. by Marco Grzegorczyk, Dirk Husmeier, Kieron D. Edwards, Peter Ghazal, Andrew J. Millar posted to context-specific genetic network sysbioasu by sjung on 2008-09-13 07:11:38 as

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