Phylocom: software for the analysis of phylogenetic community structure and trait evolution Export

@article{citeulike:3197549, abstract = {Motivation: The increasing availability of phylogenetic and trait data for communities of co-occurring species has created a need for software that integrates ecological and evolutionary analyses. Capabilities: Phylocom calculates numerous metrics of phylogenetic community structure and trait similarity within communities. Hypothesis testing is implemented using several null models. Within the same framework, it measures phylogenetic signal and correlated evolution for species traits. A range of utility functions allow community and phylogenetic data manipulation, tree and trait generation, and integration into scientific workflows. Availability: Open source at: http://phylodiversity.net/phylocom/ Contact: cwebb@oeb.harvard.edu 10.1093/bioinformatics/btn358}, author = {Webb, Campbell O. and Ackerly, David D. and Kembel, Steven W.}, citeulike-article-id = {3197549}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btn358}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/18/2098}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/18678590}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=18678590}, day = {15}, doi = {10.1093/bioinformatics/btn358}, journal = {Bioinformatics}, keywords = {software}, month = {September}, number = {18}, pages = {2098--2100}, posted-at = {2008-09-17 17:58:25}, priority = {2}, title = {Phylocom: software for the analysis of phylogenetic community structure and trait evolution}, url = {http://dx.doi.org/10.1093/bioinformatics/btn358}, volume = {24}, year = {2008} }

TY - JOUR ID - citeulike:3197549 L3 - citeulike-article-id:3197549 N2 - Motivation: The increasing availability of phylogenetic and trait data for communities of co-occurring species has created a need for software that integrates ecological and evolutionary analyses. Capabilities: Phylocom calculates numerous metrics of phylogenetic community structure and trait similarity within communities. Hypothesis testing is implemented using several null models. Within the same framework, it measures phylogenetic signal and correlated evolution for species traits. A range of utility functions allow community and phylogenetic data manipulation, tree and trait generation, and integration into scientific workflows. Availability: Open source at: http://phylodiversity.net/phylocom/ Contact: cwebb@oeb.harvard.edu 10.1093/bioinformatics/btn358 IS - 18 JF - Bioinformatics EP - 2100 TI - Phylocom: software for the analysis of phylogenetic community structure and trait evolution VL - 24 SP - 2098 KW - software AU - Webb, Campbell AU - Ackerly, David AU - Kembel, Steven PY - 2008/09/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btn358 ER -