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Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities

by: Justin Kuczynski, Jesse Stombaugh, William A. Walters, Antonio González, J. Gregory Caporaso, Rob Knight
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] In Current Protocols in Bioinformatics, Vol. Chapter 10 (December 2002), doi:10.1002/0471250953.bi1007s36  Key: citeulike:10616497

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Abstract

QIIME (canonically pronounced “chime”) is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities. Curr. Protoc. Bioinform. 36:10.7.1-10.7.20. © 2011 by John Wiley & Sons, Inc.


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