skembel's Hugenholtz:P [10 articles] Export

Recent papers posted to skembel's library by the author Hugenholtz:P. You can also see everyone's Hugenholtz:P.

	ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2737-2738. by Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi posted to software r metagenomics by skembel on 2009-10-09 23:43:36 as along with 4 people and 1 group operon jmeppley dswan djkt iSEEM
	Comparative Metagenomics of Microbial Communities [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to metagenomics by skembel on 2009-09-18 23:15:35 as along with 18 people and 5 groups hwright Thaverkamp Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten jlgreen djkt Microbial-Ecology anammox microbiology_nijmegen Green Lab iSEEM
	Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to pyrosequencing methods diversity by skembel on 2009-09-03 20:05:56 as along with 3 people and 1 group n00c jgill jmeppley iSEEM
	Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa. [My Copy] Journal of clinical microbiology, Vol. 45, No. 6. (June 2007), pp. 1954-1962. by J. L. Flanagan, E. L. Brodie, L. Weng, et al.S. V. Lynch, O. Garcia, R. Brown, P. Hugenholtz, T. Z. DeSantis, G. L. Andersen, J. P. Wiener-Kronish, J. Bristow posted to phylochip pseudomonas by skembel on 2009-06-08 03:17:45 as along with 2 people mcox elbrodie
	Accurate phylogenetic classification of variable-length DNA fragments [My Copy] Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72. by Alice C. Mchardy, Héctor G. Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos posted to metagenomics methods by skembel on 2009-04-28 23:21:58 as along with 10 people and 4 groups dakelley esyoun Thaverkamp idoerg jmeppley bluto azazello wenhan jlgreen djkt Bioinformatics MBLAB Green Lab iSEEM
	Annotation of metagenome short reads using proxygenes [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i7-13. by Daniel Dalevi, Natalia N. Ivanova, Konstantinos Mavromatis, et al.Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos C. Kyrpides, Victor M. Markowitz posted to metagenomics methods by skembel on 2009-04-13 22:05:24 as along with 4 people and 1 group Thaverkamp druvus hpaces neils iSEEM
	A Bioinformatician's Guide to Metagenomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to bioinformatics metagenomics by skembel on 2009-04-10 23:37:54 as along with 40 people and 8 groups ajsferreira CorinYeats sconlan jasontsai halinat hwright michaelbarton taylor73 esyoun bluto idoerg hpaces inquil EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku Orengo Group Journal Picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	Lineages of acidophilic archaea revealed by community genomic analysis. [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1933-1935. by B. J. Baker, G. W. Tyson, R. I. Webb, et al.J. Flanagan, P. Hugenholtz, E. E. Allen, J. F. Banfield posted to archaea diversity metagenomics by skembel on 2009-01-27 17:49:38 as along with 3 people sharpton tkandell theseuskf
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods [My Copy] Nature Methods, Vol. 4, No. 6. (29 April 2007), pp. 495-500. by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, et al.Harris Shapiro, Eugene Goltsman, Alice C. McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C. Kyrpides posted to metagenomics methods by skembel on 2008-12-11 18:57:56 as along with 19 people and 6 groups klo CorinYeats dutilh dakelley taylor73 sriesenfeld Thaverkamp druvus Yanno oamg jmeppley bluto azazello GustavoLacerda carlk alexl mjetten jlgreen djkt 8_01 Glimcher_Lab Bioinformatics microbiology_nijmegen Green Lab iSEEM
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted to microbial phylodiversity phylogenetics by skembel on 2008-11-07 19:20:01 as along with 19 people and 7 groups michaelbarton hwright pkm idoerg sriesenfeld kozo-ni ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes mjetten jlgreen djkt structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab iSEEM

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diversity	47
phylogenetics	45
metagenomics	40
microbial	33
methods	28
phylodiversity	20
communityecology	15
genomics	14
microbiome	13
pyrosequencing	12
comparativemethods	10
microbes	9
neutral	7
454	7
ocean	6
alignment	6
roots	6
16s	6
entropy	6
software	6
betadiversity	6
selection	6
diversification	6
phylotyping	5
phylogenomics	5
phylogeny	5
functionaldiversity	5
bacteria	4
gos	4
supermatrix	4
supertrees	4
traits	4
biogeography	4
viral	4
ecology	4
r	3
niche	3
foraging	3
roc	3
fungi	3
leaves	3
bayesian	3
adaptation	3
community	2
coalescent	2
incongruence	2
cf	2
profiling	2
species_trees	2
evolution	2
nextgensequencing	2
genetics	2
species	2
ants	2
gene_trees	2
ml	2
mutualisms	2
otu	2
abundance	2
gut	2
symbioses	2
air	2
competition	2
archaea	2
congruence	2
endophytes	2
genomes	2
simulation	2
controversial	1
gene_prediction	1
tag	1
sanger	1
hpc	1
cogs	1
treeoflife	1
binning	1
phylochip	1
bioinformatics	1
ffp	1
teaching	1
kmer	1
megatree	1
shannon	1
shewanella	1
diatoms	1
bacterial	1
bci	1
sampling	1
popgen	1
phyllosphere	1
rarity	1
profiles	1
functional_characterization	1
bats	1
clustering	1
mp	1
communities	1
depth	1
proteomics	1
annotation	1
schizophrenia	1
metatranscriptomics	1
funding	1
climatechange	1
ph	1
wow	1
partitioning	1
metabolic	1
ltt	1
phylogenies	1
sequencing	1
rna	1
copy_number	1
mcmc	1
coevolution	1
barcode	1
transcriptome	1
metacommunity	1
greedyalgorithm	1
orthologs	1
outofafrica	1
ess	1
cystic_fibrosis	1
tree_comparison	1
blast	1
grants	1
tree_of_life	1
pseudomonas	1
operon	1
community_structure	1
spatial	1
bootstrap	1
comparative_methods	1
missingdata	1
angiosperms	1
marine	1
taxonomy	1
dispersal	1
community_ecology	1
drift	1
speciation	1
systems_biology	1
nserc	1
phenology	1
plants	1
shotgun_sequencing	1
otus	1
underground	1
data	1
pd	1
root	1
concordance	1
belowground	1

skembel's Hugenholtz:P [10 articles] Export

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